FC878075

Overview
NameFC878075
Unique NameFC878075
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length849
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_STAAM (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=gatA PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 9.416e-21
Identity = 69/233 (29.61%), Postives = 112/233 (48.07%), Query Frame = 2
Query:   83 ITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSF 781
            I P  V +    A+ E+ +P +K   F+  ++E+ +K+A E      K +    L G+ + +KD I  +   TT  +K L    P   ++  + +L    A+L+GK NM E   G S    ++    NP+D   +               L P++LG D GGS+R PAA CGVVG KPT+GR+   G++    ++  +G L   V+D  +V  AI+G   +   +  +  V F
Sbjct:   20 IKPSDVVKDIYDAIEET-DPTIKS--FLALDKENAIKKAQELDELQAKDQMDGKLFGIPMGIKDNIITNGLETTCASKMLEGFVPIY-ESTVMEKLHKENAVLIGKLNMDEFAMGGSTETSYFKKTVNPFDHKAVPGGSSGGSAAAVAAGLVPLSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAIVLEAISGADVNDSTSAPVDDVDF 248          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_STAA1 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=gatA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 9.416e-21
Identity = 69/233 (29.61%), Postives = 112/233 (48.07%), Query Frame = 2
Query:   83 ITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSF 781
            I P  V +    A+ E+ +P +K   F+  ++E+ +K+A E      K +    L G+ + +KD I  +   TT  +K L    P   ++  + +L    A+L+GK NM E   G S    ++    NP+D   +               L P++LG D GGS+R PAA CGVVG KPT+GR+   G++    ++  +G L   V+D  +V  AI+G   +   +  +  V F
Sbjct:   20 IKPSDVVKDIYDAIEET-DPTIKS--FLALDKENAIKKAQELDELQAKDQMDGKLFGIPMGIKDNIITNGLETTCASKMLEGFVPIY-ESTVMEKLHKENAVLIGKLNMDEFAMGGSTETSYFKKTVNPFDHKAVPGGSSGGSAAAVAAGLVPLSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAIVLEAISGADVNDSTSAPVDDVDF 248          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_RUBXD (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=gatA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 9.416e-21
Identity = 69/208 (33.17%), Postives = 101/208 (48.56%), Query Frame = 2
Query:  152 MSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING--PLPSQQPTVSLP 769
            ++ FI    E  L++A     R ++GE +   + V IAVKD +      TT G++ L    P   +A  ++       I+VGK NM E   G+S  N  YG  RNP+D S++                   ALG D GGSVR PA+ CG+VG KPT+GR+   G++    ++  +G +   V DA ++  AI G  P  S    V +P
Sbjct:   38 LNSFITGTPELALERAARVDERLRRGEEVRPWECVPIAVKDVLSTRGVRTTCGSRILENFEPVY-EASALLSFGP-DPIMVGKANMDEFAMGSSTENSAYGPTRNPWDLSRVPGGSSGGSAAAVAAGQGWWALGTDTGGSVRQPASFCGLVGLKPTYGRVSRYGLIAFASSLDQIGPMTRDVRDAALLLQAIAGHDPKDSTSAGVEVP 243          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_MYCGI (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Mycobacterium gilvum (strain PYR-GCK) GN=gatA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 9.416e-21
Identity = 72/234 (30.77%), Postives = 106/234 (45.30%), Query Frame = 2
Query:   71 SSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPI-SVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLP 769
            SS +++   V + F+  +  +         F++   E  L  A         GE + S L GV +A+KD    +  PTT G+K L        DA    +LR  G  ++GKTNM E   G+S  N  YG  RNP+D  ++                 P+A+G D GGS+R PAAL   VG KPT+G +   G++    ++   G  A TV D  +++  I G  P    +V  P
