FC878075

Overview
NameFC878075
Unique NameFC878075
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length849
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_CAMC5 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Campylobacter curvus (strain 525.92) GN=gatA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.167e-19
Identity = 59/171 (34.50%), Postives = 87/171 (50.88%), Query Frame = 2
Query:  227 GEPISVL-DGVLIAVKDEIDCSPYPTTGGTKWLHK-VRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            G P+S L +GV IA+KD I    +  T G+K L   + P   +A  + +L        G+TNM E   G++  +  YG   NP + + +               +   ALG D GGS+R PAA CG VGFKPT+GR+   G+   + ++  +G +A  VEDA ++Y  I G
Sbjct:   41 GLPLSKLGEGVPIAIKDNIQIKGWSVTSGSKILQGYIAPY--NATAIEKLLARNLAAFGRTNMDEFAMGSTTESSFYGHTLNPLNHAHVPGGSSGGSAAAVAGGIAIAALGSDTGGSIRQPAAFCGCVGFKPTYGRVSRYGLAAYSSSLDQIGPIAQNVEDAAILYDIIAG 209          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_ZYMMO (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Zymomonas mobilis GN=gatA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.748e-19
Identity = 73/265 (27.55%), Postives = 119/265 (44.91%), Query Frame = 2
Query:   47 VLDYSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPY-----DPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSISAIKLG 826
            V D     + GD + + VAE F+TA  E+     K++ FI    +  LKQA ++      G+ +  L GV + +KD    + Y TT  +K +    P   ++    +L   GA +VGK N+ +   G+S     +G   +P+     D +                 L P A G D GGS+R PA+  G+ G KPT+GR    GV+    ++   G +A +V+D   +   + G  P    +V +   ++  L S + I   K+G
Sbjct:    9 VTDLRDGIAKGDFSAKEVAESFLTATNEAE----KLNAFITLTPDHALKQAEKADKDRASGQ-LKPLSGVPLGIKDLFCTNGYRTTAASKIIDNFVP-PYESTITEKLFSAGAGMVGKLNLDQFAMGSSNETSAFGNVISPWRQKGDDTALTPGGSSGGSAAAVAAKLVPAATGTDTGGSIRQPASFTGITGLKPTYGRCSRYGVIAFASSLDQAGPMAHSVKDCAALLEVMAGFDPKDSTSVDVMVPNWEKLLS-SDIRGKKIG 266          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_PSEF5 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=gatA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.748e-19
Identity = 69/236 (29.24%), Postives = 111/236 (47.03%), Query Frame = 2
Query:   62 KAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLP 769
            K +SS ++T  ++A       R +   P +++ FI+  ++  L QA  +  R   GE  ++L G  IA KD        T+ G+K L   +    DA  V +L   GA+ +GKTNM E   G++  +  YG  +NP++   +               L P A   D GGS+R PAA   + G KPT+GR+   G++    ++   G LA T ED  ++   + G  P+   ++  P
Sbjct:   16 KKFSSVELTQTLLA-------RIAQLDP-QINSFISLTQDLALSQAKAADERRANGESGALL-GAPIAHKDLFCTQGIRTSCGSKMLDNFK-APYDATVVAKLAAAGAVTLGKTNMDEFAMGSANESSWYGAVKNPWNLEHVPGGSSGGSAAAVAARLLPAATATDTGGSIRQPAAFTNLTGLKPTYGRVSRWGMIAYASSLDQGGPLARTAEDCAILLQGMAGFDPNDSTSIDEP 241          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_PELPD (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Pelobacter propionicus (strain DSM 2379) GN=gatA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.748e-19
Identity = 66/207 (31.88%), Postives = 95/207 (45.89%), Query Frame = 2
Query:  149 KMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLP 769
            +++ FI    E  L +A  +  R   GE   VL G+ +AVKD        TT G++ L+   P    A    +L+  G +L+GK N  E   G+S  +   G  RNP++   I                  V LG D GGS+R PA+ CG VG KPT+GR+   GV+    ++  VG L   V D  ++  A+ G  P    +V  P
