FC878075

Overview
NameFC878075
Unique NameFC878075
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length849
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_ACIC5 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) GN=gatA PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.578e-20
Identity = 64/194 (32.99%), Postives = 88/194 (45.36%), Query Frame = 2
Query:  245 LDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSISAIKLG 826
            + GV   +KD +     P T  +K L   RP    A  V RL   GA+LVGK N  E   G+S  N  YG  +NP    ++               +    LG D GGS+R PA+ CGVVG  PT+GR+   G++    ++  VG  A TV DA  V   I G  P    + S+P   +   K    +  ++LG
Sbjct:   69 MGGVPFGIKDVLTVEGMPATASSKILEGYRP-PYTATAVQRLIDAGAVLVGKLNCDEFAMGSSNENSAYGPVKNPRALDRVPGGSSGGSAAAVAANMAVATLGTDTGGSIRQPASFCGVVGVLPTYGRVSRYGLIAFASSLDRVGPFAHTVRDAAEVLGVIAGHDPMDATSSSVPVPDY-TEKLDAGVKGLRLG 260          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: AMID_RHOER (Amidase OS=Rhodococcus erythropolis GN=amdA PE=1 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 3.578e-20
Identity = 57/164 (34.76%), Postives = 81/164 (49.39%), Query Frame = 2
Query:  242 VLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            VL G  +A+KD +  +  P   G++ +    P + DA  V RL   GA + GK    +L    S   P  G  RNP+D  +                    A+G D GGS+R+PAA CGVVG KPTFG +P +G  P+  T+  +G +  TV DA ++ + I G
Sbjct:   87 VLTGRRVAIKDNVTVAGVPMMNGSRTVEGFTP-SRDATVVTRLLAAGATVAGKAVCEDLCFSGSSFTPASGPVRNPWDRQREAGGSSGGSAALVANGDVDFAIGGDQGGSIRIPAAFCGVVGHKPTFGLVPYTGAFPIERTIDHLGPITRTVHDAALMLSVIAG 249          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_STAES (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Staphylococcus epidermidis (strain ATCC 12228) GN=gatA PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.673e-20
Identity = 67/234 (28.63%), Postives = 112/234 (47.86%), Query Frame = 2
Query:   80 DITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSF 781
            +I P  V +    A+ E+ +P +K   F+  ++E+ +K+A E      K +    L G+ + +KD I      TT  +K L    P   ++  + +L    A+L+GK NM E   G S    ++    NP+D + +               L P +LG D GGS+R PA+ CGVVG KPT+GR+   G++    ++  +G +   V+D  +V  AI+G   +   +  +  V F
Sbjct:   19 EIKPSDVVKDIYAAIEET-DPTIKS--FLALDKENAIKKAEELDELQAKDQMDGKLFGIPMGIKDNIITKDVETTCASKMLEGFVPIY-ESTVMNKLHDENAVLIGKLNMDEFAMGGSTETSYFKKTLNPFDHTAVPGGSSGGSAAAVAAGLVPFSLGSDTGGSIRQPASYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPITRNVKDNALVLEAISGVDANDSTSAPVDDVDF 248          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_STAEQ (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=gatA PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.673e-20
Identity = 67/234 (28.63%), Postives = 112/234 (47.86%), Query Frame = 2
Query:   80 DITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSF 781
            +I P  V +    A+ E+ +P +K   F+  ++E+ +K+A E      K +    L G+ + +KD I      TT  +K L    P   ++  + +L    A+L+GK NM E   G S    ++    NP+D + +               L P +LG D GGS+R PA+ CGVVG KPT+GR+   G++    ++  +G +   V+D  +V  AI+G   +   +  +  V F
Sbjct:   19 EIKPSDVVKDIYAAIEET-DPTIKS--FLALDKENAIKKAEELDELQAKDQMDGKLFGIPMGIKDNIITKDVETTCASKMLEGFVPIY-ESTVMNKLHDENAVLIGKLNMDEFAMGGSTETSYFKKTLNPFDHTAVPGGSSGGSAAAVAAGLVPFSLGSDTGGSIRQPASYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPITRNVKDNALVLEAISGVDANDSTSAPVDDVDF 248          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_STACT (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Staphylococcus carnosus (strain TM300) GN=gatA PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.673e-20
