FC878075

Overview
NameFC878075
Unique NameFC878075
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length849
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_MYCMM (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=gatA PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.971e-20
Identity = 65/192 (33.85%), Postives = 92/192 (47.92%), Query Frame = 2
Query:  161 FINNNEEDILKQATESTLRYKKGEPI-SVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            F++    + L  A         GE + S L GV +A+KD       PTT G+K L   R    DA   +RLR  G  ++GKTNM E   G+S  N  YG  RNP++  ++                 P+A+G D GGS+R PAAL   VG KPT+G +   G++    ++   G  A TV D  +++  I G
Sbjct:   44 FLHIGAHEALSAAAAVDTALAAGERLPSALAGVPLALKDVFTTVDMPTTCGSKILEGWRS-PYDATLTLRLRAAGIPILGKTNMDEFAMGSSTENSAYGPTRNPWNLDRVPGGSGGGSAAALAAYQAPLAIGSDTGGSIRQPAALTATVGVKPTYGTVSRYGLVACASSLDQGGPCARTVLDTAMLHQVIAG 234          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_AZOVD (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=gatA PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.971e-20
Identity = 72/246 (29.27%), Postives = 113/246 (45.93%), Query Frame = 2
Query:   35 HRWTVLDYSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHK-VRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLP 769
            HR T+   ++  ++ + +   ++E  +  + E       ++ FI    E  L+QA  +  R   GE  ++L G  IA KD        T+  +K L   + P   DA  V RL   G + +GK NM E   G++  + HYG  RNP++   +               L P A G D GGS+R PAAL  + G KPT+GR+   G++    ++   G LA + ED  ++ +A+ G  P     V  P
Sbjct:    2 HRLTLAQIARGLAAKEFSSVELSEALLARIAELDPG---LNSFITVTAEQALEQARAADARRAAGESGALL-GAPIAHKDLFCTKGVRTSCASKILDDFIAPY--DATVVERLAAAGCVSLGKLNMDEFAMGSASESSHYGPVRNPWNTECVPGGSSGGSAAAVAARLVPAATGSDTGGSIRQPAALTNLTGLKPTYGRVSRWGMIAYASSLDQGGPLARSAEDCALLLSAMAGFDPKDSTCVDQP 241          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_SYNPX (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Synechococcus sp. (strain WH8102) GN=gatA PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.041e-19
Identity = 74/263 (28.14%), Postives = 118/263 (44.87%), Query Frame = 2
Query:   44 TVLDYSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING--PLPSQQPTVSLPKVSFPLLKSATSISAIKLG 826
            T+  + +   +G ++ R + +  +  + E S P   ++ F+    E     A         GE +  L G+ +A+KD +      TT  ++ L +  P   ++    RL   GA+LVGKTN+ E   G S     +G  +NP++   +                C  +LG D GGS+R PA+ CGVVG KPT+GR+   G++    ++  VG  A  V DA  +   I G     S   T  +P  S  L   A SI  +++G
Sbjct:    2 TISAWRQRLQAGGVSSRELVDEHLQRL-EQSEP--SLNAFVEVTAERARADADRVDQARAAGEDLGPLAGLPLAIKDNLCTRGVRTTCSSRMLEQFVP-PYESTVTDRLWGAGAVLVGKTNLDEFAMGGSTETSAFGATKNPWNIEHVPGGSSGGSAAAVASGSCLASLGSDTGGSIRQPASFCGVVGLKPTYGRVSRWGLVAFASSLDQVGPFAGCVADAAELLQVIAGHDQRDSTCLTADVPNYSAGL---AASIKGLRVG 257          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_PSEP1 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=gatA PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.041e-19
Identity = 74/261 (28.35%), Postives = 121/261 (46.36%), Query Frame = 2
Query:   62 KAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSISAIKLGKYDAWF 844
            K++SS ++T  ++A       R     P +++ FI+  ++  L QA  +  R   GE   VL G  IA KD    +   T+ G+K L   +    DA  V +L   G + +GKTNM E   G++  + HYG  +NP++   +               L P   G D GGS+R PAAL  + G KPT+GR+   G++    ++   G LA T ED  ++   + G       ++  P   +    +A S+  +++G    +F
Sbjct:   16 KSFSSEELTGALLA-------RIKQLDP-QINSFISITDDLALAQARAADARRAAGET-GVLLGAPIAHKDLFCTNGVRTSCGSKMLDNFK-APYDATVVAKLAEAGMVTLGKTNMDEFAMGSANESSHYGAVKNPWNLEHVPGGSSGGSAAAVAARLLPATTGTDTGGSIRQPAALTNLTGLKPTYGRVSRWGMIAYASSLDQGGPLARTAEDCALLLQGMAGFDAKDSTSIEEPVPDYSASLNA-SLQGLRIGLPKEYF 265          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_NEIMB (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Neisseria meningitidis serogroup B GN=gatA PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.041e-19
