FC878075

Overview
NameFC878075
Unique NameFC878075
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length849
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_CAMJR (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Campylobacter jejuni (strain RM1221) GN=gatA PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.360e-19
Identity = 56/163 (34.36%), Postives = 84/163 (51.53%), Query Frame = 2
Query:  248 DGVLIAVKDEIDCSPYPTTGGTKWLHK-VRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            +GV +A+KD I    +  T  +K L   + P   DA  ++ L+  G    G+ NM E   G+S  + +YG   NP +  ++               L   +LG D GGSVR PAA CG VGFKP++GR+   G+   + ++  +G+L   VEDA ++Y AI G
Sbjct:   49 EGVPVAIKDNISVKGWELTSASKILQGYIAPY--DASVIVNLKANGFSPFGRCNMDEFAMGSSTASSYYGKTLNPLNFERVPGGSSGGSAAAVAGGLALASLGSDTGGSVRQPAAFCGCVGFKPSYGRVSRYGLASYSSSLDQIGVLTQNVEDAAILYDAIAG 209          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_CAMJ8 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828) GN=gatA PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.360e-19
Identity = 56/163 (34.36%), Postives = 84/163 (51.53%), Query Frame = 2
Query:  248 DGVLIAVKDEIDCSPYPTTGGTKWLHK-VRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            +GV +A+KD I    +  T  +K L   + P   DA  ++ L+  G    G+ NM E   G+S  + +YG   NP +  ++               L   +LG D GGSVR PAA CG VGFKP++GR+   G+   + ++  +G+L   VEDA ++Y AI G
Sbjct:   49 EGVPVAIKDNISVKGWELTSASKILQGYIAPY--DASVIVNLKANGFSPFGRCNMDEFAMGSSTASSYYGKTLNPLNFERVPGGSSGGSAAAVAGGLALASLGSDTGGSVRQPAAFCGCVGFKPSYGRVSRYGLASYSSSLDQIGVLTQNVEDAAILYDAIAG 209          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_NITMU (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=gatA PE=3 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.776e-19
Identity = 66/213 (30.99%), Postives = 100/213 (46.95%), Query Frame = 2
Query:   95 MVAERFITAVRESS---------NPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHK-VRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVED 703
            M+A R I++V  +S         NP       ++        QA +  +   +G+P++   GV IA KD      + TT G+K L   + P   DA  + R    GA+ +GKTNM E   G+S     YG  +NP+D + +               + P A G D GGS+R PAALCG+ G KPT+G +   G++    ++   G +A + ED
Sbjct:   12 MLAARKISSVELTSEFLKRSRALNPEYNAFITLDERTSLAQAQAADILIGSGRGQPLT---GVPIAQKDIFCTKGWLTTCGSKMLSNFISPY--DAHVIGRFNAVGAVNIGKTNMDEFAMGSSNETSFYGPVKNPWDTAAVPGGSSGGSACAVAARMAPAATGTDTGGSIRQPAALCGISGLKPTYGLVSRYGMIAFASSLDQGGPMAKSAED 219          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_NEIM0 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Neisseria meningitidis serogroup C (strain 053442) GN=gatA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.776e-19
Identity = 67/248 (27.02%), Postives = 115/248 (46.37%), Query Frame = 2
Query:   38 RWTVLDYSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSF 781
            ++T+   S    S  I+   +A  ++ A+ E  NP +  + +I  +++  L +A  +  R  +G   S L G+ +A KD    + + +   +K L      +  A  V  L   G + +G+TNM E   G++  N  YG  +NP++P  +               L P ALG D GGS+R PA+ CG+ G KPT+G +   G++    +    G +A T ED  ++  A+ G  P    ++   K  +
Sbjct:    3 QYTLKQASVLLQSKQISAVELASAYLAAIAEK-NPAL--NGYITIDQDKTLAEARAADERIAQGNA-SALTGIPVAYKDIFCQTGWRSACASKMLDNFIS-SYTATVVQNLLDEGMVTLGRTNMDEFAMGSTNENSFYGATKNPWNPEHVPGGSSGGSAAVVAARLAPAALGSDTGGSIRQPASHCGITGIKPTYGTVSRFGMVAYASSFDQAGPMAQTAEDCAILLNAMAGFDPKDSTSLEREKEDY 245          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_LISMF (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Listeria monocytogenes serotype 4b (strain F2365) GN=gatA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.776e-19
