FC878075

Overview
NameFC878075
Unique NameFC878075
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length849
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_TREPS (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Treponema pallidum subsp. pallidum (strain SS14) GN=gatA PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.104e-20
Identity = 59/161 (36.65%), Postives = 80/161 (49.69%), Query Frame = 2
Query:  251 GVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            G+  AVKD I       T G+K L   R    DA  V RLR  GAI +G+TNM E   G+S     YG  RNP D S+ +                P ALG + GGSVR+PAA CG+ G KPT+G +   GV+    ++  +G  A  ++D  +  +  +G
Sbjct:   91 GLPFAVKDNISVKGKHCTCGSKLLADYR-APYDATVVARLRAAGAIPLGRTNMDEFAMGSSTEYSVYGPTRNPRDRSRTSGGSSGGSAAAVAGGQAPFALGTETGGSVRLPAAYCGLYGLKPTYGLLSRYGVVAFGSSLDQIGFFATCIDDIALALSVTSG 250          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_TREPA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Treponema pallidum GN=gatA PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.104e-20
Identity = 59/161 (36.65%), Postives = 80/161 (49.69%), Query Frame = 2
Query:  251 GVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            G+  AVKD I       T G+K L   R    DA  V RLR  GAI +G+TNM E   G+S     YG  RNP D S+ +                P ALG + GGSVR+PAA CG+ G KPT+G +   GV+    ++  +G  A  ++D  +  +  +G
Sbjct:   91 GLPFAVKDNISVKGKHCTCGSKLLADYR-APYDATVVARLRAAGAIPLGRTNMDEFAMGSSTEYSVYGPTRNPRDRSRTSGGSSGGSAAAVAGGQAPFALGTETGGSVRLPAAYCGLYGLKPTYGLLSRYGVVAFGSSLDQIGFFATCIDDIALALSVTSG 250          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_PSEPK (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Pseudomonas putida (strain KT2440) GN=gatA PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.104e-20
Identity = 74/261 (28.35%), Postives = 122/261 (46.74%), Query Frame = 2
Query:   62 KAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSISAIKLGKYDAWF 844
            K++SS ++T  ++A       R     P +++ FI+  E+  L QA  +  R   GE  ++L G  IA KD    +   T+ G+K L   +    DA  V +L   G + +GKTNM E   G++  + HYG  +NP++   +               L P   G D GGS+R PAAL  + G KPT+GR+   G++    ++   G LA T ED  ++   + G       ++  P   +    +A S+  +++G    +F
Sbjct:   16 KSFSSEELTGALLA-------RIKQLDP-QINSFISVTEDLALGQARAADARRAAGETSALL-GAPIAHKDLFCTNGVRTSCGSKMLDNFK-APYDATVVAKLAEAGMVTLGKTNMDEFAMGSANESSHYGAVKNPWNLEHVPGGSSGGSAAAVAARLLPATTGTDTGGSIRQPAALTNLTGLKPTYGRVSRWGMIAYASSLDQGGPLARTAEDCALLLQGMAGFDAKDSTSIEEPVPDYSASLNA-SLQGLRIGLPKEYF 265          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_STRGC (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288) GN=gatA PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.971e-20
Identity = 63/194 (32.47%), Postives = 99/194 (51.03%), Query Frame = 2
Query:  161 FINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLP 742
            FI  +EE+ L +A  + L  K  +  +++ G+ +AVKD I      TT  +K L+  +P   DA  V +L     I+VGKTNM E   G S  N ++   +N +D SK+                  ++LG D GGS+R PA+  GVVG KPT+GR+   G++    ++  +G  + TV++   +   I+G  P
Sbjct:   43 FITVSEEEALAKA--AALDAKGIDADNLMSGIPLAVKDNISTKGILTTAASKMLYNYKPIF-DATSVEKLYGKDMIIVGKTNMDEFAMGGSSENSYFKTTKNAWDGSKVPGGSSGGSATAVASGQVRLSLGSDTGGSIRQPASFNGVVGLKPTYGRVSRFGLIAFGSSLDQIGPFSQTVKENAQLLNVISGNDP 233          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_RALME (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=gatA PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.971e-20
Identity = 63/204 (30.88%), Postives = 98/204 (48.04%), Query Frame = 2
Query:  152 MSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVS 763