Identity = 70/249 (28.11%), Postives = 117/249 (46.99%), Query Frame = 2
Query:   38 RWTVLDYSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHK-VRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSF 781
            ++T+   S    S  I+   +A  ++ A+ E  NP +  + +I  +++  L +A  +  R  +G   S L GV +A KD    + + +   +K L   + P T  A  V  L   G + +G+TNM E   G++  N  YG A+NP++   +               L P ALG D GGS+R PA+ CG+ G KPT+G +   G++    +    G +A T ED  ++  A+ G  P    ++   K  +
Sbjct:    3 QYTLKQASVLLQSKQISAVELASAYLAAIAEK-NPAL--NGYITIDQDKTLAEARAADERIAQGNA-SALTGVPVAYKDIFCQTGWRSACASKMLDNFISPYT--ATVVQNLLDEGMVTLGRTNMDEFAMGSTNENSFYGAAKNPWNLEHVPGGSSGGSAAVVAARLAPAALGSDTGGSIRQPASHCGITGIKPTYGTVSRFGMVAYASSFDQTGPMAQTAEDCAILLNAMAGFDPKDSTSLEREKEDY 245          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_LACBA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Lactobacillus brevis (strain ATCC 367 / JCM 1170) GN=gatA PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.041e-19
Identity = 75/266 (28.20%), Postives = 122/266 (45.86%), Query Frame = 2
Query:   50 LDYSK---AYSSGDITPRMVAERFITAVRESS--NPPMKMSFFINNNEEDILKQATESTLR-YKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPL-LKSATSISAIKLG 826
            +DY K   A    D+  + ++ R +T     +      ++  F+  NE+  LKQAT+   +     +P++   G+ +A+KD I      TT  +K L    P   DA    +L     I VGKTN+ E   G S  N  +   +N +D +K+                   ALG D GGS+R PAA  G+VG KPT+GR+   G++    ++  +G +  +V+D   + +AI G       + + P   F   L  ATS+  +++G
Sbjct:    1 MDYFKTDLASLHADLVAKKISARELTQATFDNIKTTDAQVDAFLTLNEDAALKQATKIDEQGVATDQPLA---GIPVALKDNIVTKGLKTTAASKMLANFNPVY-DATVTEKLAQAQMITVGKTNLDEFAMGGSTENSAFKTTKNAWDYTKVPGGSSGGSAAAVASGQVLAALGSDTGGSIRQPAAFNGIVGLKPTYGRVSRWGLIAFGSSLDQIGPMTRSVKDNATMLSAIAGHDEHDLTSSTQPVPDFAADLTDATSVKGMRIG 262          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_GEOSL (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Geobacter sulfurreducens GN=gatA PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.041e-19
Identity = 63/207 (30.43%), Postives = 99/207 (47.83%), Query Frame = 2
Query:  149 KMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLP 769
            +++ +I    ++ L  A  +  R   G  ++ L GV +A+KD        TT G+K L    P   D   V +LR  GA++VGK N  E   G+SG +  +G  +NP++ + I                    LG D GGS+R PA+ CG VG +PT+GR+   GV+    ++  VG +   V D  ++  A+ G  P    ++ LP
Sbjct:   39 RVNAYITVTPDEALAAAEAADRRIAAGG-LTPLTGVPVALKDIFVTRGIRTTCGSKILGNFIP-PYDGTVVAKLREAGAVIVGKLNQDEFAMGSSGESSAFGATKNPWNLACIPGGSSSGSAAAIAARSATATLGTDTGGSIRQPASHCGCVGLRPTYGRVSRYGVIAYASSLDQVGPVTRDVTDCALMLGAVAGHDPLDSTSIDLP 243          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_EXISA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN=gatA PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.041e-19
Identity = 69/212 (32.55%), Postives = 98/212 (46.23%), Query Frame = 2
Query:  179 EDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING--PLPSQQPTVSLPKVSFPLLKSATSI 808
            ED  +QA       K  +  + L G+ I VKD I      TT  + +L    P   DA  V RL   GA+ +GK NM E   G+S  N  +   RNP+DP+++                   +LG D GGS+R PAA CGVVG KPT+G +   G++    ++  +G L  TVED   +   I G   + S    V +P  +  L +  T +
Sbjct:   48 EDAFEQAKRMDELAKMSD--NPLFGMPIGVKDNIVTKGMRTTCASTFLENFVPAH-DATVVERLHDAGALTIGKLNMDEFAMGSSNENSAFKPVRNPWDPTRVPGGSSGGSAASVAAGQVLFSLGSDTGGSIRQPAAYCGVVGMKPTYGLVSRFGLVAFASSLDQIGPLTRTVEDNAYLLNTIAGHCDMDSTSAEVEVPDYTAALNQDLTGM 256          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_BACSU (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Bacillus subtilis GN=gatA PE=3 SV=3)

