FC878075

Overview
NameFC878075
Unique NameFC878075
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length849
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_MYCA1 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Mycobacterium avium (strain 104) GN=gatA PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.151e-18
Identity = 59/165 (35.76%), Postives = 82/165 (49.70%), Query Frame = 2
Query:  239 SVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            S L GV +A+KD       PTT G+K L   R    DA    +LR  G  ++GKTNM E   G+S  N  YG  RNP++  ++                 P+A+G D GGS+R PAAL   VG KPT+G +   G++    ++   G  A TV D  +++  I G
Sbjct:   71 SPLAGVPLALKDVFTTVDMPTTCGSKILQGWRS-PYDATVTTKLRAAGIPILGKTNMDEFAMGSSTENSAYGPTRNPWNVERVPGGSGGGSAAALAAFQAPLAIGSDTGGSIRQPAALTATVGVKPTYGTVSRYGLVACASSLDQGGPCARTVLDTALLHQVIAG 234          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_MAGSM (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Magnetococcus sp. (strain MC-1) GN=gatA PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.151e-18
Identity = 60/230 (26.09%), Postives = 103/230 (44.78%), Query Frame = 2
Query:  137 NPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSISAIKLG 826
            NP +     ++  +     QA ++ +    G P++   G+ IA KD  + +   TT  ++ L    P   DA     LR  GA+++GKTN+ E   G+S    ++G +RNP+D  +                +   A G D GGS+R PA+L  + G KPT+GR    G++    ++   G +  T EDA ++   +    P    ++  P   F    +   +  +K+G
Sbjct:   37 NPTINAFVTVDAEKALAAAQAADARIAAGNGAPLT---GIPIAHKDIFNTTDMRTTCSSRMLENFIP-PFDATITTHLRQAGAVILGKTNLDEFAMGSSTETSYFGASRNPWDTQRTPGGSSGGSSAAIAANMAICATGTDTGGSIRQPASLTNLTGLKPTYGRCSRYGIIAFASSLDQAGPMTRTAEDAAMLLNVMVSYDPKDSTSIQSPAPDFTQALTG-DVKGLKIG 261          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_ENTFA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Enterococcus faecalis GN=gatA PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.503e-18
Identity = 65/221 (29.41%), Postives = 105/221 (47.51%), Query Frame = 2
Query:   74 SGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLR-YKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            S +IT   + E  +  ++++     ++  FI  +EE  +  A    L+   +  P++   G+ I +KD I      TT G+K LH   P   DA  + ++     I VGK NM E   G S    ++   +N +D +K+                 PV+LG D GGS+R PAA  G+VG KPT+GR+   G++    ++  +G L   V+D  +   AI+G
Sbjct:   18 SKEITAVDLTEETLNRIQDTEE---QLGSFITVSEEKAMALAKAIDLKGITESNPLA---GIPIGIKDNIVTKDILTTAGSKMLHNFDPIY-DATVMDKVYQADMIPVGKLNMDEFAMGGSTETSYFKKTKNAWDQTKVPGGSSGGSASAVAAGQVPVSLGSDTGGSIRQPAAFNGIVGLKPTYGRVSRFGLIAFASSLDQIGPLTRNVKDNALALNAISG 231          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_EHRCJ (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Ehrlichia canis (strain Jake) GN=gatA PE=3 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.503e-18
Identity = 67/218 (30.73%), Postives = 104/218 (47.71%), Query Frame = 2
Query:  149 KMSFFINNNEEDILKQATESTLRYK-KGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPY----DPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPT---VSLPKVS 778
            K++ F+    E  L  A ++   +  + E ++ L G+ + +KD        TT  +  L    P   D+     L   GA+++GK NM E   G+S  N  +G  +NP+        +               LC  ALG D GGSVR PAA CG+VG KPT+GR    G++    ++   G+L  TVED+ ++  +I G   +Q PT   +++PK S
