FC878075

Overview
NameFC878075
Unique NameFC878075
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length849
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_BACC2 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Bacillus cereus (strain G9842) GN=gatA PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.503e-18
Identity = 62/191 (32.46%), Postives = 92/191 (48.17%), Query Frame = 2
Query:  161 FINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            F+  +EE+   +A E   +    E   +L G+ I VKD I  +   TT  +K L    P   DA  V +L+    I +GK NM E   G+S  N  +   +NP++   +                   +LG D GGS+R PAA CGVVG KPT+GR+   G++    ++  +G +  TVED   +  AI+G
Sbjct:   43 FLTLDEENARAKAKELDAKIG-AEDNGLLFGMPIGVKDNIVTNGLRTTCASKMLANFDPIY-DATVVQKLKAADTITIGKLNMDEFAMGSSNENSGFYATKNPWNLDYVPGGSSGGSAAAVAAGEVLFSLGSDTGGSIRQPAAYCGVVGLKPTYGRVSRYGLVAFASSLDQIGPITRTVEDNAYLLQAISG 231          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_BACC1 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Bacillus cereus (strain ATCC 10987) GN=gatA PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.503e-18
Identity = 62/191 (32.46%), Postives = 92/191 (48.17%), Query Frame = 2
Query:  161 FINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            F+  +EE+   +A E   +    E   +L G+ I VKD I  +   TT  +K L    P   DA  V +L+    I +GK NM E   G+S  N  +   +NP++   +                   +LG D GGS+R PAA CGVVG KPT+GR+   G++    ++  +G +  TVED   +  AI+G
Sbjct:   43 FLTLDEENARAKAKELDAKIG-AEDNGLLFGMPIGVKDNIVTNGLRTTCASKMLANFDPIY-DATVVQKLKAADTITIGKLNMDEFAMGSSNENSGFYATKNPWNLDYVPGGSSGGSAAAVAAGEVLFSLGSDTGGSIRQPAAYCGVVGLKPTYGRVSRYGLVAFASSLDQIGPITRTVEDNAYLLQAISG 231          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_RHOS4 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=gatA PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.963e-18
Identity = 67/249 (26.91%), Postives = 115/249 (46.18%), Query Frame = 2
Query:   44 TVLDYSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPY--DPSKITXXXXXXXXXXXXXX-LCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSF 781
            T+ D   A + G+++   +    +TA+ ++  P   ++ F++   E  L QA  +  R  +G     L+G+ + +KD        +   +  L   +P   ++    +L   GA+++GK NM E   G+S     YG A NP+  D  ++T               LC  A G D GGS+R PAA  G+VG KPT+GR+   G++    ++   G +  +V DA ++  A+ G  P    +  +P   F
Sbjct:    7 TIADARDALAKGELSAVDLTMACLTAI-DAGTP---LNAFVHATPEIALDQARAADAR--RGAGAGALNGIPLGIKDLFCTRGVASQAASNILKGFKP-EYESTVTSKLFEAGAVMLGKLNMDEFAMGSSNETSCYGDAVNPWKVDDRRLTPGGSSGGSAAAVAADLCLAATGTDTGGSIRQPAAFTGIVGIKPTYGRVSRWGIVAFASSLDQAGPMTKSVRDAAILLGAMAGHDPKDSTSADIPVPDF 248          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_MYCVP (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=gatA PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.963e-18
Identity = 60/175 (34.29%), Postives = 85/175 (48.57%), Query Frame = 2
Query:  239 SVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVS 763
            S L GV +A+KD    +  PTT G+K L        DA    +LR  G  ++GKTNM E   G+S  N  YG  RNP++   +                 P+A+G D GGS+R PAAL   VG KPT+G +   G++    ++   G  A TV D  +++  I G  P    +V+
Sbjct:   75 SPLAGVPLALKDVFTTTDMPTTCGSKILEGWTS-PYDATVTAKLRAAGIPILGKTNMDEFAMGSSTENSAYGPTRNPWNVDCVPGGSGGGSAAALAAFQAPLAIGSDTGGSIRQPAALTATVGVKPTYGTVSRYGLIACASSLDQGGPCARTVLDTALLHQVIAGHDPRDSTSVN 248          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_MACCJ (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Macrococcus caseolyticus (strain JCSC5402) GN=gatA PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.963e-18
Identity = 64/216 (29.63%), Postives = 92/216 (42.59%), Query Frame = 2