            ++ F+  + E  L QA  +  R  +G+  + L GV IA KD      + +T G+K L        DA  V RL   G + +GKTNM E   G+S  N  +G   NP+D S++               L P A G D GGS+R PA+  G+ G KPT+GR+   G++    ++   G +A + ED  ++   + G  P    +++
Sbjct:   42 LNAFVAVDPELTLAQARAADERRAQGQA-TPLTGVPIAHKDVFVTRGWKSTAGSKMLANYES-PFDATVVERLAAAGMVTLGKTNMDEFAMGSSNENSFFGPVSNPWDTSRVPGGSSGGSAAAVAAGLAPAATGTDTGGSIRQPASFSGITGIKPTYGRVSRYGMIAFASSLDQGGPMAHSAEDCALLLNGMAGFDPKDSTSLT 243          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_PSEPG (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Pseudomonas putida (strain GB-1) GN=gatA PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.971e-20
Identity = 69/270 (25.56%), Postives = 124/270 (45.93%), Query Frame = 2
Query:   35 HRWTVLDYSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSISAIKLGKYDAWF 844
            H++T+ + ++  +    +   +    +  +++      +++ FI+  E+  L QA  +  R   GE  ++L G  IA KD    +   T+ G+K L   +    DA  V +L   G + +GKTNM E   G++  + HYG  +NP++   +               L P   G D GGS+R PAAL  + G KPT+GR+   G++    ++   G LA T ED  ++   + G       ++  P   +    +A S+  +++G    +F
Sbjct:    2 HQFTLAEIARGLADKSFSSEELTRALLARIKQLDP---QINSFISVTEDLALGQARAADARRAAGETGALL-GAPIAHKDLFCTNGVRTSCGSKMLDNFK-APYDATVVAKLAEAGMVTLGKTNMDEFAMGSANESSHYGAVKNPWNLEHVPGGSSGGSAAAVAARLLPATTGTDTGGSIRQPAALTNLTGLKPTYGRVSRWGMIAYASSLDQGGPLARTAEDCALLLQGMAGFDAKDSTSIEEPVPDYSANLNA-SLQGLRIGLPKEYF 265          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_PSEPF (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Pseudomonas fluorescens (strain Pf0-1) GN=gatA PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.971e-20
Identity = 71/236 (30.08%), Postives = 110/236 (46.61%), Query Frame = 2
Query:   62 KAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLP 769
            K +SS ++T  ++A   IT +    N       FI+  EE  L+QA  + +R   GE  ++L G  IA KD        T+ G+K L   +    DA  V +L   G + +GKTNM E   G++  +  YG  +NP++   +               L P A   D GGS+R PAA   + G KPT+GR+   G++    ++   G LA T ED  ++   + G  P+   ++  P
Sbjct:   16 KKFSSEELTKVLLAR--ITQLDPQLNS------FISLTEELALEQAKAADVRRANGESGALL-GAPIAHKDLFCTQGIRTSCGSKMLDNFK-APYDATVVSKLAAAGTVTLGKTNMDEFAMGSANESSWYGAVKNPWNLEHVPGGSSGGSAAAVAARLLPAATATDTGGSIRQPAAFTNLTGLKPTYGRVSRWGMIAYASSLDQGGPLARTAEDCAILLQGMAGFDPNDSTSIDEP 241          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_PROMP (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=gatA PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.971e-20
Identity = 76/270 (28.15%), Postives = 123/270 (45.56%), Query Frame = 2
Query:   56 YSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFI-----NNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHK-VRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSISAIKLGKYDAWFN 847
            + K   SG+ + + +   F   + +S NP +     +     N+  E+I K  T +       + +  L G+ IA+KD I      T+  +K L   V P    A    +L   G I +GKTN+ E   G+S     +G   NP+D +++               LC  A+G D GGS+R PA+ CGVVG KPT+GR+   G++    ++  +G +  TV DA  +  +I+G        +  P  ++ L     SI  IK+G  +  F+
Sbjct:    6 FRKEIYSGNASVKELVNEFFLKI-DSLNPKINAYTCLTKKIANSQSENIDKLITNN-------QKLPSLAGIPIAIKDNICTKGVVTSCSSKMLKDFVSPYESSASG--KLWSLGGICLGKTNLDEFAMGSSTETSVFGTTSNPWDVNRVPGGSSGGSAASVAAGLCLAAIGSDTGGSIRQPASFCGVVGLKPTYGRVSRWGLIAFASSLDQIGPITNTVSDAAEILYSISGKDNLDSTCLDKPVPNY-LSDLDKSIKGIKIGIIEECFD 264          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_NOCFA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Nocardia farcinica GN=gatA PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.971e-20