Identity = 67/225 (29.78%), Postives = 108/225 (48.00%), Query Frame = 2
Query:   59 SKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            S+   + +I P  V +    A+ E+ +P +K   F+  ++E+ +K+A E      K +    L G+ + +KD I      TT  +K L    P   ++  + +L    A+L+GK NM E   G S    +Y    NP+D + +               L P +LG D GGS+R PAA CG+VG KPT+GR+   G++    ++  +G L   V+D  +V   I G
Sbjct:   12 SEMIKNKEIKPSEVVKDIYDAIEET-DPTIKS--FLALDKENAMKKAEELDELQAKDQMEGKLFGIPMGIKDNIITEGLETTCASKMLEGFVPIY-ESTVMNKLHDENAVLIGKLNMDEFAMGGSTETSYYKKTVNPFDHTAVPGGSSGGSAAAVAAGLVPFSLGSDTGGSIRQPAAYCGIVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAIVLETIVG 232          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_RHOE4 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Rhodococcus erythropolis (strain PR4 / NBRC 100887) GN=gatA PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.673e-20
Identity = 62/181 (34.25%), Postives = 89/181 (49.17%), Query Frame = 2
Query:  230 EPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHK-VRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLP 769
            EP S L GV IA+KD    +  PTT  +K L   V P   DA    +LR  G  ++GKTN+ E   G+S  N  +G  RNP+D ++I                 P+A+G D GGS+R PAA+   VG KPT+G +   G++    ++   G    TV D  +++  I G  P    ++  P
Sbjct:   68 EPASALAGVPIALKDIFTTTDMPTTCASKILEGWVAPY--DATLTSKLRAAGIPILGKTNLDEFAMGSSTENSAFGPTRNPWDVTRIPGGSGGGSAAALASRQAPLAIGTDTGGSIRQPAAVTATVGTKPTYGTVSRFGLVACASSLDQGGPCGRTVLDTALLHEVIAGHDPRDSTSIDAP 246          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_PSESM (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Pseudomonas syringae pv. tomato GN=gatA PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.673e-20
Identity = 65/233 (27.90%), Postives = 110/233 (47.21%), Query Frame = 2
Query:  149 KMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSISAIKLGKYDAWFN 847
            +++ FI+  E+  + QA  +  R   GE   +L G  +A KD        T+ G++ L   +    DA  V +L   G + +GKTNM E   G++  + HYG  +NP++   +               L P A G D GGS+R PAAL  + G KPT+GR+   G++    ++   G +A T ED  ++   + G  P    ++  P   +    + TS+  +++G    +F+
Sbjct:   37 QLNSFISLTEDLAITQAQAADARRAAGENGPLL-GAPLAHKDLFCTQGIRTSCGSRMLDNFK-APYDATVVSKLASAGTVTLGKTNMDEFAMGSANESSHYGAVKNPWNLECVPGGSSGGSAAAVAARLLPAATGTDTGGSIRQPAALTNLTGLKPTYGRVSRWGMIAYASSLDQAGPMARTAEDCALLLQGMAGFDPQDSTSIDEPVPDYSASLN-TSLKGLRIGVPKEYFS 266          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_PSEPW (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Pseudomonas putida (strain W619) GN=gatA PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.673e-20
Identity = 74/261 (28.35%), Postives = 123/261 (47.13%), Query Frame = 2
Query:   62 KAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSISAIKLGKYDAWF 844
            K++SS ++T  ++A        +  +P  +++ FI+  EE  L QA  +  R   GE  ++L G  IA KD    +   T+ G+K L   +    DA  V +L   G + +GKTNM E   G++  + HYG  +NP++   +               L P   G D GGS+R PAAL  + G KPT+GR+   G++    ++   G LA T ED  ++   + G       ++  P   +    +A S+  +++G    +F
Sbjct:   16 KSFSSEELTGALLARI------QQLDP--QLNSFISVTEELALGQARAADARRAAGETGALL-GAPIAHKDLFCTNGVRTSCGSKMLDNFK-APYDATVVAKLAEAGMVTLGKTNMDEFAMGSANESSHYGAVKNPWNLEHVPGGSSGGSAAAVAARLLPATTGTDTGGSIRQPAALTNLTGLKPTYGRVSRWGMIAYASSLDQGGPLARTAEDCALLLQGMAGFDAKDSTSIDEPVPDYSANLNA-SLQGLRIGLPKEYF 265          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_NITEC (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Nitrosomonas eutropha (strain C91) GN=gatA PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.673e-20
