FC878075

Overview
NameFC878075
Unique NameFC878075
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length849
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_BURA4 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Burkholderia ambifaria (strain MC40-6) GN=gatA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.776e-19
Identity = 59/194 (30.41%), Postives = 94/194 (48.45%), Query Frame = 2
Query:  152 MSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            ++ F++ + +  L QA  +     +G     L G+ IA KD      + +T G+K L        DA  V RL+  G + +GKTNM E   G+S  N  +G  +NP+D + +               L P A G D GGS+R PA+  GV G KPT+GR+   G++    ++   G +A +  D  ++  A++G
Sbjct:   37 LNAFVHVDADLTLAQAKAADAELARGAG-GALTGLPIAHKDVFVTRGWRSTAGSKMLANYES-PFDATVVARLQAAGMVTLGKTNMDEFAMGSSNENSAFGAVKNPWDTNAVPGGSSGGSSAAVAARLAPAATGTDTGGSIRQPASFAGVTGIKPTYGRVSRYGMIAFASSLDQGGPMAQSASDCALLLNAMSG 228          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: HYIN2_AGRVI (Indoleacetamide hydrolase OS=Agrobacterium vitis GN=TA-iaaH PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.319e-19
Identity = 64/185 (34.59%), Postives = 86/185 (46.49%), Query Frame = 2
Query:  245 LDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING------PLPSQQPTVSLPKVSF 781
            L G+ +  K  I    +PTT  T  L    P         RL   GA+     NMHEL  G +  N   G  RNP++PS I               L    +G D G SVR+PAALCGVVGF+PT GR P   ++P++ T    GI+A  V D +++   I+G      P+P +   + LP   F
Sbjct:   66 LRGIPLCFKANIATGIFPTTAATPALINHLPKIPSRIAE-RLFSAGALPGASGNMHELSFGITSNNYATGAVRNPWNPSLIPGGSSGGVAAAVASRLMLGGIGTDTGASVRLPAALCGVVGFRPTLGRYPRDRIIPVSPTRDTAGIIAQCVADVVILDQVISGRPARILPIPLKGLRIGLPTTYF 249          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_STAAU (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Staphylococcus aureus GN=gatA PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.319e-19
Identity = 69/233 (29.61%), Postives = 109/233 (46.78%), Query Frame = 2
Query:   83 ITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSF 781
            I P  V +    A+ E+ +P +K   F+  ++E+ +K+A E      K +    L G+ + +KD I  +   TT  +K L    P   ++  + +L    A+L+GK NM E   G S          NP+D   +               L P +LG D GGS+R PAA CGVVG KPT+GR+   G++    ++  +G L   V+D  +V  AI+G   +   +  +  V F
Sbjct:   20 IKPSDVVKDIYDAIEET-DPTIKS--FLALDKENAIKKAQELDELQAKDQMDGKLFGIPMGIKDNIITNGLETTCASKMLEGFVPIY-ESTVMEKLHNENAVLIGKLNMDEFAMGGSTETSISKKTVNPFDHKAVPGGSSGGSAAAVAAGLVPFSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAIVLEAISGADANDSTSAPVDDVDF 248          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_NITEU (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Nitrosomonas europaea GN=gatA PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.319e-19
Identity = 70/222 (31.53%), Postives = 104/222 (46.85%), Query Frame = 2
Query:   71 SSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHK-VRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            S   I+   +   F++ ++ + NP +    FI  +EE  L QA  +      G   + L G+ IA KD      + TT G+K L   V P   DA  V R    G + +GKTNM E   G+S    +YG  +NP+D   +               L P A G D GGS+R PAALCG+ G KPT+G +   G++    ++   G +A + ED  ++   + G
Sbjct:   14 SEKKISSTELTSEFLSRIK-ALNPDLNA--FITIDEEKSLDQANVADKMIAAGRS-TPLTGIPIAQKDIFCARGWLTTCGSKMLSNFVSPY--DATVVERFDQAGMVNLGKTNMDEFAMGSSNETSYYGPVKNPWDRLAVPGGSSGGSACAVAARLAPAATGSDTGGSIRQPAALCGISGIKPTYGLVSRYGMIAFASSLDQGGPMAKSAEDLALLLNTMVG 229          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_LISW6 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=gatA PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.319e-19
