FC878075

Overview
NameFC878075
Unique NameFC878075
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length849
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_MORCA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Moraxella catarrhalis GN=gatA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 8.813e-19
Identity = 70/276 (25.36%), Postives = 122/276 (44.20%), Query Frame = 2
Query:   35 HRWTVLDYSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHK-VRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSF--PLLKSATS---ISAIKLGKYDAWF 844
            H  +V + +    +   +   + E F   +        +++ FI  + ++ L QA  +     KG+   +L GV +A KD +      TT G+K L+  V P   DA  V  +   G + +GK NM E   G+   + ++G   NP+D  ++                 PVA G D GGS+R PA+ CG+ G KPT+GR+   G++    ++   G    +  D   + A + G  P    +++ P   +   +L + T    ++  K+G   A+F
Sbjct:    5 HHLSVHELADGLKNKQFSSHELVEHFANRINRLDG---QINSFITKDFDNALAQAKLADKLRAKGDNRPLL-GVPMAHKDNLCTKGVLTTAGSKMLYNFVSPY--DATVVDSIANSGFVSLGKLNMDEFAMGSDNESSYFGAVHNPWDVQRVPGGSSGGSAAAVAAGFVPVATGSDTGGSIRQPASFCGITGIKPTYGRVSRYGMIAYASSLDQAGTFGKSALDCAYLLAPMAGYDPKDATSINRPSEDYVADILATKTDGKPLAGKKIGVAKAYF 274          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_METJA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methanocaldococcus jannaschii GN=gatA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 8.813e-19
Identity = 56/164 (34.15%), Postives = 84/164 (51.22%), Query Frame = 2
Query:  245 LDGVLIAVKDEIDCSPYPTTGGTKWLHK-VRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            L G +I VK  I+   Y  +  +K L   + P   DA  + +++  G +++G  NM E   G+SG   ++G  +NP    +I               LC +ALG D GGS+R PA+ CGVVGFKP++G +   G+  L  +   +G L  T EDAL++   I G
Sbjct:   49 LYGKIIVVKANINVEGYTISCASKTLENYIAPY--DATVIEKIKENGGLIIGIANMDEFACGSSGETSYFGPTKNPRAKDRIPGGSSSGSAAAVSADLCDMALGSDTGGSIRNPASHCGVVGFKPSYGVVSRYGLCDLAMSFDQIGPLTKTAEDALLLTNIIKG 210          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_GEOLS (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=gatA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 8.813e-19
Identity = 65/204 (31.86%), Postives = 92/204 (45.10%), Query Frame = 2
Query:  161 FINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHK-VRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLP 769
            FI   +E  L  A  +  R   G   + L G+ +A+KD        TT  +K L   + P   DA    R++  GA+L+GK N  E   G+S  N  +G  RNP++   I                    LG D GGS+R PA+ CG VG KPT+GR+   GV+    ++  VG +   V DA ++   I G  P    +V  P
Sbjct:   43 FITVTKEQALLDAAAADQRIAAGN-CAPLTGIPVALKDIFLTEGVRTTSASKMLDNFIAPY--DATAWTRMKSQGAVLLGKLNQDEFAMGSSCENSAFGPTRNPWNKDHIPGGSSGGSAAAIAAQQAVATLGTDTGGSIRQPASHCGCVGLKPTYGRVSRYGVIAYASSLDQVGPMTRDVTDAALLLGVIAGYDPKDSTSVDCP 243          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_BURMS (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Burkholderia mallei (strain SAVP1) GN=gatA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 8.813e-19
Identity = 61/194 (31.44%), Postives = 91/194 (46.91%), Query Frame = 2
Query:  152 MSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            ++ F++ + E  L QA  +      GE    L G+ I  KD      + +T G+K L        DA  V RL   G + +GKTNM E   G+S  N  +G  +NP+D S +               L P A G D GGS+R PA+  GV G KPT+GR+   G++    ++   G +A +  D  ++  A+ G
