FC878075

Overview
NameFC878075
Unique NameFC878075
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length849
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_STAA3 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Staphylococcus aureus (strain USA300) GN=gatA PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.098e-20
Identity = 69/233 (29.61%), Postives = 111/233 (47.64%), Query Frame = 2
Query:   83 ITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSF 781
            I P  V +    A+ E+ +P +K   F+  ++E+ +K+A E      K +    L G+ + +KD I  +   TT  +K L    P   ++  + +L    A+L+GK NM E   G S    ++    NP+D   +               L P +LG D GGS+R PAA CGVVG KPT+GR+   G++    ++  +G L   V+D  +V  AI+G   +   +  +  V F
Sbjct:   20 IKPSDVVKDIYDAIEET-DPTIKS--FLALDKENAIKKAQELDELQAKDQMDGKLFGIPMGIKDNIITNGLETTCASKMLEGFVPIY-ESTVMEKLHNENAVLIGKLNMDEFAMGGSTETSYFKKTVNPFDHKAVPGGSSGGSAAAVAAGLVPFSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAIVLEAISGADVNDSTSAPVDDVDF 248          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_PSE14 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=gatA PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.098e-20
Identity = 72/262 (27.48%), Postives = 122/262 (46.56%), Query Frame = 2
Query:   62 KAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSISAIKLGKYDAWFN 847
            K +SS ++T R++  R  T          +++ FI+  E+  + QA  +  R   GE   +L G  +A KD        T+ G++ L   +    DA  V +L   G + +GKTNM E   G++  + HYG  +NP++   +               L P A G D GGS+R PAAL  + G KPT+GR+   G++    ++   G +A T ED  ++   + G  P    ++  P   +    + TS+  +++G    +F+
Sbjct:   16 KKFSSEELT-RVLLSRIATL-------DPQLNSFISLTEDLAITQAQAADARRAAGENGPLL-GAPLAHKDLFCTQGIRTSCGSRMLDNFK-APYDATVVSKLASAGTVTLGKTNMDEFAMGSANESSHYGAVKNPWNLQCVPGGSSGGSAAAVAARLLPAATGTDTGGSIRQPAALTNLTGLKPTYGRVSRWGMIAYASSLDQAGPMARTAEDCALLLQGMAGFDPQDSTSIDEPVPDYSASLN-TSLKGLRIGVPKEYFS 266          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_PROMM (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Prochlorococcus marinus (strain MIT 9313) GN=gatA PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.098e-20
Identity = 66/202 (32.67%), Postives = 98/202 (48.51%), Query Frame = 2
Query:  227 GEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATS--ISAIKLG 826
            GE +  L GV +A+KD +      TT  ++ L    P   ++    RL   GA+L+GKTN+ E   G+S     +G   NP+D S++                C  ALG D GGS+R PA+ CGVVG KPT+GR+   G++    ++  VG     V DA  +   I G  P     ++   V+ P   SA S  +S +++G
Sbjct:   60 GESLPPLAGVPLAIKDNLCTKGIRTTCSSRMLETFVP-PYESTVTERLWQAGAVLLGKTNLDEFAMGSSTETSAFGATSNPWDISRVPGGSSGGSAAAVAAGECMAALGSDTGGSIRQPASFCGVVGLKPTYGRVSRWGLVAFASSLDQVGPFTTNVADAAELLQVIAGSDPRDSTCLN---VAVPDYCSALSQPMSGVRIG 257          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_PROM3 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Prochlorococcus marinus (strain MIT 9303) GN=gatA PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.098e-20
Identity = 66/202 (32.67%), Postives = 98/202 (48.51%), Query Frame = 2
Query:  227 GEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATS--ISAIKLG 826
            GE +  L GV +A+KD +      TT  ++ L    P   ++    RL   GA+L+GKTN+ E   G+S     +G   NP+D S++                C  ALG D GGS+R PA+ CGVVG KPT+GR+   G++    ++  VG     V DA  +   I G  P     ++   V+ P   SA S  +S +++G
Sbjct:   60 GESLPPLAGVPLAIKDNLCTKGIRTTCSSRMLETFVP-PYESTVTERLWQAGAVLLGKTNLDEFAMGSSTETSAFGATSNPWDISRVPGGSSGGSAAAVAAGECMAALGSDTGGSIRQPASFCGVVGLKPTYGRVSRWGLVAFASSLDQVGPFTTNVADAAELLQVIAGSDPRDSTCLN---VAVPDYCSALSQPMSGVRIG 257          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_GEOMG (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=gatA PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.098e-20
