FC878075
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_CAMJD (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97) GN=gatA PE=3 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 3.029e-19 Identity = 56/163 (34.36%), Postives = 83/163 (50.92%), Query Frame = 2 Query: 248 DGVLIAVKDEIDCSPYPTTGGTKWLHK-VRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733 +GV +A+KD I + T +K L + P DA ++ L+ G G+ NM E G+S + YG NP + ++ L +LG D GGSVR PAA CG VGFKP++GR+ G+ + ++ +G+L VEDA ++Y AI G Sbjct: 49 EGVPVAIKDNISVKGWELTSASKILQGYIAPY--DASAIVNLKANGFAPFGRCNMDEFAMGSSTASSCYGKTLNPLNFERVPGGSSGGSAAAVAGGLALASLGSDTGGSVRQPAAFCGCVGFKPSYGRVSRYGLASYSSSLDQIGVLTQNVEDAAILYDAIAG 209
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_BURPS (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Burkholderia pseudomallei GN=gatA PE=3 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 3.029e-19 Identity = 62/194 (31.96%), Postives = 92/194 (47.42%), Query Frame = 2 Query: 152 MSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733 ++ F++ + E L QA + GE L G+ IA KD + +T G+K L DA V RL G + +GKTNM E G+S N +G +NP+D S + L P A G D GGS+R PA+ GV G KPT+GR+ G++ ++ G +A + D ++ A+ G Sbjct: 37 LNAFVHVDAELTLAQAKAADAALANGEA-GPLAGLPIAHKDVFVTRGWRSTAGSKMLANYAS-PFDATVVARLSAAGMVTLGKTNMDEFAMGSSNENSAFGPVKNPWDTSAVPGGSSGGSSAAVAARLAPAATGTDTGGSIRQPASFAGVTGIKPTYGRVSRYGMIAFASSLDQGGPMARSAADCALLLNAMAG 228
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_BURP6 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Burkholderia pseudomallei (strain 668) GN=gatA PE=3 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 3.029e-19 Identity = 62/194 (31.96%), Postives = 92/194 (47.42%), Query Frame = 2 Query: 152 MSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733 ++ F++ + E L QA + GE L G+ IA KD + +T G+K L DA V RL G + +GKTNM E G+S N +G +NP+D S + L P A G D GGS+R PA+ GV G KPT+GR+ G++ ++ G +A + D ++ A+ G Sbjct: 37 LNAFVHVDAELTLAQAKAADAALANGEA-GPLAGLPIAHKDVFVTRGWRSTAGSKMLANYAS-PFDATVVARLSAAGMVTLGKTNMDEFAMGSSNENSAFGPVKNPWDTSAVPGGSSGGSSAAVAAGLAPAATGTDTGGSIRQPASFAGVTGIKPTYGRVSRYGMIAFASSLDQGGPMARSAADCALLLNAMAG 228
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_BURP1 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Burkholderia pseudomallei (strain 1710b) GN=gatA PE=3 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 3.029e-19 Identity = 62/194 (31.96%), Postives = 92/194 (47.42%), Query Frame = 2 Query: 152 MSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733 ++ F++ + E L QA + GE L G+ IA KD + +T G+K L DA V RL G + +GKTNM E G+S N +G +NP+D S + L P A G D GGS+R PA+ GV G KPT+GR+ G++ ++ G +A + D ++ A+ G Sbjct: 37 LNAFVHVDAELTLAQAKAADAALANGEA-GPLAGLPIAHKDVFVTRGWRSTAGSKMLANYAS-PFDATVVARLSAAGMVTLGKTNMDEFAMGSSNENSAFGPVKNPWDTSAVPGGSSGGSSAAVAARLAPAATGTDTGGSIRQPASFAGVTGIKPTYGRVSRYGMIAFASSLDQGGPMARSAADCALLLNAMAG 228
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_BURP0 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Burkholderia pseudomallei (strain 1106a) GN=gatA PE=3 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 3.029e-19 Identity = 62/194 (31.96%), Postives = 92/194 (47.42%), Query Frame = 2 Query: 152 MSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733 ++ F++ + E L QA + GE L G+ IA KD + +T G+K L DA V RL G + +GKTNM E G+S N +G +NP+D S + L P A G D GGS+R PA+ GV G KPT+GR+ G++ ++ G +A + D ++ A+ G Sbjct: 37 LNAFVHVDAELTLAQAKAADAALANGEA-GPLAGLPIAHKDVFVTRGWRSTAGSKMLANYAS-PFDATVVARLSAAGMVTLGKTNMDEFAMGSSNENSAFGPVKNPWDTSAVPGGSSGGSSAAVAARLAPAATGTDTGGSIRQPASFAGVTGIKPTYGRVSRYGMIAFASSLDQGGPMARSAADCALLLNAMAG 228