Sbjct:   17 SSKEVSSAEVTQAFLDQIAATDGD---YHAFLHVGAEQALAAAQTVDRAVAAGEHLPSPLAGVPLALKDVFTTTDMPTTCGSKVLEGWTS-PYDATVTAKLRSAGIPILGKTNMDEFAMGSSTENSAYGPTRNPWDTERVPGGSGGGSAAALAAFQAPLAIGTDTGGSIRQPAALTATVGVKPTYGTVSRYGLVACASSLDQGGPCARTVLDTALLHQVIAGHDPLDSTSVEAP 246          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_METBF (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=gatA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 9.416e-21
Identity = 67/185 (36.22%), Postives = 91/185 (49.19%), Query Frame = 2
Query:  179 EDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            E  L+QA +  +    G     L GV IA+KD I     P + G+K L    P   +A  + +L   GA+++GKTNM E   G+S    ++G   NP+D  ++                 P ALG D GGSVR PAA CGVVG KPT+G +   GV+    ++  VG LA  V D  V+   I G
Sbjct:   43 EKALEQAKKIDVEGHNGP----LAGVPIAIKDNISVVGLPNSCGSKILEDYIP-PFNAYVIEKLLAAGAVILGKTNMDEFAMGSSTETSYFGPTANPWDLERVPGGSSGGSAAVVAAGEAPFALGSDTGGSVRCPAAFCGVVGLKPTYGAVSRYGVVAYANSLEQVGPLANNVTDIAVLMDVIAG 222          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_METAC (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methanosarcina acetivorans GN=gatA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 9.416e-21
Identity = 62/163 (38.04%), Postives = 84/163 (51.53%), Query Frame = 2
Query:  245 LDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            L GV IA+KD I     P + G+K L    P   +A  + +L   GA+++GKTN+ E   G+S    +YG   NP+D  ++                 P ALG D GGSVR PAA CGVVG KPT+G +   GV+    ++  VG LA  VED  ++   I G
Sbjct:   62 LAGVPIAIKDNISVVGLPNSCGSKILEGYVP-PFNAHVIEKLLDAGAVILGKTNLDEFAMGSSTETSYYGPTANPWDLERVPGGSSGGSAAVVAAGEAPFALGSDTGGSVRCPAAFCGVVGLKPTYGAVSRYGVVAYANSLEQVGPLANNVEDIAILMDVIAG 223          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_LACS1 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Lactobacillus salivarius subsp. salivarius (strain UCC118) GN=gatA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 9.416e-21
Identity = 64/191 (33.51%), Postives = 97/191 (50.79%), Query Frame = 2
Query:  161 FINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            F+  +EE  L++A +   R  K +  S+LDG+ I +KD I      TT  +K L    P   +A  + +L   G I VGK NM E   G+S  N  + + +N +D +K+                   +LG D GGS+R PAA  G+VG KPT+GR+   G++    ++  +G L  TV+D  +V  AI+G
Sbjct:   43 FLKLDEERALEKARKIDERGVKAD--SILDGIGIGIKDNIVTKDLTTTAASKMLENFEPIY-NATVMDKLNDAGMITVGKLNMDEFAMGSSTENSAFKITKNVWDTTKVPGGSSGGSAAAVASGQVLASLGSDTGGSIRQPAAFNGIVGVKPTYGRVSRYGLIAFASSLDQIGPLTRTVKDNALVLNAISG 230          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_HERAR (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Herminiimonas arsenicoxydans GN=gatA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 9.416e-21
Identity = 69/224 (30.80%), Postives = 105/224 (46.88%), Query Frame = 2
Query:   35 HRWTVLDYSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHK-VRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVED 703
            H  T+ + S    +  I+   +A+ F+  +  S      ++ F++ +E   L+QA  +  R   G    VL G+ IA KD      + +T G+K L   V P   DA  V      G + +GK N  E   G+S  N ++G  +NP+D + I               L P +   D GGS+R PAALCGV G KPT+GR+   G++    ++   G +A T ED
Sbjct:    2 HTKTIKELSALLQTKKISATELAQLFLKRMGASD-----LNAFLHVDEALTLQQAAAADQRIASGNA-GVLTGIPIAHKDIFVTRNWRSTAGSKMLENYVSPF--DATVVENFNQAGMVTLGKLNCDEFAMGSSNENSYFGAVKNPWDKTAIPGGSSGGSAAAIAARLTPASTATDTGGSIRQPAALCGVTGIKPTYGRVSRFGMIAFASSLDQGGPIAKTAED 217          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_EXIS2 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=gatA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 9.416e-21
Identity = 67/195 (34.36%), Postives = 93/195 (47.69%), Query Frame = 2