Sbjct:   38 KLNAFVTKTPEIALSAAEKADHIFTHQQENLTPLTGIPVGIKDLFCTKNVRTTACSNILKNFIP-QYDSTVTKLLLNNGAVMLGKLNMDEFAMGSSNSNSCFGNVKNPWIRADGAEVVPGGSSGGSSAAVAGFLCAGALGSDTGGSVRQPAAFCGIVGLKPTYGRCSRLGMIAFASSLDQAGVLTRTVEDSALMLQSICG-YDTQDPTSVNINVPKFS 253          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_CAMHC (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=gatA PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.503e-18
Identity = 55/162 (33.95%), Postives = 80/162 (49.38%), Query Frame = 2
Query:  251 GVLIAVKDEIDCSPYPTTGGTKWLHK-VRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            G+ IA+KD I    +  T  +  L   V P   DA  + +LR  G    G+TNM E   G++  +  YG   NP D S++               +   ALG D GGS+R PAA CG VGFKPT+GR+   G+   + ++  +G +   V DA +++  I G
Sbjct:   50 GIPIAIKDNIQVKNWSVTSASNILQGYVAPY--DATVITKLRSAGFAPFGRTNMDEFAMGSTTESSFYGKTLNPTDYSRVPGGSSGGSAAAVAAGIAVAALGSDTGGSIRQPAAFCGCVGFKPTYGRVSRYGLAAYSSSLDQIGPITQNVTDAAILFDVIAG 209          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_BACCZ (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Bacillus cereus (strain ZK / E33L) GN=gatA PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.503e-18
Identity = 62/191 (32.46%), Postives = 92/191 (48.17%), Query Frame = 2
Query:  161 FINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            F+  +EE+   +A E   +    E   +L G+ I VKD I  +   TT  +K L    P   DA  V +L+    I +GK NM E   G+S  N  +   +NP++   +                   +LG D GGS+R PAA CGVVG KPT+GR+   G++    ++  +G +  TVED   +  AI+G
Sbjct:   43 FLTLDEENARAKAKELDAKIG-AEDNGLLFGMPIGVKDNIVTNGLRTTCASKMLANFDPIY-DATVVQKLKAADTITIGKLNMDEFAMGSSNENSGFYATKNPWNLDYVPGGSSGGSAAAVAAGEVLFSLGSDTGGSIRQPAAYCGVVGLKPTYGRVSRYGLVAFASSLDQIGPITRTVEDNAYLLQAISG 231          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_BACCQ (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Bacillus cereus (strain Q1) GN=gatA PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.503e-18
Identity = 62/191 (32.46%), Postives = 92/191 (48.17%), Query Frame = 2
Query:  161 FINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            F+  +EE+   +A E   +    E   +L G+ I VKD I  +   TT  +K L    P   DA  V +L+    I +GK NM E   G+S  N  +   +NP++   +                   +LG D GGS+R PAA CGVVG KPT+GR+   G++    ++  +G +  TVED   +  AI+G
Sbjct:   43 FLTLDEENARAKAKELDAKIG-AEDNGLLFGMPIGVKDNIVTNGLRTTCASKMLANFDPIY-DATVVQKLKAADTITIGKLNMDEFAMGSSNENSGFYATKNPWNLDYVPGGSSGGSAAAVAAGEVLFSLGSDTGGSIRQPAAYCGVVGLKPTYGRVSRYGLVAFASSLDQIGPITRTVEDNAYLLQAISG 231          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_BACCN (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=gatA PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.503e-18
Identity = 63/191 (32.98%), Postives = 90/191 (47.12%), Query Frame = 2
Query:  161 FINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            F+  NEE+   +A E   +    E   +L G+ I VKD I      TT  +K L    P   DA  V +L     I +GK NM E   G+S  N  +   +NP++   +                   +LG D GGS+R PAA CGVVG KPT+GR+   G++    ++  +G +  TVED   +  AI+G
Sbjct:   43 FLTLNEENARAKAKELDAKIG-AEDNGLLFGMPIGVKDNIVTKGLRTTCASKMLANFDPIY-DATVVQKLNEADTITIGKLNMDEFAMGSSNENSGFYATKNPWNLEYVPGGSSGGSAAAVAAGEVLFSLGSDTGGSIRQPAAYCGVVGLKPTYGRVSRYGLVAFASSLDQIGPITRTVEDNAYLLQAISG 231          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_BACC7 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Bacillus cereus (strain AH187) GN=gatA PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.503e-18
