FC878075

Overview
NameFC878075
Unique NameFC878075
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length849
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_CELJU (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Cellvibrio japonicus (strain Ueda107) GN=gatA PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.740e-20
Identity = 67/228 (29.39%), Postives = 107/228 (46.93%), Query Frame = 2
Query:   35 HRWTVLDYSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHK-VRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVV 715
            H++T+ +  K   + D +   + + ++  +    N     + +I    +  L+QA  +  R   G   S L GV IA KD    +   T+  +K L K + P   +A  V      G +++GKTNM E   G+S     YG  +NP++   +               L P A   D GGS+R PAALCG+ G KPT+GR+   G++    ++   GIL+ T EDA ++
Sbjct:    2 HQFTIAELVKGLRNKDFSSTEITQHYLDRIARLDNT---YNSYITVTGDVALQQAAAADKRLAAGNT-SALCGVPIAHKDIFCTAGVRTSCASKMLDKFIAPY--NATIVENYLKAGVVMLGKTNMDEFAMGSSNETSWYGPVKNPWNTHCVPGGSSGGSAAAVAAHLAPAATASDTGGSIRQPAALCGLTGIKPTYGRVSRWGMIAFASSLDQAGILSRTAEDAALL 223          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_BACHD (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Bacillus halodurans GN=gatA PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.740e-20
Identity = 66/205 (32.20%), Postives = 95/205 (46.34%), Query Frame = 2
Query:  161 FINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING--PLPSQQPTVSLP 769
            F+  NEE     A E      + E   +L G+ I VKD I      TT  ++ L    P   DA  V +LR   A+ +GK NM E   G+S  N  +   +NP++   +                 P  LG D GGS+R PAA CGVVG KPT+GR+   G++    ++  +G +   VED   +  AI+G  P+ S    + +P
Sbjct:   43 FLALNEEKARAYAKELDAALDRSEARGLLFGIPIGVKDNIVTKNLRTTCSSRILGNFDPIY-DATVVHKLREAQAVTIGKLNMDEFAMGSSTENSAFQKTKNPWNLEYVPGGSSGGSAAAVAAGEVPFTLGSDTGGSIRQPAAYCGVVGLKPTYGRVSRYGLVAFASSLDQIGPITRNVEDNAYLLQAISGHDPMDSTSANLDVP 246          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_STRSV (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Streptococcus sanguinis (strain SK36) GN=gatA PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.578e-20
Identity = 64/194 (32.99%), Postives = 99/194 (51.03%), Query Frame = 2
Query:  161 FINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLP 742
            FI  +EE+ L QA  + L  K  +  +++ G+ +AVKD I      TT  +K L+  +P   DA  V +L     I+VGKTNM E   G S  N ++   +N +D SK+                  ++LG D GGS+R PA+  GVVG KPT+GR+   G++    ++  +G  + TV++   +   I+G  P
Sbjct:   43 FITVSEEEALAQA--AALDAKGIDADNLMSGIPLAVKDNISTKGILTTAASKILYNYKPIF-DATSVEKLYGKDMIIVGKTNMDEFAMGGSSENSYFKTTKNAWDSSKVPGGSSGGSATAVASGQVRLSLGSDTGGSIRQPASFNGVVGLKPTYGRVSRFGLIAFGSSLDQIGPFSQTVKENAQLLNVISGNDP 233          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_PSYWF (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Psychrobacter sp. (strain PRwf-1) GN=gatA PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.578e-20
Identity = 63/196 (32.14%), Postives = 95/196 (48.47%), Query Frame = 2
Query:  149 KMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHK-VRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            K++ FI  +EE   + A ++  R   G+  SVL G+ +A KD        TT G+K LH  V P   DA  V  +R  GA+ +GK NM E   G+   + +YG   NP+D S++                 P A G D GGS+R PA+ CG+ G KPT+GR+   G++    ++   G    + +D   +   + G
Sbjct:   40 KVNSFITIDEEGARQAAQQADDRRSAGDN-SVLLGLPMAHKDLFCTKGLLTTSGSKILHNFVSPY--DATIVSNIREAGAVCLGKLNMDEFAMGSDNESSYYGAVHNPWDLSRVPGGSSGGSAAAVAAGFVPFATGSDTGGSIRQPASFCGLTGIKPTYGRVSRFGMIAYASSLDQAGTFGRSAQDCAYLLQPMAG 232          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_PSEMY (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Pseudomonas mendocina (strain ymp) GN=gatA PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.578e-20