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_WOLSU (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Wolinella succinogenes GN=gatA PE=3 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 3.956e-19 Identity = 63/186 (33.87%), Postives = 95/186 (51.08%), Query Frame = 2 Query: 182 DILKQATESTLRYKKGEPISVLDG-VLIAVKDEIDCSPYPTTGGTKWLHK-VRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733 +I K+ +ES+L GE L+G + I VKD I+ T G+K L V P +A + +L G G++NM E G++ + +G NP D S++ L ALG D GGS+R PAA CG VG KPT+GR+ G++ ++ +G + VEDA +++ AI+G Sbjct: 21 EIRKKVSESSLNAYVGEIRDSLEGGIPILVKDNINVKGSELTCGSKILEGYVAPY--NATVIEKLHAQGMSAFGRSNMDEFAMGSTTESSAHGKTLNPVDSSRVPGGSSGGSASAVAGGLAIAALGSDTGGSIRQPAAFCGCVGLKPTYGRVSRYGLVAYASSLDQIGPITQNVEDAAILFDAISG 204
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_CAMJJ (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176) GN=gatA PE=3 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 3.956e-19 Identity = 56/163 (34.36%), Postives = 83/163 (50.92%), Query Frame = 2 Query: 248 DGVLIAVKDEIDCSPYPTTGGTKWLHK-VRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733 +GV +A+KD I + T +K L + P DA ++ L+ G G+ NM E G+S + YG NP + ++ L +LG D GGSVR PAA CG VGFKP++GR+ G+ + ++ +G+L VEDA ++Y AI G Sbjct: 49 EGVPVAIKDNISVKGWELTSASKILQGYIAPY--DASAIVNLKANGFSPFGRCNMDEFAMGSSTASSCYGKTLNPLNFERVPGGSSGGSAAAVAGGLALASLGSDTGGSVRQPAAFCGCVGFKPSYGRVSRYGLASYSSSLDQIGVLTQNVEDAAILYDAIAG 209
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_CAMJE (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Campylobacter jejuni GN=gatA PE=3 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 3.956e-19 Identity = 56/163 (34.36%), Postives = 83/163 (50.92%), Query Frame = 2 Query: 248 DGVLIAVKDEIDCSPYPTTGGTKWLHK-VRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733 +GV +A+KD I + T +K L + P DA ++ L+ G G+ NM E G+S + YG NP + ++ L +LG D GGSVR PAA CG VGFKP++GR+ G+ + ++ +G+L VEDA ++Y AI G Sbjct: 49 EGVPVAIKDNISVKGWELTSASKILQGYIAPY--DASAIVNLKANGFSPFGRCNMDEFAMGSSTASSCYGKTLNPLNFERVPGGSSGGSAAAVAGGLALASLGSDTGGSVRQPAAFCGCVGFKPSYGRVSRYGLASYSSSLDQIGVLTQNVEDAAILYDAIAG 209
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_BURS3 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Burkholderia sp. (strain 383) GN=gatA PE=3 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 3.956e-19 Identity = 59/194 (30.41%), Postives = 93/194 (47.94%), Query Frame = 2 Query: 152 MSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733 ++ F++ + + L QA + +G L G+ IA KD + +T G+K L DA V RL+ G + +GKTNM E G+S N +G +NP+D + + L P A G D GGS+R PA+ GV G KPT+GR+ G++ ++ G +A + D ++ A+ G Sbjct: 37 LNAFVHVDADLTLAQAKAADAELARGAG-GALTGLPIAHKDVFVTRGWHSTAGSKMLANYES-PFDATVVARLQAAGMVTLGKTNMDEFAMGSSNENSAFGAVKNPWDTNAVPGGSSGGSSAAVAARLAPAATGTDTGGSIRQPASFAGVTGIKPTYGRVSRYGMIAFASSLDQGGPMAQSASDCALLLNAMAG 228
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_BURP8 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=gatA PE=3 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 3.956e-19 Identity = 60/194 (30.93%), Postives = 91/194 (46.91%), Query Frame = 2 Query: 152 MSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733 ++ F++ + + L QA + G L G+ IA KD + +T G+K L DA V RL G + VGKTNM E G+S N ++G +NP+D + L P A G D GGS+R PA+ G+ G KPT+GR+ G++ ++ G +A T D ++ A+ G Sbjct: 37 LNAFVHVDAQQTLAQAQAADALIAAGNA-GPLTGLPIAHKDVFVTRNWRSTAGSKMLENYTS-PFDATVVDRLAQAGMVCVGKTNMDEFAMGSSNENSYFGPVQNPWDRKAVPGGSSGGSAAAVAARLAPAATGTDTGGSIRQPASFSGITGIKPTYGRVSRYGMIAFASSLDQGGPMAQTAADCALLLNAMGG 228 The following BLAST results are available for this feature:
BLAST of FC878075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC878075 ID=FC878075; Name=FC878075; organism=Citrus clementina; type=EST; length=849bpback to top |