FC878075

Overview
NameFC878075
Unique NameFC878075
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length849
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_CAMJD (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97) GN=gatA PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.029e-19
Identity = 56/163 (34.36%), Postives = 83/163 (50.92%), Query Frame = 2
Query:  248 DGVLIAVKDEIDCSPYPTTGGTKWLHK-VRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            +GV +A+KD I    +  T  +K L   + P   DA  ++ L+  G    G+ NM E   G+S  +  YG   NP +  ++               L   +LG D GGSVR PAA CG VGFKP++GR+   G+   + ++  +G+L   VEDA ++Y AI G
Sbjct:   49 EGVPVAIKDNISVKGWELTSASKILQGYIAPY--DASAIVNLKANGFAPFGRCNMDEFAMGSSTASSCYGKTLNPLNFERVPGGSSGGSAAAVAGGLALASLGSDTGGSVRQPAAFCGCVGFKPSYGRVSRYGLASYSSSLDQIGVLTQNVEDAAILYDAIAG 209          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_BURPS (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Burkholderia pseudomallei GN=gatA PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.029e-19
Identity = 62/194 (31.96%), Postives = 92/194 (47.42%), Query Frame = 2
Query:  152 MSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            ++ F++ + E  L QA  +      GE    L G+ IA KD      + +T G+K L        DA  V RL   G + +GKTNM E   G+S  N  +G  +NP+D S +               L P A G D GGS+R PA+  GV G KPT+GR+   G++    ++   G +A +  D  ++  A+ G
Sbjct:   37 LNAFVHVDAELTLAQAKAADAALANGEA-GPLAGLPIAHKDVFVTRGWRSTAGSKMLANYAS-PFDATVVARLSAAGMVTLGKTNMDEFAMGSSNENSAFGPVKNPWDTSAVPGGSSGGSSAAVAARLAPAATGTDTGGSIRQPASFAGVTGIKPTYGRVSRYGMIAFASSLDQGGPMARSAADCALLLNAMAG 228          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_BURP6 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Burkholderia pseudomallei (strain 668) GN=gatA PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.029e-19
Identity = 62/194 (31.96%), Postives = 92/194 (47.42%), Query Frame = 2
Query:  152 MSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            ++ F++ + E  L QA  +      GE    L G+ IA KD      + +T G+K L        DA  V RL   G + +GKTNM E   G+S  N  +G  +NP+D S +               L P A G D GGS+R PA+  GV G KPT+GR+   G++    ++   G +A +  D  ++  A+ G
Sbjct:   37 LNAFVHVDAELTLAQAKAADAALANGEA-GPLAGLPIAHKDVFVTRGWRSTAGSKMLANYAS-PFDATVVARLSAAGMVTLGKTNMDEFAMGSSNENSAFGPVKNPWDTSAVPGGSSGGSSAAVAAGLAPAATGTDTGGSIRQPASFAGVTGIKPTYGRVSRYGMIAFASSLDQGGPMARSAADCALLLNAMAG 228          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_BURP1 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Burkholderia pseudomallei (strain 1710b) GN=gatA PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.029e-19
Identity = 62/194 (31.96%), Postives = 92/194 (47.42%), Query Frame = 2
Query:  152 MSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            ++ F++ + E  L QA  +      GE    L G+ IA KD      + +T G+K L        DA  V RL   G + +GKTNM E   G+S  N  +G  +NP+D S +               L P A G D GGS+R PA+  GV G KPT+GR+   G++    ++   G +A +  D  ++  A+ G
Sbjct:   37 LNAFVHVDAELTLAQAKAADAALANGEA-GPLAGLPIAHKDVFVTRGWRSTAGSKMLANYAS-PFDATVVARLSAAGMVTLGKTNMDEFAMGSSNENSAFGPVKNPWDTSAVPGGSSGGSSAAVAARLAPAATGTDTGGSIRQPASFAGVTGIKPTYGRVSRYGMIAFASSLDQGGPMARSAADCALLLNAMAG 228          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_BURP0 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Burkholderia pseudomallei (strain 1106a) GN=gatA PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.029e-19