Sbjct:   39 RINAFITVTPERALAEAEAADRRIAAGEA-DVLTGIPLAVKDIFLTEGTLTTCGSRILNNFIP-PYSATSFEKLKQRGMVLLGKLNQDEFAMGSSNESSASGPCRNPWNTDCIPGGSSGGSAAAIAARQATVTLGTDTGGSIRQPASHCGCVGLKPTYGRVSRYGVIAYASSLDQVGPLTRDVTDCAIMLGALAGHDPKDSTSVDRP 243          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_LACCB (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Lactobacillus casei (strain BL23) GN=gatA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.748e-19
Identity = 61/179 (34.08%), Postives = 84/179 (46.93%), Query Frame = 2
Query:  245 LDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSF 781
            L GV IA+KD I      TT  +K L    P   DA  + +L   GAI VGKTNM E   G+S  N  +   +N +D +++                   ALG D GGS+R PAA  G+VG KPT+GR+   G++  + ++  +G L   V+DA  +   I G       T   P   F
Sbjct:   69 LAGVPIAIKDNIVTKGVVTTAASKMLANFNPIY-DATVMQKLDAAGAINVGKTNMDEFAMGSSTENSAFKTTKNAWDHTRVPGGSSGGSAAAVAAGEVIAALGSDTGGSIRQPAAFNGIVGVKPTYGRVSRWGLIAFSSSLDQIGTLTRHVKDAAQLLNVIAGHDERDSTTADTPVPDF 246          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_LACC3 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Lactobacillus casei (strain ATCC 334) GN=gatA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.748e-19
Identity = 61/179 (34.08%), Postives = 84/179 (46.93%), Query Frame = 2
Query:  245 LDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSF 781
            L GV IA+KD I      TT  +K L    P   DA  + +L   GAI VGKTNM E   G+S  N  +   +N +D +++                   ALG D GGS+R PAA  G+VG KPT+GR+   G++  + ++  +G L   V+DA  +   I G       T   P   F
Sbjct:   69 LAGVPIAIKDNIVTKGVVTTAASKILANFNPIY-DATVIQKLDAAGAINVGKTNMDEFAMGSSTENSAFKTTKNAWDHTRVPGGSSGGSAAAVAAGEVIAALGSDTGGSIRQPAAFNGIVGVKPTYGRVSRWGLIAFSSSLDQIGTLTRHVKDAAQLLNVIAGHDERDSTTADTPVPDF 246          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_DESRM (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Desulfotomaculum reducens (strain MI-1) GN=gatA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.748e-19
Identity = 64/226 (28.32%), Postives = 102/226 (45.13%), Query Frame = 2
Query:  149 KMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSISAIKLG 826
            K+  ++    E    +A +   +   GE I  L G+ IA+KD +      TT  +K L+   P    A  V ++     ++VGKTNM E   G+S  N  + +  NP+D  ++                  ++LG D GGS+R PAALCGVVG KPT+G +   G++    ++  +G     V D   V   I G  P    + +L +  +    +   I  +K+G
Sbjct:   39 KVKSYLTLTREQAEIKARQVDQKIAAGESIGPLAGIPIAIKDNMCTQGIRTTCASKILYNFVP-PYSATSVEKVYTADMVMVGKTNMDEFAMGSSTENSGFHLTHNPWDLDRVPGGSSGGSAAAVAAGEAIISLGSDTGGSIRQPAALCGVVGMKPTYGSVSRYGLVAYASSLDQIGPFTRDVTDMAHVLNVICGHDPMDSTSANLKQTDYTQFLT-NDIKGMKIG 262          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_CORDI (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Corynebacterium diphtheriae GN=gatA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.748e-19
Identity = 69/222 (31.08%), Postives = 102/222 (45.95%), Query Frame = 2
Query:   74 SGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGE-PISVLDGVLIAVKDEIDCSPYPTTGGTKWLHK-VRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            S ++T R V +  +  + +       +  F++   E+ L  A        KGE P S L GV +A+KD    +  PTT  +K L   V P   DA    ++R  G  ++GKTNM E   G+S  N  YG   NP+D  +                  P+ +G D GGS+R PAAL   VG KPT+G +   G++    ++   G  A TV D  +++  I G
Sbjct:   25 SREVTSREVTQAHLDRINDVDGT---LHAFLHVGVEEALAAADAVDESLDKGEAPASALAGVPLALKDVFVTTDAPTTCASKMLEGYVAPY--DATVTKKIREAGIPILGKTNMDEFAMGSSTENSAYGPTLNPWDIERTPGGSGGGTSAALASGEAPLGIGTDTGGSIRQPAALTNTVGVKPTYGTVSRYGLVACASSLDQGGPTARTVLDTALLHEVIAG 241          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_CAMC1 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Campylobacter concisus (strain 13826) GN=gatA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.748e-19