Identity = 66/211 (31.28%), Postives = 99/211 (46.92%), Query Frame = 2
Query:  149 KMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSF 781
            K+  FI  N+E     A E  L     +P ++L G+ I +KD I      TT  +K L    P   DA  V +L+    I +GK NM E   G+S    ++    NP+D S++                   +LG D GGS+R PAA CGVVG KPT+GR+   G++    ++  +G +   VED   +  AI+G   +   +++ P   F
Sbjct:   39 KVGSFITLNKEAAFDVAEE--LGDAGIDPNNMLAGLPIGIKDNIVTKNLRTTAASKILENFDPIY-DATVVSKLKNAQTINIGKLNMDEFAMGSSTETSYFHKTHNPWDLSRVPGGSSGGSASAVAAGEVLFSLGSDTGGSIRQPAAFCGVVGMKPTYGRVSRFGLIAFASSLDQIGPITKNVEDNAYLLEAISGLDANDSTSINQPVERF 246          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_LISMH (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=gatA PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.319e-19
Identity = 66/211 (31.28%), Postives = 99/211 (46.92%), Query Frame = 2
Query:  149 KMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSF 781
            K+  FI  N+E     A E  L     +P ++L G+ I +KD I      TT  +K L    P   DA  V +L+    I +GK NM E   G+S    ++    NP+D S++                   +LG D GGS+R PAA CGVVG KPT+GR+   G++    ++  +G +   VED   +  AI+G   +   +++ P   F
Sbjct:   39 KVGSFITLNKEAAFGVAEE--LGDAGIDPNNMLAGLPIGIKDNIVTKSLRTTAASKILENFDPIY-DATVVSKLKNAQTINIGKLNMDEFAMGSSTETSYFHKTHNPWDLSRVPGGSSGGSASAVAAGEVLFSLGSDTGGSIRQPAAFCGVVGMKPTYGRVSRFGLIAFASSLDQIGPITKNVEDNAYLLEAISGLDANDSTSINQPVERF 246          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_HALMA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Haloarcula marismortui GN=gatA PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.319e-19
Identity = 62/176 (35.23%), Postives = 83/176 (47.16%), Query Frame = 2
Query:  245 LDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPK 772
            L G  +AVKD I      TT G+  L    P   DA  V RL+  GA + GKTNM E G GT+     +G   NP    ++                  +ALG D GGS+R PAA CGVVG KPT+G +   G++    ++  +G +A +VE A  +   I GP      T   P+
Sbjct:   21 LAGKTVAVKDNISTEGVRTTCGSAMLEDYVP-PYDATVVERLKDAGATIPGKTNMDEFGMGTTTETSAFGAVENPAAEGRVPGGSSGGSAAVVAAGDADLALGSDTGGSIRCPAAFCGVVGIKPTYGLVSRYGLIAYANSLEQIGPIAPSVEGAAELLDVIAGPDEHDATTQEAPE 195          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_BURVG (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=gatA PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.319e-19
Identity = 60/194 (30.93%), Postives = 93/194 (47.94%), Query Frame = 2
Query:  152 MSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            ++ F++ + +  L QA  +     +G     L GV IA KD      + +T G+K L   +    DA  V RL+  G + +GKTNM E   G+S  N  +G  +NP+D   +               L P A G D GGS+R PA+  GV G KPT+GR+   G++    ++   G +A +  D  ++  A+ G
Sbjct:   37 LNAFVHVDADLTLAQAKAADAELARGAG-GPLTGVPIAHKDVFVTRGWRSTAGSKMLENYQS-PFDATVVARLQAAGMVTLGKTNMDEFAMGSSNENSAFGAVKNPWDTHAVPGGSSGGSSAAVAARLAPAATGTDTGGSIRQPASFAGVTGIKPTYGRVSRYGMIAFASSLDQGGPMAQSASDCALLLNAMAG 228          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_STRMU (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Streptococcus mutans GN=gatA PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.029e-19
Identity = 61/191 (31.94%), Postives = 97/191 (50.79%), Query Frame = 2