Identity = 69/226 (30.53%), Postives = 107/226 (47.35%), Query Frame = 2
Query:   59 SKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHK-VRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            S   S   I+   +   F+  ++ + NP +    FI  +EE  L QA  +      G+  ++L G+ IA KD    + + TT G+K L   + P   DA  V +    G + +GKTNM E   G+S    +YG  +NP+D   +               L P A G D GGS+R PAALCG+ G KPT+G +   G++    ++   G +A + ED  ++   + G
Sbjct:   10 SSLLSEKKISSTELTGEFLARIK-ALNPDLNA--FITMDEEKSLDQARTADEMIATGQS-TLLTGIPIAQKDIFCANGWLTTCGSKMLSNFISPY--DATVVKQFDQVGMVNLGKTNMDEFAMGSSNETSYYGPVKNPWDRLAVPGGSSGGSACAVAARLAPAATGTDTGGSIRQPAALCGISGIKPTYGLVSRYGMIAFASSLDQAGPMARSAEDLALLLNVMVG 229          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: HYIN_AGRRH (Indoleacetamide hydrolase OS=Agrobacterium rhizogenes GN=aux2 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.104e-20
Identity = 62/169 (36.69%), Postives = 82/169 (48.52%), Query Frame = 2
Query:  245 LDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQ 751
            L GV +  K  I    +  T GT  L   +P T  A    +L   GA+     NMHEL  G +  N   G  RNP++PS I               L    +G D G SVR+PAALCGVVGF+PT GR P  G++P++ T    G++A  V D +++   I G  P  Q
Sbjct:   66 LAGVPLCFKANIATGRFAATAGTPGLQNHKPKT-PAGVARQLLAAGALPGASGNMHELSFGITSNNFATGAVRNPWNPSLIPGGSSGGVAAAVAGRLMLGGVGTDTGASVRLPAALCGVVGFRPTVGRYPTDGIVPVSPTRDTPGVIAQNVPDVILLDGIICGRPPVNQ 233          
The following BLAST results are available for this feature:
BLAST of FC878075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_ACIC53.578e-2032.99Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
AMID_RHOER3.578e-2034.76Amidase OS=Rhodococcus erythropolis GN=amdA PE=1 S... [more]
GATA_STAES4.673e-2028.63Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_STAEQ4.673e-2028.63Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_STACT4.673e-2029.78Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_RHOE44.673e-2034.25Glutamyl-tRNA(Gln) amidotransferase subunit A OS=R... [more]
GATA_PSESM4.673e-2027.90Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]
GATA_PSEPW4.673e-2028.35Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]
GATA_NITEC4.673e-2030.53Glutamyl-tRNA(Gln) amidotransferase subunit A OS=N... [more]
HYIN_AGRRH6.104e-2036.69Indoleacetamide hydrolase OS=Agrobacterium rhizoge... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA35BB11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA35BB11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878075 ID=FC878075; Name=FC878075; organism=Citrus clementina; type=EST; length=849bp
TCTGCCTCTGTCTTCAGAAAAGCAGCCGTTTTTCCATCGCTGGACTGTAT
TAGATTATTCAAAAGCCTACAGTTCCGGAGATATTACTCCTCGTATGGTA
GCAGAGCGGTTTATAACCGCAGTACGTGAGTCTTCAAACCCTCCAATGAA
AATGTCATTCTTCATTAACAACAATGAAGAAGATATTCTAAAGCAAGCTA
CAGAGTCGACTCTTCGGTATAAAAAAGGAGAGCCAATATCGGTTCTAGAT
GGAGTCCTAATTGCAGTCAAGGATGAAATTGATTGTTCTCCTTACCCAAC
TACAGGAGGCACCAAGTGGTTGCATAAAGTTAGACCTTGCACAGGTGATG
CATGCTGCGTTATGCGCCTCAGATTGTGCGGCGCCATACTTGTTGGGAAA
ACTAATATGCATGAGCTCGGGGCTGGAACAAGTGGGATAAATCCTCATTA
TGGGGTCGCTAGAAATCCATACGACCCCAGCAAAATCACTGGGGGTTCTT
CTAGTGGATCAGCAGCAGTGGTGGCTGCAGGATTGTGCCCTGTCGCCCTT
GGTGTTGATGGAGGAGGATCCGTGCGGATGCCTGCAGCTCTCTGTGGTGT
TGTTGGTTTTAAGCCAACTTTCGGGCGCATACCTCTTTCTGGTGTTCTTC
CACTGAACTGGACAGTAGGAATGGTTGGAATTTTAGCAGCCACTGTAGAA
GATGCATTGGTTGTTTATGCAGCTATTAATGGTCCACTTCCTTCCCAACA
GCCCACTGTTTCATTGCCAAAAGTATCGTTCCCACTGCTGAAGTCTGCAA
CATCAATATCAGCCATCAAATTGGGCAAGTATGATGCGTGGTTCAACGA
back to top