Identity = 73/231 (31.60%), Postives = 109/231 (47.19%), Query Frame = 2
Query:  149 KMSFFINNNEEDILKQATESTLRYKKGE-PISVLDGVLIAVKDEIDCSPYPTTGGTKWLHK-VRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING--PLPSQQPTVSLPKVSFPLLKSAT-SISAIKLG 826
            +++ F++   E  L+ A         GE P S L GV +A+KD    +  PTT  +K L   + P   DA    +LR  G  ++GKTNM E   G+S  N  YG  RNP+D ++I                 P+A+G D GGS+R PAA+   VG KPT+G +   G++    ++   G    TV D  +++  I G  P  S    V +P V     + A   +  +K+G
Sbjct:   40 ELNAFLHVAGERALEAAAAVDAALAAGEAPASPLAGVPLALKDVFTTTDMPTTCASKILEGWMSPY--DATVTTKLRAAGIPILGKTNMDEFAMGSSTENSAYGPTRNPWDTTRIPGGSGGGSAAALASRQAPLAIGTDTGGSIRQPAAVTATVGTKPTYGTVSRYGLVACASSLDQGGPCGRTVLDTALLHEVIAGYDPRDSTSRDVPVPPVVEAARRGAAGDLRGVKVG 268          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_MYCUA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Mycobacterium ulcerans (strain Agy99) GN=gatA PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.971e-20
Identity = 65/192 (33.85%), Postives = 92/192 (47.92%), Query Frame = 2
Query:  161 FINNNEEDILKQATESTLRYKKGEPI-SVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            F++    + L  A         GE + S L GV +A+KD       PTT G+K L   R    DA   +RLR  G  ++GKTNM E   G+S  N  YG  RNP++  ++                 P+A+G D GGS+R PAAL   VG KPT+G +   G++    ++   G  A TV D  +++  I G
Sbjct:   44 FLHIGAHEALSAAAAVDTALAAGERLPSALAGVPLALKDVFTTVDMPTTCGSKILEGWRS-PYDATLTLRLRAAGIPILGKTNMDEFAMGSSTENSAYGPTRNPWNLDRVPGGSGGGSAAALAAYQAPLAIGSDTGGSIRQPAALTATVGVKPTYGTVSRYGLVACASSLDQGGPCARTVLDTAMLHQVIAG 234          
The following BLAST results are available for this feature:
BLAST of FC878075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_TREPS6.104e-2036.65Glutamyl-tRNA(Gln) amidotransferase subunit A OS=T... [more]
GATA_TREPA6.104e-2036.65Glutamyl-tRNA(Gln) amidotransferase subunit A OS=T... [more]
GATA_PSEPK6.104e-2028.35Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]
GATA_STRGC7.971e-2032.47Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_RALME7.971e-2030.88Glutamyl-tRNA(Gln) amidotransferase subunit A OS=R... [more]
GATA_PSEPG7.971e-2025.56Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]
GATA_PSEPF7.971e-2030.08Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]
GATA_PROMP7.971e-2028.15Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]
GATA_NOCFA7.971e-2031.60Glutamyl-tRNA(Gln) amidotransferase subunit A OS=N... [more]
GATA_MYCUA7.971e-2033.85Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA35BB11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA35BB11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878075 ID=FC878075; Name=FC878075; organism=Citrus clementina; type=EST; length=849bp
TCTGCCTCTGTCTTCAGAAAAGCAGCCGTTTTTCCATCGCTGGACTGTAT
TAGATTATTCAAAAGCCTACAGTTCCGGAGATATTACTCCTCGTATGGTA
GCAGAGCGGTTTATAACCGCAGTACGTGAGTCTTCAAACCCTCCAATGAA
AATGTCATTCTTCATTAACAACAATGAAGAAGATATTCTAAAGCAAGCTA
CAGAGTCGACTCTTCGGTATAAAAAAGGAGAGCCAATATCGGTTCTAGAT
GGAGTCCTAATTGCAGTCAAGGATGAAATTGATTGTTCTCCTTACCCAAC
TACAGGAGGCACCAAGTGGTTGCATAAAGTTAGACCTTGCACAGGTGATG
CATGCTGCGTTATGCGCCTCAGATTGTGCGGCGCCATACTTGTTGGGAAA
ACTAATATGCATGAGCTCGGGGCTGGAACAAGTGGGATAAATCCTCATTA
TGGGGTCGCTAGAAATCCATACGACCCCAGCAAAATCACTGGGGGTTCTT
CTAGTGGATCAGCAGCAGTGGTGGCTGCAGGATTGTGCCCTGTCGCCCTT
GGTGTTGATGGAGGAGGATCCGTGCGGATGCCTGCAGCTCTCTGTGGTGT
TGTTGGTTTTAAGCCAACTTTCGGGCGCATACCTCTTTCTGGTGTTCTTC
CACTGAACTGGACAGTAGGAATGGTTGGAATTTTAGCAGCCACTGTAGAA
GATGCATTGGTTGTTTATGCAGCTATTAATGGTCCACTTCCTTCCCAACA
GCCCACTGTTTCATTGCCAAAAGTATCGTTCCCACTGCTGAAGTCTGCAA
CATCAATATCAGCCATCAAATTGGGCAAGTATGATGCGTGGTTCAACGA
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