Query:  161 FINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            FI   +E+ L QA  + +  K  +  +V+ G+ +AVKD I      TT  +K L+  +P   DA  V +L     I+VGKTNM E   G S  N ++ + +N ++  K+                  ++LG D GGS+R PAA  GVVG KPT+GR+   G++    ++  +G  + TV++   +   I+G
Sbjct:   43 FITVTQEEALAQA--AAIDEKGIDADNVMSGIPLAVKDNISTKNILTTAASKMLYNYKPIF-DATSVEKLYGRDMIIVGKTNMDEFAMGGSTENSYFKLTKNAWNQEKVAGGSSGGSATAVASGQVRLSLGSDTGGSIRQPAAFNGVVGIKPTYGRVSRFGLIAFGSSLDQIGPFSQTVKENAQLLNVISG 230          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_LISMO (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Listeria monocytogenes GN=gatA PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.029e-19
Identity = 66/211 (31.28%), Postives = 99/211 (46.92%), Query Frame = 2
Query:  149 KMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSF 781
            K+  FI  N+E     A E  L     +P ++L G+ I +KD I      TT  +K L    P   DA  V +L+    I +GK NM E   G+S    ++    NP+D S++                   +LG D GGS+R PAA CGVVG KPT+GR+   G++    ++  +G +   VED   +  AI+G   +   +++ P   F
Sbjct:   39 KVGSFITLNKEAAFGVAEE--LGDAGIDPNNMLAGLPIGIKDNIVTKNLRTTAASKILENFDPIY-DATVVSKLKNAQTINIGKLNMDEFAMGSSTETSYFHKTHNPWDLSRVPGGSSGGSASAVAAGEVLFSLGSDTGGSIRQPAAFCGVVGMKPTYGRVSRFGLIAFASSLDQIGPITKNVEDNAYLLEAISGLDANDSTSINQPVERF 246          
The following BLAST results are available for this feature:
BLAST of FC878075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_BURA41.776e-1930.41Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
HYIN2_AGRVI2.319e-1934.59Indoleacetamide hydrolase OS=Agrobacterium vitis G... [more]
GATA_STAAU2.319e-1929.61Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_NITEU2.319e-1931.53Glutamyl-tRNA(Gln) amidotransferase subunit A OS=N... [more]
GATA_LISW62.319e-1931.28Glutamyl-tRNA(Gln) amidotransferase subunit A OS=L... [more]
GATA_LISMH2.319e-1931.28Glutamyl-tRNA(Gln) amidotransferase subunit A OS=L... [more]
GATA_HALMA2.319e-1935.23Glutamyl-tRNA(Gln) amidotransferase subunit A OS=H... [more]
GATA_BURVG2.319e-1930.93Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_STRMU3.029e-1931.94Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_LISMO3.029e-1931.28Glutamyl-tRNA(Gln) amidotransferase subunit A OS=L... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA35BB11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA35BB11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878075 ID=FC878075; Name=FC878075; organism=Citrus clementina; type=EST; length=849bp
TCTGCCTCTGTCTTCAGAAAAGCAGCCGTTTTTCCATCGCTGGACTGTAT
TAGATTATTCAAAAGCCTACAGTTCCGGAGATATTACTCCTCGTATGGTA
GCAGAGCGGTTTATAACCGCAGTACGTGAGTCTTCAAACCCTCCAATGAA
AATGTCATTCTTCATTAACAACAATGAAGAAGATATTCTAAAGCAAGCTA
CAGAGTCGACTCTTCGGTATAAAAAAGGAGAGCCAATATCGGTTCTAGAT
GGAGTCCTAATTGCAGTCAAGGATGAAATTGATTGTTCTCCTTACCCAAC
TACAGGAGGCACCAAGTGGTTGCATAAAGTTAGACCTTGCACAGGTGATG
CATGCTGCGTTATGCGCCTCAGATTGTGCGGCGCCATACTTGTTGGGAAA
ACTAATATGCATGAGCTCGGGGCTGGAACAAGTGGGATAAATCCTCATTA
TGGGGTCGCTAGAAATCCATACGACCCCAGCAAAATCACTGGGGGTTCTT
CTAGTGGATCAGCAGCAGTGGTGGCTGCAGGATTGTGCCCTGTCGCCCTT
GGTGTTGATGGAGGAGGATCCGTGCGGATGCCTGCAGCTCTCTGTGGTGT
TGTTGGTTTTAAGCCAACTTTCGGGCGCATACCTCTTTCTGGTGTTCTTC
CACTGAACTGGACAGTAGGAATGGTTGGAATTTTAGCAGCCACTGTAGAA
GATGCATTGGTTGTTTATGCAGCTATTAATGGTCCACTTCCTTCCCAACA
GCCCACTGTTTCATTGCCAAAAGTATCGTTCCCACTGCTGAAGTCTGCAA
CATCAATATCAGCCATCAAATTGGGCAAGTATGATGCGTGGTTCAACGA
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