Query:  161 FINNNEEDIL---------KQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSF 781
            F+N  ++D +         + A E         P   L G+ + +KD I      TT  +K L        DA  + +L     ILVGK NM E   G S  N  Y    NP+D   +               L P +LG D GGS+R PA+ CGVVG KPT+GR+   G++    ++  +G +   V+D   V   I+G  P    +  +  V F
Sbjct:   30 FVNIEKDDTVINSFLALDKEAALEKAKTMDNETPSGKLFGIPMGIKDNIVTKDVETTCASKILEGFNSVY-DATVMNKLNAENGILVGKLNMDEFAMGGSTENSFYKKTVNPFDHKAVPGGSSGGSAAAVAASLVPFSLGSDTGGSIRQPASYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPITRNVKDNATVLEVISGLDPHDSTSAPVDNVDF 244          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_ACIAD (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Acinetobacter sp. (strain ADP1) GN=gatA PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.963e-18
Identity = 64/272 (23.53%), Postives = 118/272 (43.38%), Query Frame = 2
Query:   35 HRWTVLDYSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHK-VRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATSISAIKLGKYDAWFN 847
            HR +V + ++       + R + + ++  + +      ++  ++    E  L QA  +    + G     L GV +A KD        TT G+K L   + P   +A  V +    G + +GK NM E   G++  + ++G   NP+   ++               L P A G D GGS+R PA+ CG+ G KPT+GR+   G++    ++   G +A + ED   +   + G       +V      +    +AT++  +++G    +FN
Sbjct:    5 HRLSVRELAEGLGQAQFSSRELTQHYLNRIDKID---AQVKSYVTVTHEQALAQADAADALRQAGNA-GFLTGVPLAHKDIFCTKGIKTTAGSKMLDNFISPY--NATVVEKANAAGLVTLGKLNMDEFAMGSTSESSYFGATCNPWALDRVPGGSSGGSAAAVAADLAPFATGTDTGGSIRQPASFCGLTGLKPTYGRVSRFGMIAYASSLDQGGPMARSAEDCAYLMNVMAGHDAKDSTSVKKDVDDYVANLNATALKGLRIGIPKQYFN 270          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_WOLWR (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Wolbachia sp. subsp. Drosophila simulans (strain wRi) GN=gatA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.564e-18
Identity = 73/239 (30.54%), Postives = 111/239 (46.44%), Query Frame = 2
Query:   98 VAERFITAVRESSNPPMKMSFFINNNEEDILK--QATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPY----DPSKITXXXXXXXXXXXXXX-LCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING-----PLPSQQPTVSLPKVS 778
            + E  I+AV        K++ FI    E  +K  +A +     +K + IS L GV + +KD        TT  +K L    P        + L+  GA ++GK NM E   G++  N ++G   N +    D  K+                LC  ALG D GGSVR PAA CGVVG KPT+GR    G++    ++   G++  +V D+ ++  AI G      + S++P   +PK+S
Sbjct:   26 LVEAHISAVENE-----KLNAFITKTPEIAMKAAKAADEHFSRQKDDLISPLMGVPVGIKDLFCTKGIKTTACSKMLENFVPTYESTVSDLLLK-SGAAMLGKLNMDEFAMGSANTNSYFGPVENVWIRKSDGEKVVPGGSSGGSAASVAGFLCAGALGSDTGGSVRQPAAYCGVVGIKPTYGRCSRFGMIAFASSLDQAGVITRSVSDSALMLEAICGYDTKDSISSEKP---VPKLS 255          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_WOLTR (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Wolbachia sp. subsp. Brugia malayi (strain TRS) GN=gatA PE=3 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 2.564e-18
Identity = 65/202 (32.18%), Postives = 95/202 (47.03%), Query Frame = 2
Query:  149 KMSFFINNNEEDILKQATESTLRY--KKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPY----DPSKITXXXXXXXXXXXXXX-LCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            K++ FI    E  +K A  +  R+  +K   IS L G+ + VKD        TT  +K L    P        + L+  GA ++GK NM E   G++ IN ++G   N +    D  K+                LC  ALG D GGSVR PAA CGVVG KPT+GR    G++    ++   G++  +V D+ ++   I G
Sbjct:   38 KLNAFITKTPEIAIKAAKTADERFSQQKDSTISPLMGIPVGVKDLFCTKGVKTTACSKMLENFIPTYESTVSDLLLK-SGAAMLGKLNMDEFAMGSANINSYFGPVENVWVRKSDGEKVVPGGSSGGSAASVAGFLCAGALGSDTGGSVRQPAAYCGVVGAKPTYGRCSRFGMIAFASSLDQAGVITRSVSDSALMLETICG 238          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_EHRRW (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Ehrlichia ruminantium (strain Welgevonden) GN=gatA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.564e-18
