FC878075

Overview
NameFC878075
Unique NameFC878075
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length849
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_LACRJ (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Lactobacillus reuteri (strain JCM 1112) GN=gatA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.606e-20
Identity = 66/191 (34.55%), Postives = 94/191 (49.21%), Query Frame = 2
Query:  161 FINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            FI+ NE+  LK+A E   +    + ++   GV +AVKD I      TT  +K L    P   DA  V +L     I VGKTN+ E   G+S  N  +    NP+D +++                   ALG D GGS+RMPA+  GVVG KPT+GR+   G++    +   VG L   V+D  ++ A I+G
Sbjct:   43 FISLNEDQALKRAAEIDAKGISADQLTA--GVPLAVKDNILTKGLTTTAASKMLENFNPVY-DATVVEKLNAADYINVGKTNLDEFAMGSSTENSAFFTTHNPWDLTRVPGGSSGGSAAAVAAGDVLGALGTDTGGSIRMPASFNGVVGMKPTYGRVSRWGIIAFGSSFDQVGWLTQNVKDNALLTALISG 230          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_LACRD (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Lactobacillus reuteri (strain DSM 20016) GN=gatA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.606e-20
Identity = 66/191 (34.55%), Postives = 94/191 (49.21%), Query Frame = 2
Query:  161 FINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            FI+ NE+  LK+A E   +    + ++   GV +AVKD I      TT  +K L    P   DA  V +L     I VGKTN+ E   G+S  N  +    NP+D +++                   ALG D GGS+RMPA+  GVVG KPT+GR+   G++    +   VG L   V+D  ++ A I+G
Sbjct:   43 FISLNEDQALKRAAEIDAKGISADQLTA--GVPLAVKDNILTKGLTTTAASKMLENFNPVY-DATVVEKLNAADYINVGKTNLDEFAMGSSTENSAFFTTHNPWDLTRVPGGSSGGSAAAVAAGDVLGALGTDTGGSIRMPASFNGVVGMKPTYGRVSRWGIIAFGSSFDQVGWLTQNVKDNALLTALISG 230          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_CHLL2 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=gatA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.606e-20
Identity = 68/255 (26.67%), Postives = 112/255 (43.92%), Query Frame = 2
Query:   83 ITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSISAIKLGKYDAWFN 847
            I+ R+  E+ +    E  +     + +I    E  +++A +   +  +G     L G+ +A+KD I       T  ++ L        DA  V RL    A+ +GKTNM E   G+S  N  +G   NP+D +++               L   ALG D GGSVR PA  C +VG KPT+GRI   G++    +   +G+LA   +DA +V   + G       +       +    +A  +  +K+G    +F+
Sbjct:   14 ISRRITCEKVVLDYLERIDRHRDDNIYITVFHEQAVEKARKLDKKLSEGGLPGKLFGMPMAIKDNISIKGAGLTCASRILENYESVY-DATAVQRLEAEDAVFLGKTNMDEFAMGSSNENSAFGAVPNPFDKTRVPGGSSGGSAAAVAAGLALAALGSDTGGSVRQPAGFCDIVGLKPTYGRISRYGLVAFASSFDQIGVLARNCDDASLVLGIMAGKDEHDATSSHRDVPDYAADMAAVRVEGLKIGVPKEYFH 267          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_BACP2 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Bacillus pumilus (strain SAFR-032) GN=gatA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.606e-20
Identity = 64/195 (32.82%), Postives = 92/195 (47.18%), Query Frame = 2
Query:  149 KMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            K+  F+  +EE     A E      + + + +L G+ I VKD I      TT  +K L    P   DA  V RLR    + +GK NM E   G+S  N  Y   +NP++ + +                 P +LG D GGS+R PA+ CGVVG KPT+GR+   G++    ++  +G +   VED   V  AI G
Sbjct:   39 KVQAFLALDEEKARAYAKELDEAVGEKDELGLLFGMPIGVKDNIVTKDLRTTASSKILQNFDPIY-DATVVNRLRDAEVVTIGKLNMDEFAMGSSTENSGYKATKNPWNLNTVPGGSSGGSAASVAAGEVPFSLGSDTGGSIRQPASFCGVVGLKPTYGRVSRYGLIAFASSLDQIGPITRNVEDNAYVLQAIAG 232          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: AMIA2_MYCTU (Putative amidase amiA2 OS=Mycobacterium tuberculosis GN=amiA2 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.606e-20