Identity = 62/194 (31.96%), Postives = 92/194 (47.42%), Query Frame = 2
Query:  152 MSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            ++ F++ + E  L QA  +      GE    L G+ IA KD      + +T G+K L        DA  V RL   G + +GKTNM E   G+S  N  +G  +NP+D S +               L P A G D GGS+R PA+  GV G KPT+GR+   G++    ++   G +A +  D  ++  A+ G
Sbjct:   37 LNAFVHVDAELTLAQAKAADAALANGEA-GPLAGLPIAHKDVFVTRGWRSTAGSKMLANYAS-PFDATVVARLSAAGMVTLGKTNMDEFAMGSSNENSAFGPVKNPWDTSAVPGGSSGGSSAAVAARLAPAATGTDTGGSIRQPASFAGVTGIKPTYGRVSRYGMIAFASSLDQGGPMARSAADCALLLNAMAG 228          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_WOLSU (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Wolinella succinogenes GN=gatA PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.956e-19
Identity = 63/186 (33.87%), Postives = 95/186 (51.08%), Query Frame = 2
Query:  182 DILKQATESTLRYKKGEPISVLDG-VLIAVKDEIDCSPYPTTGGTKWLHK-VRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            +I K+ +ES+L    GE    L+G + I VKD I+      T G+K L   V P   +A  + +L   G    G++NM E   G++  +  +G   NP D S++               L   ALG D GGS+R PAA CG VG KPT+GR+   G++    ++  +G +   VEDA +++ AI+G
Sbjct:   21 EIRKKVSESSLNAYVGEIRDSLEGGIPILVKDNINVKGSELTCGSKILEGYVAPY--NATVIEKLHAQGMSAFGRSNMDEFAMGSTTESSAHGKTLNPVDSSRVPGGSSGGSASAVAGGLAIAALGSDTGGSIRQPAAFCGCVGLKPTYGRVSRYGLVAYASSLDQIGPITQNVEDAAILFDAISG 204          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_CAMJJ (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176) GN=gatA PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.956e-19
Identity = 56/163 (34.36%), Postives = 83/163 (50.92%), Query Frame = 2
Query:  248 DGVLIAVKDEIDCSPYPTTGGTKWLHK-VRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            +GV +A+KD I    +  T  +K L   + P   DA  ++ L+  G    G+ NM E   G+S  +  YG   NP +  ++               L   +LG D GGSVR PAA CG VGFKP++GR+   G+   + ++  +G+L   VEDA ++Y AI G
Sbjct:   49 EGVPVAIKDNISVKGWELTSASKILQGYIAPY--DASAIVNLKANGFSPFGRCNMDEFAMGSSTASSCYGKTLNPLNFERVPGGSSGGSAAAVAGGLALASLGSDTGGSVRQPAAFCGCVGFKPSYGRVSRYGLASYSSSLDQIGVLTQNVEDAAILYDAIAG 209          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_CAMJE (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Campylobacter jejuni GN=gatA PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.956e-19
Identity = 56/163 (34.36%), Postives = 83/163 (50.92%), Query Frame = 2
Query:  248 DGVLIAVKDEIDCSPYPTTGGTKWLHK-VRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            +GV +A+KD I    +  T  +K L   + P   DA  ++ L+  G    G+ NM E   G+S  +  YG   NP +  ++               L   +LG D GGSVR PAA CG VGFKP++GR+   G+   + ++  +G+L   VEDA ++Y AI G
Sbjct:   49 EGVPVAIKDNISVKGWELTSASKILQGYIAPY--DASAIVNLKANGFSPFGRCNMDEFAMGSSTASSCYGKTLNPLNFERVPGGSSGGSAAAVAGGLALASLGSDTGGSVRQPAAFCGCVGFKPSYGRVSRYGLASYSSSLDQIGVLTQNVEDAAILYDAIAG 209          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_BURS3 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Burkholderia sp. (strain 383) GN=gatA PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.956e-19
Identity = 59/194 (30.41%), Postives = 93/194 (47.94%), Query Frame = 2
