FC878075

Overview
NameFC878075
Unique NameFC878075
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length849
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_BURM1 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=gatA PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.956e-19
Identity = 60/194 (30.93%), Postives = 92/194 (47.42%), Query Frame = 2
Query:  152 MSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            ++ F++   E  L QA  +     +G     L G+ IA KD      + +T G+K L        DA  V RL+  G + +GKTNM E   G+S  N  +G  +NP+D + +               L P A G D GGS+R PA+  GV G KPT+GR+   G++    ++   G +A +  D  ++  A+ G
Sbjct:   37 LNAFVHVEPELTLAQAKAADAELARGAG-GPLTGLPIAHKDVFVTRGWRSTAGSKMLANYES-PFDATVVARLQAAGMVTLGKTNMDEFAMGSSNENSAFGAVKNPWDTNAVPGGSSGGSSAAVAARLAPAATGTDTGGSIRQPASFAGVTGIKPTYGRVSRYGMIAFASSLDQGGPMAQSASDCALLLNAMAG 228          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_BURCJ (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=gatA PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.956e-19
Identity = 59/194 (30.41%), Postives = 93/194 (47.94%), Query Frame = 2
Query:  152 MSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            ++ F++ + +  L QA  +     +G     L G+ IA KD      + +T G+K L        DA  V RL+  G + +GKTNM E   G+S  N  +G  +NP+D + +               L P A G D GGS+R PA+  GV G KPT+GR+   G++    ++   G +A +  D  ++  A+ G
Sbjct:   37 LNAFVHVDADLTLAQAKAADAELARGAG-GALTGLPIAHKDVFVTRGWRSTAGSKMLANYES-PFDATVVARLQAAGMVTLGKTNMDEFAMGSSNENSAFGAVKNPWDTNAVPGGSSGGSSAAVAARLAPAATGTDTGGSIRQPASFAGVTGIKPTYGRVSRYGMIAFASSLDQGGPMAQSASDCALLLNAMAG 228          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_BURCH (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Burkholderia cenocepacia (strain HI2424) GN=gatA PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.956e-19
Identity = 59/194 (30.41%), Postives = 93/194 (47.94%), Query Frame = 2
Query:  152 MSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            ++ F++ + +  L QA  +     +G     L G+ IA KD      + +T G+K L        DA  V RL+  G + +GKTNM E   G+S  N  +G  +NP+D + +               L P A G D GGS+R PA+  GV G KPT+GR+   G++    ++   G +A +  D  ++  A+ G
Sbjct:   37 LNAFVHVDADLTLAQAKAADAELARGAG-GALTGLPIAHKDVFVTRGWRSTAGSKMLANYES-PFDATVVARLQAAGMVTLGKTNMDEFAMGSSNENSAFGAVKNPWDTNAVPGGSSGGSSAAVAARLAPAATGTDTGGSIRQPASFAGVTGIKPTYGRVSRYGMIAFASSLDQGGPMAQSASDCALLLNAMAG 228          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_BURCC (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Burkholderia cenocepacia (strain MC0-3) GN=gatA PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.956e-19
Identity = 59/194 (30.41%), Postives = 93/194 (47.94%), Query Frame = 2
Query:  152 MSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            ++ F++ + +  L QA  +     +G     L G+ IA KD      + +T G+K L        DA  V RL+  G + +GKTNM E   G+S  N  +G  +NP+D + +               L P A G D GGS+R PA+  GV G KPT+GR+   G++    ++   G +A +  D  ++  A+ G
Sbjct:   37 LNAFVHVDADLTLAQAKAADAELARGAG-GALTGLPIAHKDVFVTRGWRSTAGSKMLANYES-PFDATVVARLQAAGMVTLGKTNMDEFAMGSSNENSAFGAVKNPWDTNAVPGGSSGGSSAAVAARLAPAATGTDTGGSIRQPASFAGVTGIKPTYGRVSRYGMIAFASSLDQGGPMAQSASDCALLLNAMAG 228          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_BURCA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Burkholderia cenocepacia (strain AU 1054) GN=gatA PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.956e-19