Identity = 69/185 (37.30%), Postives = 91/185 (49.19%), Query Frame = 2
Query:  179 EDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            E  L  A  +  R   G+   +L G+ IAVKD++D +  PT  GT+    V P T D   V RL+  GA++VGKTN  ELG       P +G  RNP+                    L   A+G DG GS+R+PAA   +VG KP  GRI    +      V + G+LA TVEDA +V  A +G
Sbjct:   64 ESALADAAAADKRRAAGDTAPLL-GIPIAVKDDVDVAGVPTAFGTQGY--VAPATDDCEVVRRLKAAGAVIVGKTNTCELGQWPFTSGPGFGHTRNPWSRRHTPGGSSGGSAAAVAAGLVTAAIGSDGAGSIRIPAAWTHLVGIKPQRGRISTWPLPEAFNGVTVNGVLARTVEDAALVLDAASG 245          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: AMIA2_MYCBO (Putative amidase amiA2 OS=Mycobacterium bovis GN=amiA2 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.606e-20
Identity = 69/185 (37.30%), Postives = 91/185 (49.19%), Query Frame = 2
Query:  179 EDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            E  L  A  +  R   G+   +L G+ IAVKD++D +  PT  GT+    V P T D   V RL+  GA++VGKTN  ELG       P +G  RNP+                    L   A+G DG GS+R+PAA   +VG KP  GRI    +      V + G+LA TVEDA +V  A +G
Sbjct:   64 ESALADAAAADKRRAAGDTAPLL-GIPIAVKDDVDVAGVPTAFGTQGY--VAPATDDCEVVRRLKAAGAVIVGKTNTCELGQWPFTSGPGFGHTRNPWSRRHTPGGSSGGSAAAVAAGLVTAAIGSDGAGSIRIPAAWTHLVGIKPQRGRISTWPLPEAFNGVTVNGVLARTVEDAALVLDAASG 245          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_STAAT (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=gatA PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.098e-20
Identity = 69/233 (29.61%), Postives = 111/233 (47.64%), Query Frame = 2
Query:   83 ITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSF 781
            I P  V +    A+ E+ +P +K   F+  ++E+ +K+A E      K +    L G+ + +KD I  +   TT  +K L    P   ++  + +L    A+L+GK NM E   G S    ++    NP+D   +               L P +LG D GGS+R PAA CGVVG KPT+GR+   G++    ++  +G L   V+D  +V  AI+G   +   +  +  V F
Sbjct:   20 IKPSDVVKDIYDAIEET-DPTIKS--FLALDKENAIKKAQELDELQAKDQMDGKLFGIPMGIKDNIITNGLETTCASKMLEGFVPIY-ESTVMEKLHNENAVLIGKLNMDEFAMGGSTETSYFKKTVNPFDHKAVPGGSSGGSAAAVAAGLVPFSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAIVLEAISGADVNDSTSAPVDDVDF 248          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_STAAE (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Staphylococcus aureus (strain Newman) GN=gatA PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.098e-20
Identity = 69/233 (29.61%), Postives = 111/233 (47.64%), Query Frame = 2
Query:   83 ITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSF 781
            I P  V +    A+ E+ +P +K   F+  ++E+ +K+A E      K +    L G+ + +KD I  +   TT  +K L    P   ++  + +L    A+L+GK NM E   G S    ++    NP+D   +               L P +LG D GGS+R PAA CGVVG KPT+GR+   G++    ++  +G L   V+D  +V  AI+G   +   +  +  V F
Sbjct:   20 IKPSDVVKDIYDAIEET-DPTIKS--FLALDKENAIKKAQELDELQAKDQMDGKLFGIPMGIKDNIITNGLETTCASKMLEGFVPIY-ESTVMEKLHNENAVLIGKLNMDEFAMGGSTETSYFKKTVNPFDHKAVPGGSSGGSAAAVAAGLVPFSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAIVLEAISGADVNDSTSAPVDDVDF 248          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_STAAC (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Staphylococcus aureus (strain COL) GN=gatA PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.098e-20
Identity = 69/233 (29.61%), Postives = 111/233 (47.64%), Query Frame = 2
