FC878075
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_TREPS (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Treponema pallidum subsp. pallidum (strain SS14) GN=gatA PE=3 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 6.104e-20 Identity = 59/161 (36.65%), Postives = 80/161 (49.69%), Query Frame = 2 Query: 251 GVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733 G+ AVKD I T G+K L R DA V RLR GAI +G+TNM E G+S YG RNP D S+ + P ALG + GGSVR+PAA CG+ G KPT+G + GV+ ++ +G A ++D + + +G Sbjct: 91 GLPFAVKDNISVKGKHCTCGSKLLADYR-APYDATVVARLRAAGAIPLGRTNMDEFAMGSSTEYSVYGPTRNPRDRSRTSGGSSGGSAAAVAGGQAPFALGTETGGSVRLPAAYCGLYGLKPTYGLLSRYGVVAFGSSLDQIGFFATCIDDIALALSVTSG 250
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_TREPA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Treponema pallidum GN=gatA PE=3 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 6.104e-20 Identity = 59/161 (36.65%), Postives = 80/161 (49.69%), Query Frame = 2 Query: 251 GVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733 G+ AVKD I T G+K L R DA V RLR GAI +G+TNM E G+S YG RNP D S+ + P ALG + GGSVR+PAA CG+ G KPT+G + GV+ ++ +G A ++D + + +G Sbjct: 91 GLPFAVKDNISVKGKHCTCGSKLLADYR-APYDATVVARLRAAGAIPLGRTNMDEFAMGSSTEYSVYGPTRNPRDRSRTSGGSSGGSAAAVAGGQAPFALGTETGGSVRLPAAYCGLYGLKPTYGLLSRYGVVAFGSSLDQIGFFATCIDDIALALSVTSG 250
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_PSEPK (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Pseudomonas putida (strain KT2440) GN=gatA PE=3 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 6.104e-20 Identity = 74/261 (28.35%), Postives = 122/261 (46.74%), Query Frame = 2 Query: 62 KAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSISAIKLGKYDAWF 844 K++SS ++T ++A R P +++ FI+ E+ L QA + R GE ++L G IA KD + T+ G+K L + DA V +L G + +GKTNM E G++ + HYG +NP++ + L P G D GGS+R PAAL + G KPT+GR+ G++ ++ G LA T ED ++ + G ++ P + +A S+ +++G +F Sbjct: 16 KSFSSEELTGALLA-------RIKQLDP-QINSFISVTEDLALGQARAADARRAAGETSALL-GAPIAHKDLFCTNGVRTSCGSKMLDNFK-APYDATVVAKLAEAGMVTLGKTNMDEFAMGSANESSHYGAVKNPWNLEHVPGGSSGGSAAAVAARLLPATTGTDTGGSIRQPAALTNLTGLKPTYGRVSRWGMIAYASSLDQGGPLARTAEDCALLLQGMAGFDAKDSTSIEEPVPDYSASLNA-SLQGLRIGLPKEYF 265
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_STRGC (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288) GN=gatA PE=3 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 7.971e-20 Identity = 63/194 (32.47%), Postives = 99/194 (51.03%), Query Frame = 2 Query: 161 FINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLP 742 FI +EE+ L +A + L K + +++ G+ +AVKD I TT +K L+ +P DA V +L I+VGKTNM E G S N ++ +N +D SK+ ++LG D GGS+R PA+ GVVG KPT+GR+ G++ ++ +G + TV++ + I+G P Sbjct: 43 FITVSEEEALAKA--AALDAKGIDADNLMSGIPLAVKDNISTKGILTTAASKMLYNYKPIF-DATSVEKLYGKDMIIVGKTNMDEFAMGGSSENSYFKTTKNAWDGSKVPGGSSGGSATAVASGQVRLSLGSDTGGSIRQPASFNGVVGLKPTYGRVSRFGLIAFGSSLDQIGPFSQTVKENAQLLNVISGNDP 233
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_RALME (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=gatA PE=3 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 7.971e-20 Identity = 63/204 (30.88%), Postives = 98/204 (48.04%), Query Frame = 2 Query: 152 MSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVS 763 ++ F+ + E L QA + R +G+ + L GV IA KD + +T G+K L DA V RL G + +GKTNM E G+S N +G NP+D S++ L P A G D GGS+R PA+ G+ G KPT+GR+ G++ ++ G +A + ED ++ + G P +++ Sbjct: 42 LNAFVAVDPELTLAQARAADERRAQGQA-TPLTGVPIAHKDVFVTRGWKSTAGSKMLANYES-PFDATVVERLAAAGMVTLGKTNMDEFAMGSSNENSFFGPVSNPWDTSRVPGGSSGGSAAAVAAGLAPAATGTDTGGSIRQPASFSGITGIKPTYGRVSRYGMIAFASSLDQGGPMAHSAEDCALLLNGMAGFDPKDSTSLT 243