Identity = 73/243 (30.04%), Postives = 114/243 (46.91%), Query Frame = 2
Query:  101 AERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSAT-SISAIKLG 826
            A R + A  E+ +P  K++ +I    E+ L  A  +  R   G+ ++ L G+ +A+KD        TT  +K L    P   D   V +L+  GA++VGK N  E   G+SG +  +G  RNP++   I                    LG D GGS+R PA+ CG VG +PT+GR+   GV+    ++  VG +   V D  ++  A+ G  P    +V +P   +   K  T  +  +KLG
Sbjct:   25 ATRAMLARIEAVDP--KVNAYITVTPEEALAAAEAADRRIAAGD-MAPLTGIPVALKDIFVTKGIRTTCASKILDNFVP-PYDGTAVAKLKEAGAVIVGKLNQDEFAMGSSGESSAFGPTRNPWNLECIPGGSSSGSAAAIAARTATATLGTDTGGSIRQPASHCGCVGLRPTYGRVSRYGVIAYASSLDQVGPVTRDVTDCALMLQAVAGHDPMDSTSVEVPVPDY--AKGLTGDVKGLKLG 261          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_BORPD (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=gatA PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.098e-20
Identity = 69/229 (30.13%), Postives = 106/229 (46.29%), Query Frame = 2
Query:   47 VLDYSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            + +   A +   ++ R +A   + A + + +    ++ F++ + +  L QA  +      G     L GV IA KD      + TT G+K L        DA  V RL+  GA+ +GK N  E   G++  N  YG  RNP+DP+ +               L   A G D GGSVR PAALCGV G KPT+G +   G++    ++   G LA +  D L +   ++G
Sbjct:   13 IAELRAALAGRQVSARELARSALDAAQAAGD----LNTFLHIDPDLTLAQADAADAALAAGTA-GPLAGVPIAHKDAFVTRGWRTTAGSKMLEGYAS-PFDATVVQRLQAAGAVSLGKLNCDEFAMGSANENSAYGPVRNPWDPNAVPGGSSGGSAAAVAARLVAAATGTDTGGSVRQPAALCGVSGIKPTYGTVSRYGIVAFGSSLDQAGPLAPSSRDLLELLDPMSG 235          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_RUTMC (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Ruthia magnifica subsp. Calyptogena magnifica GN=gatA PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.740e-20
Identity = 66/234 (28.21%), Postives = 110/234 (47.01%), Query Frame = 2
Query:   35 HRWTVLDYSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHK-VRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            H  T+++ ++ +   D +   + + ++  + +S      ++ FI   +E  L QA  +  +   G   ++L G+  A KD        T+ G++ L   V P   DA    +L     +++GKTNM E   G+S  N  YG  +NP++  KI               L   A G D GGS+R PA+LCG+ G KPT+GRI   G++    ++   G +  T +DA +V   + G
Sbjct:    2 HTKTIVELAQGFKDKDFSCVELTQYYLNRIDQSD-----LNAFITVTDELALAQAQVADDKIASGNA-NILTGIPYAHKDIFCTKGVKTSAGSRMLDTFVSPY--DATVSQKLNQVNLVMLGKTNMDEFAMGSSNENSFYGAVKNPWNYLKIPGGSSGGSAASVAGGLSCFATGTDTGGSIRQPASLCGITGIKPTYGRISRYGMIAYASSLDQAGPMTKTAQDAAIVLNVMAG 227          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_PSEU2 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Pseudomonas syringae pv. syringae (strain B728a) GN=gatA PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.740e-20
Identity = 73/262 (27.86%), Postives = 121/262 (46.18%), Query Frame = 2
Query:   62 KAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSISAIKLGKYDAWFN 847
            K +SS ++T R++  R  T          +++ FI+  E+  + QA  +  R   GE   +L G  +A KD        T+ G+  L   +    DA  V RL   G + +GKTNM E   G++  + HYG  +NP++   +               L P A G D GGS+R PAAL  + G KPT+GR+   G++    ++   G +A T ED  ++   + G  P    ++  P   +    + TS+  +++G    +F+
Sbjct:   16 KKFSSEELT-RVLLSRIATL-------DPQLNSFISLTEDLAITQAQAADARRAAGENGPLL-GAPLAHKDLFCTQGIRTSCGSLMLDNFK-APYDATVVSRLASAGTVTLGKTNMDEFAMGSANESSHYGAVKNPWNLECVPGGSSGGSAAAVAARLLPAATGTDTGGSIRQPAALTNLTGLKPTYGRVSRWGMIAYASSLDQAGPMARTAEDCALLLQGMAGFDPQDSTSIDEPVPDYSASLN-TSLKGLRIGVPKEYFS 266          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_PSEE4 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Pseudomonas entomophila (strain L48) GN=gatA PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.740e-20
Identity = 72/270 (26.67%), Postives = 122/270 (45.19%), Query Frame = 2