Identity = 59/194 (30.41%), Postives = 93/194 (47.94%), Query Frame = 2
Query:  152 MSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            ++ F++ + +  L QA  +     +G     L G+ IA KD      + +T G+K L        DA  V RL+  G + +GKTNM E   G+S  N  +G  +NP+D + +               L P A G D GGS+R PA+  GV G KPT+GR+   G++    ++   G +A +  D  ++  A+ G
Sbjct:   37 LNAFVHVDADLTLAQAKAADAELARGAG-GALTGLPIAHKDVFVTRGWRSTAGSKMLANYES-PFDATVVARLQAAGMVTLGKTNMDEFAMGSSNENSAFGAVKNPWDTNAVPGGSSGGSSAAVAARLAPAATGTDTGGSIRQPASFAGVTGIKPTYGRVSRYGMIAFASSLDQGGPMAQSASDCALLLNAMAG 228          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_ANAPZ (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Anaplasma phagocytophilum (strain HZ) GN=gatA PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.956e-19
Identity = 68/234 (29.06%), Postives = 108/234 (46.15%), Query Frame = 2
Query:   44 TVLDYSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNP----YDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            ++L+        + +P  + E +I  +   +     ++ F+   ++  L+QA +      +GE IS L G+ I VKD    +   TT  +  L    P + ++     L    A ++GK NM E   G++     +G  +NP    Y    I               LC  A+G D GGSVR PAALCG+VG KPT+GR    G++    ++   G+L  TVEDA ++  A+ G
Sbjct:    9 SILEAHNCLKRKEFSPTELVEAYIDEMENEN-----LNAFVTKTQDIALEQARKVENLLLQGEKISPLAGMPIGVKDLFCTAGVRTTACSDILKNFVP-SYESTISQNLWNNNACMMGKLNMDEFAMGSASSYSCFGPVKNPWKGPYGEDLIPGGSSGGSSAAVAGRLCIAAIGSDTGGSVRQPAALCGIVGAKPTYGRCSRWGMIAFASSLDQAGVLTRTVEDAAIMLQAMCG 236          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_MYCPN (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Mycoplasma pneumoniae GN=gatA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.167e-19
Identity = 59/178 (33.15%), Postives = 89/178 (50.00%), Query Frame = 2
Query:  185 ILKQATE-STLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVV 715
            +LK   E +  +  K    S L+ +   +KD I      TTGG+++L    P    A     L   GA+LVGK N+ E G G +G++  +G   +P++ + I               + P ++G D G SVR PA++C +VGFKPT+G I  +GV P   ++  VGI A  V D  +V
Sbjct:   39 LLKNTVEWAQAQAPKNRSKSPLNNIPFVLKDNIATKGIVTTGGSRFLEDYIP-PFSATVFELLNNSGALLVGKANLDEFGLGGTGLHSGFGFVHHPWNETLIPGGSSSGSAYAVARGIVPFSIGTDTGDSVRRPASICNIVGFKPTYGLISRNGVYPYAPSLDHVGIFARYVYDVALV 215          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_LACSS (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Lactobacillus sakei subsp. sakei (strain 23K) GN=gatA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.167e-19
Identity = 56/165 (33.94%), Postives = 83/165 (50.30%), Query Frame = 2
Query:  239 SVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            ++L G+ I +KD +      TT  +K L   +P   DA  V +L+   AI++GKTN+ E   G+S     +   +NP+D  K+                   ALG D GGS+R PAA  G+VG KPT+GR+   G +    ++  VG+ + TV D   V  AI+G
Sbjct:   67 NLLAGMPIGIKDNLLTDGVTTTAASKMLANFKPVF-DATVVEKLKAKKAIMIGKTNLDEFAMGSSTETSAFKKTKNPWDLDKVPGGSSGGSAAAVAAGEVVAALGTDTGGSIRQPAAFNGIVGIKPTYGRVSRWGAIAFASSLDQVGVFSRTVADNATVLQAISG 230          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_EHRRG (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Ehrlichia ruminantium (strain Gardel) GN=gatA PE=3 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 5.167e-19
Identity = 64/200 (32.00%), Postives = 96/200 (48.00%), Query Frame = 2