Query:  149 KMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            K+  F++ NE+   +      +   +  P   L G+ I VKD I      TT G+K+L    P   DA  V RL   GAI +GK NM E   G+S  N  Y   RNP++   +                   +LG D GGS+R PAA CGVVG KPT+G +   G++    ++  +G L  TVED   + +AI G
Sbjct:   39 KIGAFLSLNEDAFEQAKRMDEIAKHEANP---LFGLPIGVKDNIVTKGMTTTCGSKFLENFVPAH-DATVVERLHEAGAITIGKLNMDEFAMGSSNENSAYKPVRNPWNTKHVPGGSSGGSAAAVAAGEVLFSLGSDTGGSIRQPAAYCGVVGLKPTYGLVSRYGLVAFASSLDQIGPLTRTVEDNAYLLSAIAG 229          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_CLOCE (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) GN=gatA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 9.416e-21
Identity = 73/264 (27.65%), Postives = 123/264 (46.59%), Query Frame = 2
Query:   38 RWTVLDYSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHK-VRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSISAIKLG 826
            R T+ +  K   + +I+   +   ++  +        K+  +++  E+  LKQA ++      G+  S+L G+ +++KD I      TT  +K L   V P T  A  V +L    A+++GKTN+ E   G S  N  + + +NP+D +++               L   +LG D GGSVR PA+ CGVVG KPT+G +   G++    +   +G +A TVED  ++  +I G  P    ++     S      +  I   K G
Sbjct:    5 RLTIKEARKLLDNREISALELTRTYLDRINTLDG---KVESYLSVTEDMALKQAEQAQNLIDYGKA-SLLTGIPLSIKDNICIEGTKTTCASKMLEDFVSPYTATA--VDKLFADNAVILGKTNLDEFAMGGSTENSAFKITKNPFDLTRVPGGSSGGSAACVSASLALGSLGSDTGGSVRQPASFCGVVGMKPTYGLVSRYGLVAFASSFDQIGPIAKTVEDCAIILDSICGNDPKDATSLKYENDSSYSSSVSGDIKGFKFG 262          
The following BLAST results are available for this feature:
BLAST of FC878075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_STAAM9.416e-2129.61Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_STAA19.416e-2129.61Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_RUBXD9.416e-2133.17Glutamyl-tRNA(Gln) amidotransferase subunit A OS=R... [more]
GATA_MYCGI9.416e-2130.77Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_METBF9.416e-2136.22Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_METAC9.416e-2138.04Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_LACS19.416e-2133.51Glutamyl-tRNA(Gln) amidotransferase subunit A OS=L... [more]
GATA_HERAR9.416e-2130.80Glutamyl-tRNA(Gln) amidotransferase subunit A OS=H... [more]
GATA_EXIS29.416e-2134.36Glutamyl-tRNA(Gln) amidotransferase subunit A OS=E... [more]
GATA_CLOCE9.416e-2127.65Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA35BB11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA35BB11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878075 ID=FC878075; Name=FC878075; organism=Citrus clementina; type=EST; length=849bp
TCTGCCTCTGTCTTCAGAAAAGCAGCCGTTTTTCCATCGCTGGACTGTAT
TAGATTATTCAAAAGCCTACAGTTCCGGAGATATTACTCCTCGTATGGTA
GCAGAGCGGTTTATAACCGCAGTACGTGAGTCTTCAAACCCTCCAATGAA
AATGTCATTCTTCATTAACAACAATGAAGAAGATATTCTAAAGCAAGCTA
CAGAGTCGACTCTTCGGTATAAAAAAGGAGAGCCAATATCGGTTCTAGAT
GGAGTCCTAATTGCAGTCAAGGATGAAATTGATTGTTCTCCTTACCCAAC
TACAGGAGGCACCAAGTGGTTGCATAAAGTTAGACCTTGCACAGGTGATG
CATGCTGCGTTATGCGCCTCAGATTGTGCGGCGCCATACTTGTTGGGAAA
ACTAATATGCATGAGCTCGGGGCTGGAACAAGTGGGATAAATCCTCATTA
TGGGGTCGCTAGAAATCCATACGACCCCAGCAAAATCACTGGGGGTTCTT
CTAGTGGATCAGCAGCAGTGGTGGCTGCAGGATTGTGCCCTGTCGCCCTT
GGTGTTGATGGAGGAGGATCCGTGCGGATGCCTGCAGCTCTCTGTGGTGT
TGTTGGTTTTAAGCCAACTTTCGGGCGCATACCTCTTTCTGGTGTTCTTC
CACTGAACTGGACAGTAGGAATGGTTGGAATTTTAGCAGCCACTGTAGAA
GATGCATTGGTTGTTTATGCAGCTATTAATGGTCCACTTCCTTCCCAACA
GCCCACTGTTTCATTGCCAAAAGTATCGTTCCCACTGCTGAAGTCTGCAA
CATCAATATCAGCCATCAAATTGGGCAAGTATGATGCGTGGTTCAACGA
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