Identity = 72/270 (26.67%), Postives = 125/270 (46.30%), Query Frame = 2
Query:   35 HRWTVLDYSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSISAIKLGKYDAWF 844
            H+ T+ + +K   +   +   ++   +  + +      +++ FI   E+  ++QA  +  R   GE  ++L G  IA KD    +   T+ G+K L   +    DA  V +L+  G + +GK NM E   G++  + HYG  +NP+D S++               L P A G D GGS+R PAAL  + G KPT+GR+   G++    ++   G LA    D  ++  A+ G       +V  P V   L   A  ++ +++G    +F
Sbjct:    2 HQMTLAEIAKGLEAKQFSAEELSRALLARIAQLDP---QLNSFITVTEDLAIEQAKAADARRAAGENGALL-GAPIAHKDLFCTNGVLTSCGSKILTGFK-APYDATVVEKLKAAGTVTLGKLNMDEFAMGSANESSHYGAVKNPWDTSRVPGGSSGGSAAAVAARLLPAATGTDTGGSIRQPAALTNLTGIKPTYGRVSRWGMIAYASSLDQGGPLARDAFDCALLLGAMAGFDAKDSTSVDQP-VDDYLAALAQPLAGLRIGLPKEYF 265          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_NEIG1 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=gatA PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.578e-20
Identity = 70/249 (28.11%), Postives = 116/249 (46.59%), Query Frame = 2
Query:   38 RWTVLDYSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHK-VRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSF 781
            ++T+        S  I+   +A  ++ A+ E  NP +  + +I  +++  L +A  +  R  +G   S L GV +A KD    + + +   +K L   + P T  A  V  L   G + +G+TNM E   G++  N  YG A+NP++P  +               L P ALG D GGS+R PA+ CG+ G KPT+G +   G++    +    G +A T ED  ++  A+ G  P    +    K  +
Sbjct:    3 QYTLKQAGSLLQSKQISAVELASAYLAAIAEK-NPAL--NGYITIDQDKTLAEARAADERIAQGNA-SALTGVPVAYKDIFCQTGWRSACASKMLDNFIFPYT--ATVVQNLLDEGMVTLGRTNMDEFAMGSTNENSFYGAAKNPWNPEHVPGGSSGGSAAVVAARLAPAALGSDTGGSIRQPASHCGITGIKPTYGTVSRFGMVAYASSFDQAGPMAQTAEDCAILLNAMAGFDPKDSTSFEREKEDY 245          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_METFK (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=gatA PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.578e-20
Identity = 66/222 (29.73%), Postives = 109/222 (49.10%), Query Frame = 2
Query:   71 SSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHK-VRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            +S +I+   + + ++  + +  NP  +++ +I  N E  L QA  +  R   G+    L G+ IA KD      + TT G++ L   + P   DA  + R    GA+ +GKTNM E   G+S    ++G  +NP+D S++               LC  A G D GGS+R PA+LCG+ G KPT+G     G++    ++   G +A + ED  ++   + G
Sbjct:   14 ASKEISSVELTQEYLNRIAQL-NP--EINAYITVNPELSLAQAQAADQRIANGDA-GPLTGIPIAQKDIFCAKGWRTTCGSRMLENFIAPY--DAGIIERFNAAGAVNLGKTNMDEFAMGSSNETSYFGKVQNPWDRSRVPGGSSGGSAAAVAARLCAAATGTDTGGSIRQPASLCGLSGLKPTYGLASRYGMIAFASSLDQAGPMAHSAEDMALMMNVMTG 229          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_LISIN (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Listeria innocua GN=gatA PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.578e-20
Identity = 76/237 (32.07%), Postives = 112/237 (47.26%), Query Frame = 2
Query:   80 DITP-RMVAERF--ITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSF 781
            +ITP  +V E F  I AV +      K+  FI  N+E  L  A E  L     +P ++L G+ I +KD I      TT  +K L    P   DA  V +L+    I +GK NM E   G+S    ++    NP+D S++                   +LG D GGS+R PAA CGVVG KPT+GR+   G++    ++  +G +   VED   +  AI+G   +   +++ P   F
Sbjct:   19 EITPFDLVTESFNRIEAVED------KVGSFITLNKETALGVAEE--LGDAGIDPNNMLAGLPIGIKDNIVTKNLRTTAASKILENFDPIY-DATVVSKLKNAQTINIGKLNMDEFAMGSSTETSYFHKTHNPWDLSRVPGGSSGGSASAVAAGEVLFSLGSDTGGSIRQPAAFCGVVGMKPTYGRVSRFGLIAFASSLDQIGPITKNVEDNAYLLEAISGLDANDSTSINQPVERF 246          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_LACF3 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Lactobacillus fermentum (strain IFO 3956 / LMG 18251) GN=gatA PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.578e-20