Identity = 66/211 (31.28%), Postives = 99/211 (46.92%), Query Frame = 2
Query:  149 KMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSF 781
            K+  FI  N+E     A E  L     +P ++L G+ I +KD I      TT  +K L    P   DA  V +L+    I +GK NM E   G+S    ++    NP+D S++                   +LG D GGS+R PAA CGVVG KPT+GR+   G++    ++  +G +   VED   +  AI+G   +   +++ P   F
Sbjct:   39 KVGSFITLNKEAAFGVAEE--LGDAGIDPNNMLSGLPIGIKDNIVTKNLRTTAASKILENFDPIY-DATVVSKLKNAQTINIGKLNMDEFAMGSSTETSYFHKTHNPWDLSRVPGGSSGGSASAVAAGEVLFSLGSDTGGSIRQPAAFCGVVGMKPTYGRVSRFGLIAFASSLDQIGPITKNVEDNAYLLEAISGLDANDSTSINQPVERF 246          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_LISMC (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=gatA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.776e-19
Identity = 66/211 (31.28%), Postives = 99/211 (46.92%), Query Frame = 2
Query:  149 KMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSF 781
            K+  FI  N+E     A E  L     +P ++L G+ I +KD I      TT  +K L    P   DA  V +L+    I +GK NM E   G+S    ++    NP+D S++                   +LG D GGS+R PAA CGVVG KPT+GR+   G++    ++  +G +   VED   +  AI+G   +   +++ P   F
Sbjct:   39 KVGSFITLNKEAAFGVAEE--LGDAGIDPNNMLSGLPIGIKDNIVTKNLRTTAASKILENFDPIY-DATVVSKLKNAQTINIGKLNMDEFAMGSSTETSYFHKTHNPWDLSRVPGGSSGGSASAVAAGEVLFSLGSDTGGSIRQPAAFCGVVGMKPTYGRVSRFGLIAFASSLDQIGPITKNVEDNAYLLEAISGLDANDSTSINQPVERF 246          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_HALOH (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=gatA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.776e-19
Identity = 71/256 (27.73%), Postives = 115/256 (44.92%), Query Frame = 2
Query:   80 DITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSISAIKLGKYDAWFN 847
            +++P  V + F   + E  +   K+  ++    ++    A  S    K G     L G+ +A+KD I      TT  +K L+  +P   DA  V RL+  G I +GKTNM E   G+S  N  +    NP++                     P ALG D GGS+R PAA CGVVG KPT+G +   G++    ++  +G +   V D+ ++   I+G  P    +V   K  +        +  +K+G  + +F+
Sbjct:   19 EVSPEEVLDSFYKRIDEVED---KVKAYVTLTRDE----ARNSLASLKDGR----LAGIPLAIKDNISTRGIKTTCSSKILNNYKP-PYDATVVKRLKEEGGITLGKTNMDEFAMGSSTENSGFYPTHNPWNLDHAPGGSSGGSAAAVAAGEAPGALGSDTGGSIRQPAAFCGVVGLKPTYGCVSRYGLVAFASSLDQIGPITKDVTDSALLLNVISGHDPMDSTSVDREKEDYTTYLK-DDVKGMKIGLPEEYFS 261          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_CAMLR (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Campylobacter lari (strain RM2100 / D67 / ATCC BAA-1060) GN=gatA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.776e-19
Identity = 57/163 (34.97%), Postives = 81/163 (49.69%), Query Frame = 2
Query:  248 DGVLIAVKDEIDCSPYPTTGGTKWLHK-VRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            DGV +A+KD I    +  T  +K L   V P   DA  +  LR       G+ NM E   G++     YG   NP+D +K+               L   +LG D GGSVR PAA CG VGFKP++GR+   G+   + ++  +G+L   V+DA ++Y  I G
Sbjct:   49 DGVPVAIKDNISVKDWELTCASKILQGYVAPY--DASVITNLRKNNLSPFGRCNMDEFAMGSTSATSFYGKTLNPHDNTKVPGGSSGGSAAAVASGLAIASLGSDTGGSVRQPAAFCGCVGFKPSYGRVSRYGLAAYSSSLDQIGVLTQNVKDAAILYDVIAG 209          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_BURTA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=gatA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.776e-19