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_PSEPG (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Pseudomonas putida (strain GB-1) GN=gatA PE=3 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 7.971e-20 Identity = 69/270 (25.56%), Postives = 124/270 (45.93%), Query Frame = 2 Query: 35 HRWTVLDYSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSISAIKLGKYDAWF 844 H++T+ + ++ + + + + +++ +++ FI+ E+ L QA + R GE ++L G IA KD + T+ G+K L + DA V +L G + +GKTNM E G++ + HYG +NP++ + L P G D GGS+R PAAL + G KPT+GR+ G++ ++ G LA T ED ++ + G ++ P + +A S+ +++G +F Sbjct: 2 HQFTLAEIARGLADKSFSSEELTRALLARIKQLDP---QINSFISVTEDLALGQARAADARRAAGETGALL-GAPIAHKDLFCTNGVRTSCGSKMLDNFK-APYDATVVAKLAEAGMVTLGKTNMDEFAMGSANESSHYGAVKNPWNLEHVPGGSSGGSAAAVAARLLPATTGTDTGGSIRQPAALTNLTGLKPTYGRVSRWGMIAYASSLDQGGPLARTAEDCALLLQGMAGFDAKDSTSIEEPVPDYSANLNA-SLQGLRIGLPKEYF 265
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_PSEPF (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Pseudomonas fluorescens (strain Pf0-1) GN=gatA PE=3 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 7.971e-20 Identity = 71/236 (30.08%), Postives = 110/236 (46.61%), Query Frame = 2 Query: 62 KAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLP 769 K +SS ++T ++A IT + N FI+ EE L+QA + +R GE ++L G IA KD T+ G+K L + DA V +L G + +GKTNM E G++ + YG +NP++ + L P A D GGS+R PAA + G KPT+GR+ G++ ++ G LA T ED ++ + G P+ ++ P Sbjct: 16 KKFSSEELTKVLLAR--ITQLDPQLNS------FISLTEELALEQAKAADVRRANGESGALL-GAPIAHKDLFCTQGIRTSCGSKMLDNFK-APYDATVVSKLAAAGTVTLGKTNMDEFAMGSANESSWYGAVKNPWNLEHVPGGSSGGSAAAVAARLLPAATATDTGGSIRQPAAFTNLTGLKPTYGRVSRWGMIAYASSLDQGGPLARTAEDCAILLQGMAGFDPNDSTSIDEP 241
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_PROMP (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=gatA PE=3 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 7.971e-20 Identity = 76/270 (28.15%), Postives = 123/270 (45.56%), Query Frame = 2 Query: 56 YSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFI-----NNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHK-VRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSISAIKLGKYDAWFN 847 + K SG+ + + + F + +S NP + + N+ E+I K T + + + L G+ IA+KD I T+ +K L V P A +L G I +GKTN+ E G+S +G NP+D +++ LC A+G D GGS+R PA+ CGVVG KPT+GR+ G++ ++ +G + TV DA + +I+G + P ++ L SI IK+G + F+ Sbjct: 6 FRKEIYSGNASVKELVNEFFLKI-DSLNPKINAYTCLTKKIANSQSENIDKLITNN-------QKLPSLAGIPIAIKDNICTKGVVTSCSSKMLKDFVSPYESSASG--KLWSLGGICLGKTNLDEFAMGSSTETSVFGTTSNPWDVNRVPGGSSGGSAASVAAGLCLAAIGSDTGGSIRQPASFCGVVGLKPTYGRVSRWGLIAFASSLDQIGPITNTVSDAAEILYSISGKDNLDSTCLDKPVPNY-LSDLDKSIKGIKIGIIEECFD 264
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_NOCFA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Nocardia farcinica GN=gatA PE=3 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 7.971e-20 Identity = 73/231 (31.60%), Postives = 109/231 (47.19%), Query Frame = 2 Query: 149 KMSFFINNNEEDILKQATESTLRYKKGE-PISVLDGVLIAVKDEIDCSPYPTTGGTKWLHK-VRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING--PLPSQQPTVSLPKVSFPLLKSAT-SISAIKLG 826 +++ F++ E L+ A GE P S L GV +A+KD + PTT +K L + P DA +LR G ++GKTNM E G+S N YG RNP+D ++I P+A+G D GGS+R PAA+ VG KPT+G + G++ ++ G TV D +++ I G P S V +P V + A + +K+G Sbjct: 40 ELNAFLHVAGERALEAAAAVDAALAAGEAPASPLAGVPLALKDVFTTTDMPTTCASKILEGWMSPY--DATVTTKLRAAGIPILGKTNMDEFAMGSSTENSAYGPTRNPWDTTRIPGGSGGGSAAALASRQAPLAIGTDTGGSIRQPAAVTATVGTKPTYGTVSRYGLVACASSLDQGGPCGRTVLDTALLHEVIAGYDPRDSTSRDVPVPPVVEAARRGAAGDLRGVKVG 268
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_MYCUA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Mycobacterium ulcerans (strain Agy99) GN=gatA PE=3 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 7.971e-20 Identity = 65/192 (33.85%), Postives = 92/192 (47.92%), Query Frame = 2 Query: 161 FINNNEEDILKQATESTLRYKKGEPI-SVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733 F++ + L A GE + S L GV +A+KD PTT G+K L R DA +RLR G ++GKTNM E G+S N YG RNP++ ++ P+A+G D GGS+R PAAL VG KPT+G + G++ ++ G A TV D +++ I G Sbjct: 44 FLHIGAHEALSAAAAVDTALAAGERLPSALAGVPLALKDVFTTVDMPTTCGSKILEGWRS-PYDATLTLRLRAAGIPILGKTNMDEFAMGSSTENSAYGPTRNPWNLDRVPGGSGGGSAAALAAYQAPLAIGSDTGGSIRQPAALTATVGVKPTYGTVSRYGLVACASSLDQGGPCARTVLDTAMLHQVIAG 234 The following BLAST results are available for this feature:
BLAST of FC878075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC878075 ID=FC878075; Name=FC878075; organism=Citrus clementina; type=EST; length=849bpback to top |