Identity = 70/222 (31.53%), Postives = 103/222 (46.40%), Query Frame = 2
Query:  161 FINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPL-LKSATSISAIKL 823
            F+  NEE  LKQA E  L         +L G+ +AVKD I      TT  +K L   +P   DA  V +L   G I VGK N+ E   G+S  N  +   +NP+D +++                   ALG D GGS+R+PA+  G VG KPT+GR+   G++    +   +G L  +V+D  ++ +AI G       + + P   F   L     I  +K+
Sbjct:   43 FLALNEEAALKQAAE--LDQAGIAEDQLLAGIPLAVKDNIVTKGLTTTAASKILENFKPVY-DATVVEKLNAAGVINVGKVNLDEFAMGSSTENSAFKTTKNPWDLTRVPGGSSGGSAAAVAAGDVLGALGSDTGGSIRIPASFTGTVGMKPTYGRVSRWGLIAFGSSFDQIGWLTQSVKDNAILMSAIAGKDDRDMTSANQPVPDFAAGLNDQADIKGMKI 261          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_DICDI (Glutamyl-tRNA(Gln) amidotransferase subunit A homolog OS=Dictyostelium discoideum GN=gatA PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.578e-20
Identity = 68/206 (33.01%), Postives = 97/206 (47.09%), Query Frame = 2
Query:  143 PMKMSFFINNNEEDIL-KQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSK-----------------ITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDA 706
            P  ++ FI+  +E  L KQ  ES  RY  G     LDG+ I VKD      + TT G+K L    P + D+  V  L+  GAI++GKTNM E   G+S  + H+G   NP+                     +                C  ++G D GGS+R P++ CGVVGFKP++G I   G++    ++   G+L   VEDA
Sbjct:   37 PNHLNTFISLQDEKSLGKQIKESQERYDNGTN-KRLDGIPIGVKDNFSSKNFKTTCGSKILENYIP-SFDSTVVKLLKEEGAIIIGKTNMDEFSMGSSSTSGHFGKVINPWSKPNNNNNNDNDNNNNGEVLYVAGGSSGGSAAAVASNYCVASIGSDTGGSIRQPSSYCGVVGFKPSYGLISRFGLVAYASSLDTPGVLTNNVEDA 240          
The following BLAST results are available for this feature:
BLAST of FC878075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_CELJU2.740e-2029.39Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_BACHD2.740e-2032.20Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_STRSV3.578e-2032.99Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_PSYWF3.578e-2032.14Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]
GATA_PSEMY3.578e-2026.67Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]
GATA_NEIG13.578e-2028.11Glutamyl-tRNA(Gln) amidotransferase subunit A OS=N... [more]
GATA_METFK3.578e-2029.73Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_LISIN3.578e-2032.07Glutamyl-tRNA(Gln) amidotransferase subunit A OS=L... [more]
GATA_LACF33.578e-2031.53Glutamyl-tRNA(Gln) amidotransferase subunit A OS=L... [more]
GATA_DICDI3.578e-2033.01Glutamyl-tRNA(Gln) amidotransferase subunit A homo... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA35BB11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA35BB11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878075 ID=FC878075; Name=FC878075; organism=Citrus clementina; type=EST; length=849bp
TCTGCCTCTGTCTTCAGAAAAGCAGCCGTTTTTCCATCGCTGGACTGTAT
TAGATTATTCAAAAGCCTACAGTTCCGGAGATATTACTCCTCGTATGGTA
GCAGAGCGGTTTATAACCGCAGTACGTGAGTCTTCAAACCCTCCAATGAA
AATGTCATTCTTCATTAACAACAATGAAGAAGATATTCTAAAGCAAGCTA
CAGAGTCGACTCTTCGGTATAAAAAAGGAGAGCCAATATCGGTTCTAGAT
GGAGTCCTAATTGCAGTCAAGGATGAAATTGATTGTTCTCCTTACCCAAC
TACAGGAGGCACCAAGTGGTTGCATAAAGTTAGACCTTGCACAGGTGATG
CATGCTGCGTTATGCGCCTCAGATTGTGCGGCGCCATACTTGTTGGGAAA
ACTAATATGCATGAGCTCGGGGCTGGAACAAGTGGGATAAATCCTCATTA
TGGGGTCGCTAGAAATCCATACGACCCCAGCAAAATCACTGGGGGTTCTT
CTAGTGGATCAGCAGCAGTGGTGGCTGCAGGATTGTGCCCTGTCGCCCTT
GGTGTTGATGGAGGAGGATCCGTGCGGATGCCTGCAGCTCTCTGTGGTGT
TGTTGGTTTTAAGCCAACTTTCGGGCGCATACCTCTTTCTGGTGTTCTTC
CACTGAACTGGACAGTAGGAATGGTTGGAATTTTAGCAGCCACTGTAGAA
GATGCATTGGTTGTTTATGCAGCTATTAATGGTCCACTTCCTTCCCAACA
GCCCACTGTTTCATTGCCAAAAGTATCGTTCCCACTGCTGAAGTCTGCAA
CATCAATATCAGCCATCAAATTGGGCAAGTATGATGCGTGGTTCAACGA
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