Identity = 62/191 (32.46%), Postives = 92/191 (48.17%), Query Frame = 2
Query:  161 FINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            F+  +EE+   +A E   +    E   +L G+ I VKD I  +   TT  +K L    P   DA  V +L+    I +GK NM E   G+S  N  +   +NP++   +                   +LG D GGS+R PAA CGVVG KPT+GR+   G++    ++  +G +  TVED   +  AI+G
Sbjct:   43 FLTLDEENARAKAKELDAKIG-AEDNGLLFGMPIGVKDNIVTNGLRTTCASKMLANFDPIY-DATVVQKLKAADTITIGKLNMDEFAMGSSNENSGFYATKNPWNLDYVPGGSSGGSAAAVAAGEVLFSLGSDTGGSIRQPAAYCGVVGLKPTYGRVSRYGLVAFASSLDQIGPITRTVEDNAYLLQAISG 231          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_BACC4 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Bacillus cereus (strain B4264) GN=gatA PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.503e-18
Identity = 62/191 (32.46%), Postives = 92/191 (48.17%), Query Frame = 2
Query:  161 FINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            F+  +EE+   +A E   +    E   +L G+ I VKD I  +   TT  +K L    P   DA  V +L+    I +GK NM E   G+S  N  +   +NP++   +                   +LG D GGS+R PAA CGVVG KPT+GR+   G++    ++  +G +  TVED   +  AI+G
Sbjct:   43 FLTLDEENARAKAKELDAKIG-AEDNGLLFGMPIGVKDNIVTNGLRTTCASKMLANFDPIY-DATVVQKLKAADTITIGKLNMDEFAMGSSNENSGFYATKNPWNLDYVPGGSSGGSAAAVAAGEVLFSLGSDTGGSIRQPAAYCGVVGLKPTYGRVSRYGLVAFASSLDQIGPITRTVEDNAYLLQAISG 231          
The following BLAST results are available for this feature:
BLAST of FC878075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_MYCA11.151e-1835.76Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_MAGSM1.151e-1826.09Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_ENTFA1.503e-1829.41Glutamyl-tRNA(Gln) amidotransferase subunit A OS=E... [more]
GATA_EHRCJ1.503e-1830.73Glutamyl-tRNA(Gln) amidotransferase subunit A OS=E... [more]
GATA_CAMHC1.503e-1833.95Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_BACCZ1.503e-1832.46Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_BACCQ1.503e-1832.46Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_BACCN1.503e-1832.98Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_BACC71.503e-1832.46Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_BACC41.503e-1832.46Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA35BB11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA35BB11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878075 ID=FC878075; Name=FC878075; organism=Citrus clementina; type=EST; length=849bp
TCTGCCTCTGTCTTCAGAAAAGCAGCCGTTTTTCCATCGCTGGACTGTAT
TAGATTATTCAAAAGCCTACAGTTCCGGAGATATTACTCCTCGTATGGTA
GCAGAGCGGTTTATAACCGCAGTACGTGAGTCTTCAAACCCTCCAATGAA
AATGTCATTCTTCATTAACAACAATGAAGAAGATATTCTAAAGCAAGCTA
CAGAGTCGACTCTTCGGTATAAAAAAGGAGAGCCAATATCGGTTCTAGAT
GGAGTCCTAATTGCAGTCAAGGATGAAATTGATTGTTCTCCTTACCCAAC
TACAGGAGGCACCAAGTGGTTGCATAAAGTTAGACCTTGCACAGGTGATG
CATGCTGCGTTATGCGCCTCAGATTGTGCGGCGCCATACTTGTTGGGAAA
ACTAATATGCATGAGCTCGGGGCTGGAACAAGTGGGATAAATCCTCATTA
TGGGGTCGCTAGAAATCCATACGACCCCAGCAAAATCACTGGGGGTTCTT
CTAGTGGATCAGCAGCAGTGGTGGCTGCAGGATTGTGCCCTGTCGCCCTT
GGTGTTGATGGAGGAGGATCCGTGCGGATGCCTGCAGCTCTCTGTGGTGT
TGTTGGTTTTAAGCCAACTTTCGGGCGCATACCTCTTTCTGGTGTTCTTC
CACTGAACTGGACAGTAGGAATGGTTGGAATTTTAGCAGCCACTGTAGAA
GATGCATTGGTTGTTTATGCAGCTATTAATGGTCCACTTCCTTCCCAACA
GCCCACTGTTTCATTGCCAAAAGTATCGTTCCCACTGCTGAAGTCTGCAA
CATCAATATCAGCCATCAAATTGGGCAAGTATGATGCGTGGTTCAACGA
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