FC878075

Overview
NameFC878075
Unique NameFC878075
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length849
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: AMI4_MYCBO (Putative amidase amiD OS=Mycobacterium bovis GN=amiD PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.041e-19
Identity = 68/202 (33.66%), Postives = 92/202 (45.54%), Query Frame = 2
Query:  128 ESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            E  +P +K   F+    E  L  A  +     +G    VL GV I VKD       PT  GT      RP   DA  V RLR  GA+++GK  M E      G +P      NP+DP+                 LC  ++G D GGS+R P ++CGV G KPT+GR+   GV+ L  +   VG +  +  DA V+ + I G
Sbjct:   48 ERLDPQLKSYAFVM--PETALAAARAADADIARGHYEGVLHGVPIGVKDLCYTVDAPTAAGTTIFRDFRPAY-DATVVARLRAAGAVIIGKLAMTE--GAYLGYHPSLPTPVNPWDPTAWAGVSSSGCGVATAAGLCFGSIGSDTGGSIRFPTSMCGVTGIKPTWGRVSRHGVVELAASYDHVGPITRSAHDAAVLLSVIAG 244          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_SYNPW (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Synechococcus sp. (strain WH7803) GN=gatA PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.360e-19
Identity = 63/241 (26.14%), Postives = 111/241 (46.06%), Query Frame = 2
Query:   47 VLDYSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLP 769
            + ++ +  ++G+++ R + +  +  + E+  P +    F+    E     A         GE +  L G+ +A+KD +      TT  ++ L +  P   ++    RL   GA+L+GKTN+ E   G S     +G   NP++P  +                C  ++G D GGS+R PA+ CGVVG KPT+GRI   G++    ++  VG  + +V DA  +   + G  P     ++ P
Sbjct:    3 IAEWRQQLANGEVSARELTDHHLARI-EAVEPGIHA--FLEVTAERARADADRVDEARASGEDLPPLAGIPLAIKDNLCTRGVRTTCSSRMLEQFVP-PYESTVTERLWAAGAVLLGKTNLDEFAMGGSTETSAFGPTANPWNPEHVPGGSSGGSAAAVASGECLASIGSDTGGSIRQPASFCGVVGLKPTYGRISRYGLVAFASSLDQVGPFSHSVADAAELLQVMAGADPRDSTCLNAP 239          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_STRTD (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) GN=gatA PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.360e-19
Identity = 67/215 (31.16%), Postives = 102/215 (47.44%), Query Frame = 2
Query:   59 SKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVED 703
            SK  S+ ++T   + +  I A  E+ N       F+   EE  L QA    +  K  +  ++L G+  AVKD I      TT  +K L+   P   DA  V   +    I++GKTNM E   G SG   +YG  +N +D SK+                  ++LG D GGS+R PAA  G+VG KPT+G +   G++    ++  +G  + TV++
Sbjct:   17 SKEISATELTQATIDD--IKAREEAVNA------FVTVAEEAALAQA--EAIDEKGIDADNLLSGIPFAVKDNISTDGILTTAASKMLYNYEPIF-DATAVANAKAKDMIVIGKTNMDEFAMGGSGETSYYGATKNAWDHSKVPGGSSSGSAAAVASGQVRLSLGSDTGGSIRQPAAFNGIVGLKPTYGTVSRFGLIAFGSSLDQIGTFSQTVKE 220          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_STRT2 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) GN=gatA PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.360e-19
Identity = 67/215 (31.16%), Postives = 102/215 (47.44%), Query Frame = 2
Query:   59 SKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVED 703
            SK  S+ ++T   + +  I A  E+ N       F+   EE  L QA    +  K  +  ++L G+  AVKD I      TT  +K L+   P   DA  V   +    I++GKTNM E   G SG   +YG  +N +D SK+                  ++LG D GGS+R PAA  G+VG KPT+G +   G++    ++  +G  + TV++
Sbjct:   17 SKEISATELTQATIDD--IKAREEAVNA------FVTVAEEAALAQA--KAIDEKGIDADNLLSGIPFAVKDNISTDGILTTAASKMLYNYEPIF-DATAVANAKAKDMIVIGKTNMDEFAMGGSGETSYYGATKNAWDHSKVPGGSSSGSAAAVASGQVRLSLGSDTGGSIRQPAAFNGIVGLKPTYGTVSRFGLIAFGSSLDQIGTFSQTVKE 220          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_STRT1 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Streptococcus thermophilus (strain CNRZ 1066) GN=gatA PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.360e-19