Query:   35 HRWTVLDYSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSISAIKLGKYDAWF 844
            H+ T+ + ++  +    +   +    ++ +++      +++ FI   EE  L QA  +  R   GE  ++L G  IA KD        T+ G+K L        DA  V +L   G + +GKTNM E   G++  + HYG  +NP++   +               L P   G D GGS+R PAAL  + G KPT+GR+   G++    ++   G LA T ED  ++   + G       +V  P  +F    +A S+  +++G    +F
Sbjct:    2 HQLTLAEIARGLADKSFSSEELTGALLSRIKQLDP---QLNSFITVTEEQALHQARAADARRAAGETGALL-GAPIAHKDLFCTQGVRTSCGSKMLDNFT-APYDATVVAKLAEAGMVTLGKTNMDEFAMGSANESSHYGAVKNPWNLEHVPGGSSGGSAAAVAARLLPATTGTDTGGSIRQPAALTNLTGLKPTYGRVSRWGMIAYASSLDQGGPLARTAEDCALLLQGMAGFDSKDSTSVEEPVPNFSADLNA-SLQGLRIGLPKEYF 265          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_DESPS (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Desulfotalea psychrophila GN=gatA PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.740e-20
Identity = 68/219 (31.05%), Postives = 106/219 (48.40%), Query Frame = 2
Query:  161 FINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHK-VRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING--PLPSQQPTVSLPKVSFPLLKSATSI 808
            FI  +EE  L QA  +    + GE  + L G+ +++KD +     P T G+K L K + P   +A  V +L+  GA+ +GK  M E   G++     +GV +NP+    +                C  ++G D GGS+R PAALCGVVG KPT+GR+   G+     ++   G L  TV D  +V  +I G  P+ S      +P  +  L++    +
Sbjct:   43 FITVDEEGALAQAKAADKALQNGET-NPLCGIPMSIKDLLAVKDLPMTCGSKMLEKFIAPY--NATIVDKLQGAGAVNLGKVTMDEFAMGSTSETCAFGVPQNPWKEGYVAGGSSGGSAVTVAAQECFFSIGTDTGGSIRQPAALCGVVGMKPTYGRVSRYGLTAFASSLDQAGPLCRTVADTALVMNSICGYDPMDSTSINQEVPDYTASLVEGVKGL 258          
The following BLAST results are available for this feature:
BLAST of FC878075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_STAA32.098e-2029.61Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_PSE142.098e-2027.48Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]
GATA_PROMM2.098e-2032.67Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]
GATA_PROM32.098e-2032.67Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]
GATA_GEOMG2.098e-2030.04Glutamyl-tRNA(Gln) amidotransferase subunit A OS=G... [more]
GATA_BORPD2.098e-2030.13Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_RUTMC2.740e-2028.21Glutamyl-tRNA(Gln) amidotransferase subunit A OS=R... [more]
GATA_PSEU22.740e-2027.86Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]
GATA_PSEE42.740e-2026.67Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]
GATA_DESPS2.740e-2031.05Glutamyl-tRNA(Gln) amidotransferase subunit A OS=D... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA35BB11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA35BB11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878075 ID=FC878075; Name=FC878075; organism=Citrus clementina; type=EST; length=849bp
TCTGCCTCTGTCTTCAGAAAAGCAGCCGTTTTTCCATCGCTGGACTGTAT
TAGATTATTCAAAAGCCTACAGTTCCGGAGATATTACTCCTCGTATGGTA
GCAGAGCGGTTTATAACCGCAGTACGTGAGTCTTCAAACCCTCCAATGAA
AATGTCATTCTTCATTAACAACAATGAAGAAGATATTCTAAAGCAAGCTA
CAGAGTCGACTCTTCGGTATAAAAAAGGAGAGCCAATATCGGTTCTAGAT
GGAGTCCTAATTGCAGTCAAGGATGAAATTGATTGTTCTCCTTACCCAAC
TACAGGAGGCACCAAGTGGTTGCATAAAGTTAGACCTTGCACAGGTGATG
CATGCTGCGTTATGCGCCTCAGATTGTGCGGCGCCATACTTGTTGGGAAA
ACTAATATGCATGAGCTCGGGGCTGGAACAAGTGGGATAAATCCTCATTA
TGGGGTCGCTAGAAATCCATACGACCCCAGCAAAATCACTGGGGGTTCTT
CTAGTGGATCAGCAGCAGTGGTGGCTGCAGGATTGTGCCCTGTCGCCCTT
GGTGTTGATGGAGGAGGATCCGTGCGGATGCCTGCAGCTCTCTGTGGTGT
TGTTGGTTTTAAGCCAACTTTCGGGCGCATACCTCTTTCTGGTGTTCTTC
CACTGAACTGGACAGTAGGAATGGTTGGAATTTTAGCAGCCACTGTAGAA
GATGCATTGGTTGTTTATGCAGCTATTAATGGTCCACTTCCTTCCCAACA
GCCCACTGTTTCATTGCCAAAAGTATCGTTCCCACTGCTGAAGTCTGCAA
CATCAATATCAGCCATCAAATTGGGCAAGTATGATGCGTGGTTCAACGA
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