Identity = 63/200 (31.50%), Postives = 95/200 (47.50%), Query Frame = 2
Query:  149 KMSFFINNNEEDILKQATEST-LRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSK----ITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            +++ FI    E  L  A ++  +   + + I+ L G+ + +KD        TT  +  L    P   D+  V RL   GA+++GK NM E   G+S  N  +G   NP+  +     +               LC  ALG D GGSVR PAA CG+VG KPT+GR    G++    ++   G+L  TV+DA ++   I G
Sbjct:   38 QLNAFITKTPEVALDAARKADHILIHEQDKITPLTGIPVGIKDLFCTKNIKTTACSNILRNFTP-QYDSTVVKRLIDDGAVMLGKLNMDEFAMGSSNSNSCFGPVENPWTRADGVKVVPGGSSGGSSAAVAGFLCAGALGSDTGGSVRQPAAFCGIVGLKPTYGRCSRLGMIAFASSLDQAGVLTRTVKDAALMLQPICG 236          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_BURXL (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Burkholderia xenovorans (strain LB400) GN=gatA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.564e-18
Identity = 63/233 (27.04%), Postives = 108/233 (46.35%), Query Frame = 2
Query:   35 HRWTVLDYSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            H  ++ +   A ++ + +   +A+ ++  +  +++    ++ FI  + +  L QA  +      G     L G+ IA KD      + +T G+K L        DA  V RL+  G + VGKTNM E   G+S  N ++G  +NP+D   +               L P A G D GGS+R PA+  G+ G KPT+GR+   G++    ++   G +A +  D   +  A+ G
Sbjct:    2 HEKSLTELRAALTARECSAVELAQLYLKRIEAANS----LNAFIQVDPDLTLAQAKAADALLHTGHA-GPLVGLPIAHKDVFVTKGWRSTAGSKMLSNYES-PFDATVVARLQNAGMVCVGKTNMDEFAMGSSNENSYFGPVQNPWDVKAVPGGSSGGSAAAVAARLAPAATGTDTGGSIRQPASFSGITGIKPTYGRVSRYGMIAFASSLDQGGPMARSAADCATLLNAMAG 228          
The following BLAST results are available for this feature:
BLAST of FC878075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_BACC21.503e-1832.46Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_BACC11.503e-1832.46Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_RHOS41.963e-1826.91Glutamyl-tRNA(Gln) amidotransferase subunit A OS=R... [more]
GATA_MYCVP1.963e-1834.29Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_MACCJ1.963e-1829.63Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_ACIAD1.963e-1823.53Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_WOLWR2.564e-1830.54Glutamyl-tRNA(Gln) amidotransferase subunit A OS=W... [more]
GATA_WOLTR2.564e-1832.18Glutamyl-tRNA(Gln) amidotransferase subunit A OS=W... [more]
GATA_EHRRW2.564e-1831.50Glutamyl-tRNA(Gln) amidotransferase subunit A OS=E... [more]
GATA_BURXL2.564e-1827.04Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA35BB11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA35BB11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878075 ID=FC878075; Name=FC878075; organism=Citrus clementina; type=EST; length=849bp
TCTGCCTCTGTCTTCAGAAAAGCAGCCGTTTTTCCATCGCTGGACTGTAT
TAGATTATTCAAAAGCCTACAGTTCCGGAGATATTACTCCTCGTATGGTA
GCAGAGCGGTTTATAACCGCAGTACGTGAGTCTTCAAACCCTCCAATGAA
AATGTCATTCTTCATTAACAACAATGAAGAAGATATTCTAAAGCAAGCTA
CAGAGTCGACTCTTCGGTATAAAAAAGGAGAGCCAATATCGGTTCTAGAT
GGAGTCCTAATTGCAGTCAAGGATGAAATTGATTGTTCTCCTTACCCAAC
TACAGGAGGCACCAAGTGGTTGCATAAAGTTAGACCTTGCACAGGTGATG
CATGCTGCGTTATGCGCCTCAGATTGTGCGGCGCCATACTTGTTGGGAAA
ACTAATATGCATGAGCTCGGGGCTGGAACAAGTGGGATAAATCCTCATTA
TGGGGTCGCTAGAAATCCATACGACCCCAGCAAAATCACTGGGGGTTCTT
CTAGTGGATCAGCAGCAGTGGTGGCTGCAGGATTGTGCCCTGTCGCCCTT
GGTGTTGATGGAGGAGGATCCGTGCGGATGCCTGCAGCTCTCTGTGGTGT
TGTTGGTTTTAAGCCAACTTTCGGGCGCATACCTCTTTCTGGTGTTCTTC
CACTGAACTGGACAGTAGGAATGGTTGGAATTTTAGCAGCCACTGTAGAA
GATGCATTGGTTGTTTATGCAGCTATTAATGGTCCACTTCCTTCCCAACA
GCCCACTGTTTCATTGCCAAAAGTATCGTTCCCACTGCTGAAGTCTGCAA
CATCAATATCAGCCATCAAATTGGGCAAGTATGATGCGTGGTTCAACGA
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