Sbjct:   37 LNAFVHVDAELTLAQAKAADAALANGEA-GPLAGLPIVHKDVFVTRGWRSTAGSKMLANYAS-PFDATVVARLSAAGMVTLGKTNMDEFAMGSSNENSAFGPVKNPWDTSAVPGGSSGGSSAAVAARLAPAATGTDTGGSIRQPASFAGVTGIKPTYGRVSRYGMIAFASSLDQGGPMARSAADCALLLNAMAG 228          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_BURMA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Burkholderia mallei GN=gatA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 8.813e-19
Identity = 61/194 (31.44%), Postives = 91/194 (46.91%), Query Frame = 2
Query:  152 MSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            ++ F++ + E  L QA  +      GE    L G+ I  KD      + +T G+K L        DA  V RL   G + +GKTNM E   G+S  N  +G  +NP+D S +               L P A G D GGS+R PA+  GV G KPT+GR+   G++    ++   G +A +  D  ++  A+ G
Sbjct:   37 LNAFVHVDAELTLAQAKAADAALANGEA-GPLAGLPIVHKDVFVTRGWRSTAGSKMLANYAS-PFDATVVARLSAAGMVTLGKTNMDEFAMGSSNENSAFGPVKNPWDTSAVPGGSSGGSSAAVAARLAPAATGTDTGGSIRQPASFAGVTGIKPTYGRVSRYGMIAFASSLDQGGPMARSAADCALLLNAMAG 228          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_BURM9 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Burkholderia mallei (strain NCTC 10229) GN=gatA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 8.813e-19
Identity = 61/194 (31.44%), Postives = 91/194 (46.91%), Query Frame = 2
Query:  152 MSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            ++ F++ + E  L QA  +      GE    L G+ I  KD      + +T G+K L        DA  V RL   G + +GKTNM E   G+S  N  +G  +NP+D S +               L P A G D GGS+R PA+  GV G KPT+GR+   G++    ++   G +A +  D  ++  A+ G
Sbjct:   37 LNAFVHVDAELTLAQAKAADAALANGEA-GPLAGLPIVHKDVFVTRGWRSTAGSKMLANYAS-PFDATVVARLSAAGMVTLGKTNMDEFAMGSSNENSAFGPVKNPWDTSAVPGGSSGGSSAAVAARLAPAATGTDTGGSIRQPASFAGVTGIKPTYGRVSRYGMIAFASSLDQGGPMARSAADCALLLNAMAG 228          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_BURM7 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Burkholderia mallei (strain NCTC 10247) GN=gatA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 8.813e-19
Identity = 61/194 (31.44%), Postives = 91/194 (46.91%), Query Frame = 2
Query:  152 MSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            ++ F++ + E  L QA  +      GE    L G+ I  KD      + +T G+K L        DA  V RL   G + +GKTNM E   G+S  N  +G  +NP+D S +               L P A G D GGS+R PA+  GV G KPT+GR+   G++    ++   G +A +  D  ++  A+ G
Sbjct:   37 LNAFVHVDAELTLAQAKAADAALANGEA-GPLAGLPIVHKDVFVTRGWRSTAGSKMLANYAS-PFDATVVARLSAAGMVTLGKTNMDEFAMGSSNENSAFGPVKNPWDTSAVPGGSSGGSSAAVAARLAPAATGTDTGGSIRQPASFAGVTGIKPTYGRVSRYGMIAFASSLDQGGPMARSAADCALLLNAMAG 228          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: DUR1_YEAST (Urea amidolyase OS=Saccharomyces cerevisiae GN=DUR1,2 PE=1 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 8.813e-19
Identity = 77/269 (28.62%), Postives = 123/269 (45.72%), Query Frame = 2
Query:   41 WTVLDYSKAYSSGDITPRMVAERFITAVRESSN-PPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSISAIKLGKYDAWF 844
            W++ D+   + S      +   R + ++ +S N  P+  ++    ++E++L Q     L+ ++ +    L GV IAVKD ID    PTT            + D+  V  LR  GAI+VGKTN+ +   G  G    YG     +    ++              + P+ALG D  GS R+PAAL  ++G KPT G     GV+P   ++  V I A  + DA   +  +  P P      S P VS PL K +++++ I + K   W+
Sbjct:   15 WSIQDWIDFHKSSSSQASL---RLLESLLDSQNVAPVDNAWISLISKENLLHQF--QILKSRENKETLPLYGVPIAVKDNIDVRGLPTTAACPSF--AYEPSKDSKVVELLRNAGAIIVGKTNLDQFATGLVGTRSPYGKTPCAFSKEHVSGGSSAGSASVVARGIVPIALGTDTAGSGRVPAALNNLIGLKPTKGVFSCQGVVPACKSLDCVSIFALNLSDAERCFRIMCQPDPDND-EYSRPYVSNPLKKFSSNVT-IAIPKNIPWY 274          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_STREM (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Streptococcus equi subsp. zooepidemicus (strain MGCS10565) GN=gatA PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.151e-18