Query:  149 KMSFFINNNEEDILKQATEST-LRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSK----ITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            +++ FI    E  L  A ++  +   + + I+ L G+ + +KD        TT  +  L    P   D+  V RL   GA+++GK NM E   G+S  N  +G   NP+  +     +               LC  ALG D GGSVR PAA CG+VG KPT+GR   SG++    ++   G+L  TV+DA ++   I G
Sbjct:   38 QLNAFITKTPEVALNAARKADHILTHEQDKITSLTGIPVGIKDLFCTKNIKTTACSNILRNFTP-QYDSTVVKRLIDDGAVMLGKLNMDEFAMGSSNSNSCFGPVENPWTRADGVKVVPGGSSGGSSAAVAGFLCAGALGSDTGGSVRQPAAFCGIVGLKPTYGRCSRSGMIAFASSLDQAGVLTRTVKDAALMLQPICG 236          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_CAMFF (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Campylobacter fetus subsp. fetus (strain 82-40) GN=gatA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.167e-19
Identity = 61/177 (34.46%), Postives = 87/177 (49.15%), Query Frame = 2
Query:  251 GVLIAVKDEIDCSPYPTTGGTKWLHK-VRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVS 778
            GV IA+KD I    +  T  +K L   V P    A  V +L   G    G+TNM E   G++  +  YG   NP D +++               L   ALG D GGS+R PAA CG VGFKPT+GR+   G+   + ++  +G +  +VEDA ++Y  I G  P    + +L  +S
Sbjct:   50 GVPIAIKDNIQVKNWSITSCSKILQGYVAPY--HATVVEKLLKAGLAPFGRTNMDEFAMGSTTESSFYGKTLNPLDHTRVPGGSSGGSAAAVSAGLAIAALGSDTGGSIRQPAAFCGCVGFKPTYGRVSRYGLGAYSSSLDQIGPITRSVEDAALLYDIIAGHDPKDSTSSNLENIS 224          
The following BLAST results are available for this feature:
BLAST of FC878075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_BURM13.956e-1930.93Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_BURCJ3.956e-1930.41Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_BURCH3.956e-1930.41Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_BURCC3.956e-1930.41Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_BURCA3.956e-1930.41Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_ANAPZ3.956e-1929.06Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_MYCPN5.167e-1933.15Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_LACSS5.167e-1933.94Glutamyl-tRNA(Gln) amidotransferase subunit A OS=L... [more]
GATA_EHRRG5.167e-1932.00Glutamyl-tRNA(Gln) amidotransferase subunit A OS=E... [more]
GATA_CAMFF5.167e-1934.46Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA35BB11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA35BB11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878075 ID=FC878075; Name=FC878075; organism=Citrus clementina; type=EST; length=849bp
TCTGCCTCTGTCTTCAGAAAAGCAGCCGTTTTTCCATCGCTGGACTGTAT
TAGATTATTCAAAAGCCTACAGTTCCGGAGATATTACTCCTCGTATGGTA
GCAGAGCGGTTTATAACCGCAGTACGTGAGTCTTCAAACCCTCCAATGAA
AATGTCATTCTTCATTAACAACAATGAAGAAGATATTCTAAAGCAAGCTA
CAGAGTCGACTCTTCGGTATAAAAAAGGAGAGCCAATATCGGTTCTAGAT
GGAGTCCTAATTGCAGTCAAGGATGAAATTGATTGTTCTCCTTACCCAAC
TACAGGAGGCACCAAGTGGTTGCATAAAGTTAGACCTTGCACAGGTGATG
CATGCTGCGTTATGCGCCTCAGATTGTGCGGCGCCATACTTGTTGGGAAA
ACTAATATGCATGAGCTCGGGGCTGGAACAAGTGGGATAAATCCTCATTA
TGGGGTCGCTAGAAATCCATACGACCCCAGCAAAATCACTGGGGGTTCTT
CTAGTGGATCAGCAGCAGTGGTGGCTGCAGGATTGTGCCCTGTCGCCCTT
GGTGTTGATGGAGGAGGATCCGTGCGGATGCCTGCAGCTCTCTGTGGTGT
TGTTGGTTTTAAGCCAACTTTCGGGCGCATACCTCTTTCTGGTGTTCTTC
CACTGAACTGGACAGTAGGAATGGTTGGAATTTTAGCAGCCACTGTAGAA
GATGCATTGGTTGTTTATGCAGCTATTAATGGTCCACTTCCTTCCCAACA
GCCCACTGTTTCATTGCCAAAAGTATCGTTCCCACTGCTGAAGTCTGCAA
CATCAATATCAGCCATCAAATTGGGCAAGTATGATGCGTGGTTCAACGA
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