Identity = 62/194 (31.96%), Postives = 93/194 (47.94%), Query Frame = 2
Query:  152 MSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            ++ F++ + E  L QA  +     KGE    L G+ IA KD      + +T G+K L        DA  V RL   G + +GKTNM E   G+S  N  +G  +NP+D + +               L P A G D GGS+R PA+  GV G KPT+GR+   G++    ++   G +A +  D  ++  A+ G
Sbjct:   37 LNAFVHVDAELTLAQAKAADAALAKGEA-GPLAGLPIAHKDVFVTRGWRSTAGSKMLANYAS-PFDATVVARLSAAGMVTLGKTNMDEFAMGSSNENSAFGPVKNPWDTNAVPGGSSGGSSAAVAARLAPAATGTDTGGSIRQPASFAGVTGIKPTYGRVSRYGMIAFASSLDQGGPMARSAADCALLLNAMAG 228          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_BURCM (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=gatA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.776e-19
Identity = 59/194 (30.41%), Postives = 94/194 (48.45%), Query Frame = 2
Query:  152 MSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            ++ F++ + +  L QA  +     +G     L G+ IA KD      + +T G+K L        DA  V RL+  G + +GKTNM E   G+S  N  +G  +NP+D + +               L P A G D GGS+R PA+  GV G KPT+GR+   G++    ++   G +A +  D  ++  A++G
Sbjct:   37 LNAFVHVDADLTLAQAKAADAELARGAG-GALTGLPIAHKDVFVTRGWRSTAGSKMLANYES-PFDATVVARLQAAGMVTLGKTNMDEFAMGSSNENSAFGAVKNPWDTNAVPGGSSGGSSAAVAARLAPAATGTDTGGSIRQPASFAGVTGIKPTYGRVSRYGMIAFASSLDQGGPMAQSASDCALLLNAMSG 228          
The following BLAST results are available for this feature:
BLAST of FC878075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_CAMJR1.360e-1934.36Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_CAMJ81.360e-1934.36Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_NITMU1.776e-1930.99Glutamyl-tRNA(Gln) amidotransferase subunit A OS=N... [more]
GATA_NEIM01.776e-1927.02Glutamyl-tRNA(Gln) amidotransferase subunit A OS=N... [more]
GATA_LISMF1.776e-1931.28Glutamyl-tRNA(Gln) amidotransferase subunit A OS=L... [more]
GATA_LISMC1.776e-1931.28Glutamyl-tRNA(Gln) amidotransferase subunit A OS=L... [more]
GATA_HALOH1.776e-1927.73Glutamyl-tRNA(Gln) amidotransferase subunit A OS=H... [more]
GATA_CAMLR1.776e-1934.97Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_BURTA1.776e-1931.96Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_BURCM1.776e-1930.41Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA35BB11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA35BB11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878075 ID=FC878075; Name=FC878075; organism=Citrus clementina; type=EST; length=849bp
TCTGCCTCTGTCTTCAGAAAAGCAGCCGTTTTTCCATCGCTGGACTGTAT
TAGATTATTCAAAAGCCTACAGTTCCGGAGATATTACTCCTCGTATGGTA
GCAGAGCGGTTTATAACCGCAGTACGTGAGTCTTCAAACCCTCCAATGAA
AATGTCATTCTTCATTAACAACAATGAAGAAGATATTCTAAAGCAAGCTA
CAGAGTCGACTCTTCGGTATAAAAAAGGAGAGCCAATATCGGTTCTAGAT
GGAGTCCTAATTGCAGTCAAGGATGAAATTGATTGTTCTCCTTACCCAAC
TACAGGAGGCACCAAGTGGTTGCATAAAGTTAGACCTTGCACAGGTGATG
CATGCTGCGTTATGCGCCTCAGATTGTGCGGCGCCATACTTGTTGGGAAA
ACTAATATGCATGAGCTCGGGGCTGGAACAAGTGGGATAAATCCTCATTA
TGGGGTCGCTAGAAATCCATACGACCCCAGCAAAATCACTGGGGGTTCTT
CTAGTGGATCAGCAGCAGTGGTGGCTGCAGGATTGTGCCCTGTCGCCCTT
GGTGTTGATGGAGGAGGATCCGTGCGGATGCCTGCAGCTCTCTGTGGTGT
TGTTGGTTTTAAGCCAACTTTCGGGCGCATACCTCTTTCTGGTGTTCTTC
CACTGAACTGGACAGTAGGAATGGTTGGAATTTTAGCAGCCACTGTAGAA
GATGCATTGGTTGTTTATGCAGCTATTAATGGTCCACTTCCTTCCCAACA
GCCCACTGTTTCATTGCCAAAAGTATCGTTCCCACTGCTGAAGTCTGCAA
CATCAATATCAGCCATCAAATTGGGCAAGTATGATGCGTGGTTCAACGA
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