Identity = 63/191 (32.98%), Postives = 91/191 (47.64%), Query Frame = 2
Query:  161 FINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            FI   EE  LKQA  + L  K  +P +V+ G+ +AVKD I      TT  +K L+   P   DA  V        I++GKTNM E   G S    ++   +N +D S++                  ++LG D GGS+R PAA  GVVG KPT+G +   G++    ++  +G  A TV +   +   I G
Sbjct:   43 FITIAEEAALKQA--AALDAKGIDPDNVMSGIPLAVKDNISTKGILTTAASKMLYNYEPIF-DATAVANAYDKDMIIIGKTNMDEFAMGGSTETSYFKKTKNAWDRSRVPGGSSGGSATAVASGQVRLSLGSDTGGSIRQPAAFNGVVGLKPTYGAVSRYGLIAFGSSLDQIGPFAPTVRENAQLLTVIAG 230          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_MYCPA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Mycobacterium paratuberculosis GN=gatA PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.151e-18
Identity = 59/165 (35.76%), Postives = 82/165 (49.70%), Query Frame = 2
Query:  239 SVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            S L GV +A+KD       PTT G+K L   R    DA    +LR  G  ++GKTNM E   G+S  N  YG  RNP++  ++                 P+A+G D GGS+R PAAL   VG KPT+G +   G++    ++   G  A TV D  +++  I G
Sbjct:   71 SPLAGVPLALKDVFTTVDMPTTCGSKILQGWRS-PYDATVTTKLRAAGIPILGKTNMDEFAMGSSTENSAYGPTRNPWNVERVPGGSGGGSAAALAAFQAPLAIGSDTGGSIRQPAALTATVGVKPTYGTVSRYGLVACASSLDQGGPCARTVLDTALLHQVIAG 234          
The following BLAST results are available for this feature:
BLAST of FC878075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_MORCA8.813e-1925.36Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_METJA8.813e-1934.15Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_GEOLS8.813e-1931.86Glutamyl-tRNA(Gln) amidotransferase subunit A OS=G... [more]
GATA_BURMS8.813e-1931.44Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_BURMA8.813e-1931.44Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_BURM98.813e-1931.44Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_BURM78.813e-1931.44Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
DUR1_YEAST8.813e-1928.62Urea amidolyase OS=Saccharomyces cerevisiae GN=DUR... [more]
GATA_STREM1.151e-1832.98Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_MYCPA1.151e-1835.76Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA35BB11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA35BB11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878075 ID=FC878075; Name=FC878075; organism=Citrus clementina; type=EST; length=849bp
TCTGCCTCTGTCTTCAGAAAAGCAGCCGTTTTTCCATCGCTGGACTGTAT
TAGATTATTCAAAAGCCTACAGTTCCGGAGATATTACTCCTCGTATGGTA
GCAGAGCGGTTTATAACCGCAGTACGTGAGTCTTCAAACCCTCCAATGAA
AATGTCATTCTTCATTAACAACAATGAAGAAGATATTCTAAAGCAAGCTA
CAGAGTCGACTCTTCGGTATAAAAAAGGAGAGCCAATATCGGTTCTAGAT
GGAGTCCTAATTGCAGTCAAGGATGAAATTGATTGTTCTCCTTACCCAAC
TACAGGAGGCACCAAGTGGTTGCATAAAGTTAGACCTTGCACAGGTGATG
CATGCTGCGTTATGCGCCTCAGATTGTGCGGCGCCATACTTGTTGGGAAA
ACTAATATGCATGAGCTCGGGGCTGGAACAAGTGGGATAAATCCTCATTA
TGGGGTCGCTAGAAATCCATACGACCCCAGCAAAATCACTGGGGGTTCTT
CTAGTGGATCAGCAGCAGTGGTGGCTGCAGGATTGTGCCCTGTCGCCCTT
GGTGTTGATGGAGGAGGATCCGTGCGGATGCCTGCAGCTCTCTGTGGTGT
TGTTGGTTTTAAGCCAACTTTCGGGCGCATACCTCTTTCTGGTGTTCTTC
CACTGAACTGGACAGTAGGAATGGTTGGAATTTTAGCAGCCACTGTAGAA
GATGCATTGGTTGTTTATGCAGCTATTAATGGTCCACTTCCTTCCCAACA
GCCCACTGTTTCATTGCCAAAAGTATCGTTCCCACTGCTGAAGTCTGCAA
CATCAATATCAGCCATCAAATTGGGCAAGTATGATGCGTGGTTCAACGA
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