Query:   83 ITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSF 781
            I P  V +    A+ E+ +P +K   F+  ++E+ +K+A E      K +    L G+ + +KD I  +   TT  +K L    P   ++  + +L    A+L+GK NM E   G S    ++    NP+D   +               L P +LG D GGS+R PAA CGVVG KPT+GR+   G++    ++  +G L   V+D  +V  AI+G   +   +  +  V F
Sbjct:   20 IKPSDVVKDIYDAIEET-DPTIKS--FLALDKENAIKKAQELDELQAKDQMDGKLFGIPMGIKDNIITNGLETTCASKMLEGFVPIY-ESTVMEKLHNENAVLIGKLNMDEFAMGGSTETSYFKKTVNPFDHKAVPGGSSGGSAAAVAAGLVPFSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAIVLEAISGADVNDSTSAPVDDVDF 248          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_STAA8 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Staphylococcus aureus (strain NCTC 8325) GN=gatA PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.098e-20
Identity = 69/233 (29.61%), Postives = 111/233 (47.64%), Query Frame = 2
Query:   83 ITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSF 781
            I P  V +    A+ E+ +P +K   F+  ++E+ +K+A E      K +    L G+ + +KD I  +   TT  +K L    P   ++  + +L    A+L+GK NM E   G S    ++    NP+D   +               L P +LG D GGS+R PAA CGVVG KPT+GR+   G++    ++  +G L   V+D  +V  AI+G   +   +  +  V F
Sbjct:   20 IKPSDVVKDIYDAIEET-DPTIKS--FLALDKENAIKKAQELDELQAKDQMDGKLFGIPMGIKDNIITNGLETTCASKMLEGFVPIY-ESTVMEKLHNENAVLIGKLNMDEFAMGGSTETSYFKKTVNPFDHKAVPGGSSGGSAAAVAAGLVPFSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAIVLEAISGADVNDSTSAPVDDVDF 248          
The following BLAST results are available for this feature:
BLAST of FC878075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_LACRJ1.606e-2034.55Glutamyl-tRNA(Gln) amidotransferase subunit A OS=L... [more]
GATA_LACRD1.606e-2034.55Glutamyl-tRNA(Gln) amidotransferase subunit A OS=L... [more]
GATA_CHLL21.606e-2026.67Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_BACP21.606e-2032.82Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
AMIA2_MYCTU1.606e-2037.30Putative amidase amiA2 OS=Mycobacterium tuberculos... [more]
AMIA2_MYCBO1.606e-2037.30Putative amidase amiA2 OS=Mycobacterium bovis GN=a... [more]
GATA_STAAT2.098e-2029.61Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_STAAE2.098e-2029.61Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_STAAC2.098e-2029.61Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_STAA82.098e-2029.61Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA35BB11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA35BB11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878075 ID=FC878075; Name=FC878075; organism=Citrus clementina; type=EST; length=849bp
TCTGCCTCTGTCTTCAGAAAAGCAGCCGTTTTTCCATCGCTGGACTGTAT
TAGATTATTCAAAAGCCTACAGTTCCGGAGATATTACTCCTCGTATGGTA
GCAGAGCGGTTTATAACCGCAGTACGTGAGTCTTCAAACCCTCCAATGAA
AATGTCATTCTTCATTAACAACAATGAAGAAGATATTCTAAAGCAAGCTA
CAGAGTCGACTCTTCGGTATAAAAAAGGAGAGCCAATATCGGTTCTAGAT
GGAGTCCTAATTGCAGTCAAGGATGAAATTGATTGTTCTCCTTACCCAAC
TACAGGAGGCACCAAGTGGTTGCATAAAGTTAGACCTTGCACAGGTGATG
CATGCTGCGTTATGCGCCTCAGATTGTGCGGCGCCATACTTGTTGGGAAA
ACTAATATGCATGAGCTCGGGGCTGGAACAAGTGGGATAAATCCTCATTA
TGGGGTCGCTAGAAATCCATACGACCCCAGCAAAATCACTGGGGGTTCTT
CTAGTGGATCAGCAGCAGTGGTGGCTGCAGGATTGTGCCCTGTCGCCCTT
GGTGTTGATGGAGGAGGATCCGTGCGGATGCCTGCAGCTCTCTGTGGTGT
TGTTGGTTTTAAGCCAACTTTCGGGCGCATACCTCTTTCTGGTGTTCTTC
CACTGAACTGGACAGTAGGAATGGTTGGAATTTTAGCAGCCACTGTAGAA
GATGCATTGGTTGTTTATGCAGCTATTAATGGTCCACTTCCTTCCCAACA
GCCCACTGTTTCATTGCCAAAAGTATCGTTCCCACTGCTGAAGTCTGCAA
CATCAATATCAGCCATCAAATTGGGCAAGTATGATGCGTGGTTCAACGA
back to top