Identity = 67/215 (31.16%), Postives = 102/215 (47.44%), Query Frame = 2
Query:   59 SKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVED 703
            SK  S+ ++T   + +  I A  E+ N       F+   EE  L QA    +  K  +  ++L G+  AVKD I      TT  +K L+   P   DA  V   +    I++GKTNM E   G SG   +YG  +N +D SK+                  ++LG D GGS+R PAA  G+VG KPT+G +   G++    ++  +G  + TV++
Sbjct:   17 SKEISATELTQATIDD--IKAREEAVNA------FVTVAEEAALAQA--KAIDEKGIDADNLLSGIPFAVKDNISTDGILTTAASKMLYNYEPIF-DATAVANAKAKDMIVIGKTNMDEFAMGGSGETSYYGATKNAWDHSKVPGGSSSGSAAAVASGQVRLSLGSDTGGSIRQPAAFNGIVGLKPTYGTVSRFGLIAFGSSLDQIGTFSQTVKE 220          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_RHOS5 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=gatA PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.360e-19
Identity = 70/249 (28.11%), Postives = 116/249 (46.59%), Query Frame = 2
Query:   44 TVLDYSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPY--DPSKITXXXXXXXXXXXXXX-LCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSF 781
            T+ +   A + G+++   +    +TA+ ++  P   ++ F++   E  L QA  S  R  +GE    L+G+ + +KD        +   +  L   +P   ++    +L   GA+++GK NM E   G+S     YG A NP+  D  K+T               LC  A G D GGS+R PAA  G+VG KPT+GR+   G++    ++   G +  TV DA ++  A+ G  P    +  +P   F
Sbjct:    7 TIAEARDALAKGELSAVDLTMACLTAI-DAGTP---LNAFVHLTPEIALDQARASDAR--RGEGAGALNGIPLGIKDLFCTRGVASQAASNILKGFKP-EYESTVTSKLFAAGAVMLGKLNMDEFAMGSSNETSCYGDAVNPWKVDDRKLTPGGSSGGSAAAVAADLCLGATGTDTGGSIRQPAAFTGIVGIKPTYGRVSRWGIVAFASSLDQAGPMTKTVRDAAILLGAMAGHDPKDSTSADIPVPDF 248          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_NITSB (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Nitratiruptor sp. (strain SB155-2) GN=gatA PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.360e-19
Identity = 57/162 (35.19%), Postives = 80/162 (49.38%), Query Frame = 2
Query:  248 DGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            +GV +A+KD I    +  T  +K L K      DA  + +LR  G    G+TNM E   G++     YG   NP D S++               +   ALG D GGS+R PAA CGVVG KPT+GR+   G+     ++  +G +   VEDA ++Y  I G
Sbjct:   43 EGVPVAIKDNIQVDGWEVTCASKIL-KGYIAPYDATVIQKLRANGLAPFGRTNMDEFAMGSTTETSCYGKTLNPKDTSRVPGGSSGGSAAAVAAGIAIAALGSDTGGSIRQPAAFCGVVGMKPTYGRVSRYGLAAYGSSLDQIGPMTQNVEDAAILYNIIAG 203          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_MYCLE (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Mycobacterium leprae GN=gatA PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.360e-19
Identity = 61/169 (36.09%), Postives = 84/169 (49.70%), Query Frame = 2
Query:  227 GEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            G+  S L GV +A+KD       PTT G+K L        DA    RLR  G  ++GKTNM E   G+S  N  YG  RNP++  ++                 P+A+G D GGS+R PAAL   VG KPT+G +   G++    ++   G  A TV D  +++A I G
Sbjct:   71 GQLSSTLAGVPLALKDVFTTVDMPTTCGSKILQGWHS-PYDATVTTRLRAAGIPILGKTNMDEFAMGSSTENSAYGPTRNPWNVDRVPGGSGGGSAAALAAFQAPLAIGSDTGGSIRQPAALTATVGVKPTYGTVSRYGLVACASSLDQGGPCARTVLDTALLHAVIAG 238          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_MYCGE (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Mycoplasma genitalium GN=gatA PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.360e-19
Identity = 61/185 (32.97%), Postives = 90/185 (48.65%), Query Frame = 2
Query:  164 INNNEEDILKQATES-TLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVV 715