Identity = 60/178 (33.71%), Postives = 87/178 (48.88%), Query Frame = 2
Query:  248 DGVLIAVKDEIDCSPYPTTGGTKWLHK-VRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVS 778
            +GV IA+KD I    +  T  +K L   V P   +A  + +L        G+TNM E   G++  +  YG   NP + + +               L   ALG D GGS+R PAA CG VG KPT+GR+   G+   + ++  +G +A  VEDA ++Y AI G  P    +  +P VS
Sbjct:   49 EGVPIAIKDNIQVKGWSVTSASKILQGYVAPY--NATVIEKLLSKNLAPFGRTNMDEFAMGSTTESSFYGKTLNPLNHAHVPGGSSGGSAAAVAAGLAVAALGSDTGGSIRQPAAFCGCVGLKPTYGRVSRYGLGAYSSSLDQIGPIAQNVEDAAILYDAIAGHDPKDSTSADVPFVS 224          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_BACLD (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=gatA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.748e-19
Identity = 64/209 (30.62%), Postives = 96/209 (45.93%), Query Frame = 2
Query:  149 KMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING--PLPSQQPTVSLP 769
            K+  F+  +EE     A E        +   +L G+ I +KD I      TT  +K L    P   DA  V RL    A+ +GK NM E   G+S  N  +   +NP++   +                 P +LG D GGS+R PA+ CGVVG KPT+GR+   G++    ++  +G +  +VED   +  AI+G   + S    V +P
Sbjct:   39 KVQAFLQLDEEKARAYAKELDEALDTRDEHGLLFGMPIGIKDNIVTKDLRTTCASKILENFDPIY-DATVVERLHEAEAVTIGKLNMDEFAMGSSTENSGFKKTKNPWNLETVPGGSSGGSAAAVAAGEVPFSLGSDTGGSIRQPASFCGVVGLKPTYGRVSRYGLVAFASSLDQIGPITRSVEDNAYLLQAISGVDKMDSTSANVDVP 246          
The following BLAST results are available for this feature:
BLAST of FC878075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_CAMC55.167e-1934.50Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_ZYMMO6.748e-1927.55Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Z... [more]
GATA_PSEF56.748e-1929.24Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]
GATA_PELPD6.748e-1931.88Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]
GATA_LACCB6.748e-1934.08Glutamyl-tRNA(Gln) amidotransferase subunit A OS=L... [more]
GATA_LACC36.748e-1934.08Glutamyl-tRNA(Gln) amidotransferase subunit A OS=L... [more]
GATA_DESRM6.748e-1928.32Glutamyl-tRNA(Gln) amidotransferase subunit A OS=D... [more]
GATA_CORDI6.748e-1931.08Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_CAMC16.748e-1933.71Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_BACLD6.748e-1930.62Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA35BB11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA35BB11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878075 ID=FC878075; Name=FC878075; organism=Citrus clementina; type=EST; length=849bp
TCTGCCTCTGTCTTCAGAAAAGCAGCCGTTTTTCCATCGCTGGACTGTAT
TAGATTATTCAAAAGCCTACAGTTCCGGAGATATTACTCCTCGTATGGTA
GCAGAGCGGTTTATAACCGCAGTACGTGAGTCTTCAAACCCTCCAATGAA
AATGTCATTCTTCATTAACAACAATGAAGAAGATATTCTAAAGCAAGCTA
CAGAGTCGACTCTTCGGTATAAAAAAGGAGAGCCAATATCGGTTCTAGAT
GGAGTCCTAATTGCAGTCAAGGATGAAATTGATTGTTCTCCTTACCCAAC
TACAGGAGGCACCAAGTGGTTGCATAAAGTTAGACCTTGCACAGGTGATG
CATGCTGCGTTATGCGCCTCAGATTGTGCGGCGCCATACTTGTTGGGAAA
ACTAATATGCATGAGCTCGGGGCTGGAACAAGTGGGATAAATCCTCATTA
TGGGGTCGCTAGAAATCCATACGACCCCAGCAAAATCACTGGGGGTTCTT
CTAGTGGATCAGCAGCAGTGGTGGCTGCAGGATTGTGCCCTGTCGCCCTT
GGTGTTGATGGAGGAGGATCCGTGCGGATGCCTGCAGCTCTCTGTGGTGT
TGTTGGTTTTAAGCCAACTTTCGGGCGCATACCTCTTTCTGGTGTTCTTC
CACTGAACTGGACAGTAGGAATGGTTGGAATTTTAGCAGCCACTGTAGAA
GATGCATTGGTTGTTTATGCAGCTATTAATGGTCCACTTCCTTCCCAACA
GCCCACTGTTTCATTGCCAAAAGTATCGTTCCCACTGCTGAAGTCTGCAA
CATCAATATCAGCCATCAAATTGGGCAAGTATGATGCGTGGTTCAACGA
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