Query:  152 MSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            ++ F++ + +  L QA  +     +G     L G+ IA KD      + +T G+K L        DA  V RL+  G + +GKTNM E   G+S  N  +G  +NP+D + +               L P A G D GGS+R PA+  GV G KPT+GR+   G++    ++   G +A +  D  ++  A+ G
Sbjct:   37 LNAFVHVDADLTLAQAKAADAELARGAG-GALTGLPIAHKDVFVTRGWHSTAGSKMLANYES-PFDATVVARLQAAGMVTLGKTNMDEFAMGSSNENSAFGAVKNPWDTNAVPGGSSGGSSAAVAARLAPAATGTDTGGSIRQPASFAGVTGIKPTYGRVSRYGMIAFASSLDQGGPMAQSASDCALLLNAMAG 228          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_BURP8 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=gatA PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.956e-19
Identity = 60/194 (30.93%), Postives = 91/194 (46.91%), Query Frame = 2
Query:  152 MSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            ++ F++ + +  L QA  +      G     L G+ IA KD      + +T G+K L        DA  V RL   G + VGKTNM E   G+S  N ++G  +NP+D   +               L P A G D GGS+R PA+  G+ G KPT+GR+   G++    ++   G +A T  D  ++  A+ G
Sbjct:   37 LNAFVHVDAQQTLAQAQAADALIAAGNA-GPLTGLPIAHKDVFVTRNWRSTAGSKMLENYTS-PFDATVVDRLAQAGMVCVGKTNMDEFAMGSSNENSYFGPVQNPWDRKAVPGGSSGGSAAAVAARLAPAATGTDTGGSIRQPASFSGITGIKPTYGRVSRYGMIAFASSLDQGGPMAQTAADCALLLNAMGG 228          
The following BLAST results are available for this feature:
BLAST of FC878075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_CAMJD3.029e-1934.36Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_BURPS3.029e-1931.96Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_BURP63.029e-1931.96Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_BURP13.029e-1931.96Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_BURP03.029e-1931.96Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_WOLSU3.956e-1933.87Glutamyl-tRNA(Gln) amidotransferase subunit A OS=W... [more]
GATA_CAMJJ3.956e-1934.36Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_CAMJE3.956e-1934.36Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_BURS33.956e-1930.41Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_BURP83.956e-1930.93Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA35BB11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA35BB11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878075 ID=FC878075; Name=FC878075; organism=Citrus clementina; type=EST; length=849bp
TCTGCCTCTGTCTTCAGAAAAGCAGCCGTTTTTCCATCGCTGGACTGTAT
TAGATTATTCAAAAGCCTACAGTTCCGGAGATATTACTCCTCGTATGGTA
GCAGAGCGGTTTATAACCGCAGTACGTGAGTCTTCAAACCCTCCAATGAA
AATGTCATTCTTCATTAACAACAATGAAGAAGATATTCTAAAGCAAGCTA
CAGAGTCGACTCTTCGGTATAAAAAAGGAGAGCCAATATCGGTTCTAGAT
GGAGTCCTAATTGCAGTCAAGGATGAAATTGATTGTTCTCCTTACCCAAC
TACAGGAGGCACCAAGTGGTTGCATAAAGTTAGACCTTGCACAGGTGATG
CATGCTGCGTTATGCGCCTCAGATTGTGCGGCGCCATACTTGTTGGGAAA
ACTAATATGCATGAGCTCGGGGCTGGAACAAGTGGGATAAATCCTCATTA
TGGGGTCGCTAGAAATCCATACGACCCCAGCAAAATCACTGGGGGTTCTT
CTAGTGGATCAGCAGCAGTGGTGGCTGCAGGATTGTGCCCTGTCGCCCTT
GGTGTTGATGGAGGAGGATCCGTGCGGATGCCTGCAGCTCTCTGTGGTGT
TGTTGGTTTTAAGCCAACTTTCGGGCGCATACCTCTTTCTGGTGTTCTTC
CACTGAACTGGACAGTAGGAATGGTTGGAATTTTAGCAGCCACTGTAGAA
GATGCATTGGTTGTTTATGCAGCTATTAATGGTCCACTTCCTTCCCAACA
GCCCACTGTTTCATTGCCAAAAGTATCGTTCCCACTGCTGAAGTCTGCAA
CATCAATATCAGCCATCAAATTGGGCAAGTATGATGCGTGGTTCAACGA
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