            +N +   +LK   E  + +  K +   +L+ +   +KD I      TTGG+ +L    P    A     L + GA+LVGK NM E G G +G    +GV  +P + S I               + P ++  D G S+R PA++C VVGFKPT+G I  +GV P   ++  VGI A  V D  +V
Sbjct:   32 LNKSSNFLLKNTVEIYSKKINKSDEKILLNNIPYVLKDNIATKDIVTTGGSLFLKNYLP-PFSATVFELLEMNGALLVGKANMDEFGLGGTGSYSAFGVVHHPENSSLIAGGSSSGSAYAVAKDIVPFSIATDTGDSIRRPASICNVVGFKPTYGLISRNGVFPYAPSMDHVGIFAKFVSDIAIV 215          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_EHRCR (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Ehrlichia chaffeensis (strain Arkansas) GN=gatA PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.360e-19
Identity = 69/217 (31.80%), Postives = 104/217 (47.93%), Query Frame = 2
Query:  149 KMSFFINNNEEDILKQATESTLRYK-KGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSK----ITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING--PLPSQQPTVSLPKVS 778
            K++ FI    E  L  A ++   +  + E ++ L G+ + +KD        TT  +  L    P   D+    RL   GA+++GK NM E   G+S  N  +G  +NP+  +     +               LC  ALG D GGSVR PAALCG+VG KPT+GR    G++    ++   G+L  TVEDA ++  +I G     S    +++PK S
Sbjct:   38 KLNAFITKTPEIALSAAEKADYIFTHQKENLTPLTGIPVGIKDLFCTKHVRTTACSNILKNFTP-QYDSTVTKRLLDNGAVMLGKLNMDEFAMGSSNSNSCFGHVKNPWVRADGVEVVPGGSSGGSSAAVAGFLCAGALGSDTGGSVRQPAALCGIVGLKPTYGRCSRFGMIAFASSLDQAGVLTRTVEDASLMLQSICGYDIQDSTSANIAVPKFS 253          
The following BLAST results are available for this feature:
BLAST of FC878075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
AMI4_MYCBO1.041e-1933.66Putative amidase amiD OS=Mycobacterium bovis GN=am... [more]
GATA_SYNPW1.360e-1926.14Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_STRTD1.360e-1931.16Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_STRT21.360e-1931.16Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_STRT11.360e-1931.16Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_RHOS51.360e-1928.11Glutamyl-tRNA(Gln) amidotransferase subunit A OS=R... [more]
GATA_NITSB1.360e-1935.19Glutamyl-tRNA(Gln) amidotransferase subunit A OS=N... [more]
GATA_MYCLE1.360e-1936.09Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_MYCGE1.360e-1932.97Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_EHRCR1.360e-1931.80Glutamyl-tRNA(Gln) amidotransferase subunit A OS=E... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA35BB11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA35BB11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878075 ID=FC878075; Name=FC878075; organism=Citrus clementina; type=EST; length=849bp
TCTGCCTCTGTCTTCAGAAAAGCAGCCGTTTTTCCATCGCTGGACTGTAT
TAGATTATTCAAAAGCCTACAGTTCCGGAGATATTACTCCTCGTATGGTA
GCAGAGCGGTTTATAACCGCAGTACGTGAGTCTTCAAACCCTCCAATGAA
AATGTCATTCTTCATTAACAACAATGAAGAAGATATTCTAAAGCAAGCTA
CAGAGTCGACTCTTCGGTATAAAAAAGGAGAGCCAATATCGGTTCTAGAT
GGAGTCCTAATTGCAGTCAAGGATGAAATTGATTGTTCTCCTTACCCAAC
TACAGGAGGCACCAAGTGGTTGCATAAAGTTAGACCTTGCACAGGTGATG
CATGCTGCGTTATGCGCCTCAGATTGTGCGGCGCCATACTTGTTGGGAAA
ACTAATATGCATGAGCTCGGGGCTGGAACAAGTGGGATAAATCCTCATTA
TGGGGTCGCTAGAAATCCATACGACCCCAGCAAAATCACTGGGGGTTCTT
CTAGTGGATCAGCAGCAGTGGTGGCTGCAGGATTGTGCCCTGTCGCCCTT
GGTGTTGATGGAGGAGGATCCGTGCGGATGCCTGCAGCTCTCTGTGGTGT
TGTTGGTTTTAAGCCAACTTTCGGGCGCATACCTCTTTCTGGTGTTCTTC
CACTGAACTGGACAGTAGGAATGGTTGGAATTTTAGCAGCCACTGTAGAA
GATGCATTGGTTGTTTATGCAGCTATTAATGGTCCACTTCCTTCCCAACA
GCCCACTGTTTCATTGCCAAAAGTATCGTTCCCACTGCTGAAGTCTGCAA
CATCAATATCAGCCATCAAATTGGGCAAGTATGATGCGTGGTTCAACGA
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