HSP 1 Score: 97.4413 bits (241), Expect = 1.041e-19
Identity = 67/209 (32.06%), Postives = 97/209 (46.41%), Query Frame = 2
Query:  149 KMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING--PLPSQQPTVSLP 769
            K+  F+  +EE     A E            +L G+ I VKD I      TT  +K L    P   DA  V RL+   A+ +GK NM E   G+S  N  Y + +NP++   +                 P +LG D GGS+R PA+ CGVVG KPT+GR+   G++    ++  +G +  TVED   +  AI+G   + S    V +P
Sbjct:   39 KVQAFLALDEERARAYAKELDEAVDGRSEHGLLFGMPIGVKDNIVTKGLRTTCSSKILENFDPIY-DATVVQRLQDAEAVTIGKLNMDEFAMGSSTENSAYKLTKNPWNLDTVPGGSSGGSAAAVAAGEVPFSLGSDTGGSIRQPASFCGVVGLKPTYGRVSRYGLVAFASSLDQIGPITRTVEDNAFLLQAISGVDKMDSTSANVDVP 246          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: AMI4_MYCTU (Putative amidase amiD OS=Mycobacterium tuberculosis GN=amiD PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.041e-19
Identity = 68/202 (33.66%), Postives = 92/202 (45.54%), Query Frame = 2
Query:  128 ESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            E  +P +K   F+    E  L  A  +     +G    VL GV I VKD       PT  GT      RP   DA  V RLR  GA+++GK  M E      G +P      NP+DP+                 LC  ++G D GGS+R P ++CGV G KPT+GR+   GV+ L  +   VG +  +  DA V+ + I G
Sbjct:   48 ERLDPQLKSYAFVM--PETALAAARAADADIARGHYEGVLHGVPIGVKDLCYTVDAPTAAGTTIFRDFRPAY-DATVVARLRAAGAVIIGKLAMTE--GAYLGYHPSLPTPVNPWDPTAWAGVSSSGCGVATAAGLCFGSIGSDTGGSIRFPTSMCGVTGIKPTWGRVSRHGVVELAASYDHVGPITRSAHDAAVLLSVIAG 244          
The following BLAST results are available for this feature:
BLAST of FC878075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_MYCMM7.971e-2033.85Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_AZOVD7.971e-2029.27Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_SYNPX1.041e-1928.14Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_PSEP11.041e-1928.35Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]
GATA_NEIMB1.041e-1928.11Glutamyl-tRNA(Gln) amidotransferase subunit A OS=N... [more]
GATA_LACBA1.041e-1928.20Glutamyl-tRNA(Gln) amidotransferase subunit A OS=L... [more]
GATA_GEOSL1.041e-1930.43Glutamyl-tRNA(Gln) amidotransferase subunit A OS=G... [more]
GATA_EXISA1.041e-1932.55Glutamyl-tRNA(Gln) amidotransferase subunit A OS=E... [more]
GATA_BACSU1.041e-1932.06Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
AMI4_MYCTU1.041e-1933.66Putative amidase amiD OS=Mycobacterium tuberculosi... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA35BB11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA35BB11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878075 ID=FC878075; Name=FC878075; organism=Citrus clementina; type=EST; length=849bp
TCTGCCTCTGTCTTCAGAAAAGCAGCCGTTTTTCCATCGCTGGACTGTAT
TAGATTATTCAAAAGCCTACAGTTCCGGAGATATTACTCCTCGTATGGTA
GCAGAGCGGTTTATAACCGCAGTACGTGAGTCTTCAAACCCTCCAATGAA
AATGTCATTCTTCATTAACAACAATGAAGAAGATATTCTAAAGCAAGCTA
CAGAGTCGACTCTTCGGTATAAAAAAGGAGAGCCAATATCGGTTCTAGAT
GGAGTCCTAATTGCAGTCAAGGATGAAATTGATTGTTCTCCTTACCCAAC
TACAGGAGGCACCAAGTGGTTGCATAAAGTTAGACCTTGCACAGGTGATG
CATGCTGCGTTATGCGCCTCAGATTGTGCGGCGCCATACTTGTTGGGAAA
ACTAATATGCATGAGCTCGGGGCTGGAACAAGTGGGATAAATCCTCATTA
TGGGGTCGCTAGAAATCCATACGACCCCAGCAAAATCACTGGGGGTTCTT
CTAGTGGATCAGCAGCAGTGGTGGCTGCAGGATTGTGCCCTGTCGCCCTT
GGTGTTGATGGAGGAGGATCCGTGCGGATGCCTGCAGCTCTCTGTGGTGT
TGTTGGTTTTAAGCCAACTTTCGGGCGCATACCTCTTTCTGGTGTTCTTC
CACTGAACTGGACAGTAGGAATGGTTGGAATTTTAGCAGCCACTGTAGAA
GATGCATTGGTTGTTTATGCAGCTATTAATGGTCCACTTCCTTCCCAACA
GCCCACTGTTTCATTGCCAAAAGTATCGTTCCCACTGCTGAAGTCTGCAA
CATCAATATCAGCCATCAAATTGGGCAAGTATGATGCGTGGTTCAACGA
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