FC878075

Overview
NameFC878075
Unique NameFC878075
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length849
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_BACHK (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Bacillus thuringiensis subsp. konkukian GN=gatA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.564e-18
Identity = 62/191 (32.46%), Postives = 92/191 (48.17%), Query Frame = 2
Query:  161 FINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            F+  +EE+   +A E   +    E   +L G+ I VKD I  +   TT  +K L    P   DA  V +L+    I +GK NM E   G+S  N  +   +NP++   +                   +LG D GGS+R PAA CGVVG KPT+GR+   G++    ++  +G +  TVED   +  AI+G
Sbjct:   43 FLTLDEENARAKAKELDAKIG-AEDNGLLFGMPIGVKDNIVTNGLRTTCASKILANFDPIY-DATVVQKLKAADTITIGKLNMDEFAMGSSNENSGFYATKNPWNLDYVPGGSSGGSAAAVAAGEVLFSLGSDTGGSIRQPAAYCGVVGLKPTYGRVSRYGLVAFASSLDQIGPITRTVEDNAYLLQAISG 231          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_BACCR (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=gatA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.564e-18
Identity = 62/191 (32.46%), Postives = 92/191 (48.17%), Query Frame = 2
Query:  161 FINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            F+  +EE+   +A E   +    E   +L G+ I VKD I  +   TT  +K L    P   DA  V +L+    I +GK NM E   G+S  N  +   +NP++   +                   +LG D GGS+R PAA CGVVG KPT+GR+   G++    ++  +G +  TVED   +  AI+G
Sbjct:   43 FLTLDEENARAKAKELDAKIG-AEDNGLLFGMPIGVKDNIVTNGLRTTCASKILANFDPIY-DATVVQKLKAADTITIGKLNMDEFAMGSSNENSGFYATKNPWNLDYVPGGSSGGSAAAVAAGEVLFSLGSDTGGSIRQPAAYCGVVGLKPTYGRVSRYGLVAFASSLDQIGPITRTVEDNAYLLQAISG 231          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_BACC3 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Bacillus cereus (strain 03BB102) GN=gatA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.564e-18
Identity = 62/191 (32.46%), Postives = 92/191 (48.17%), Query Frame = 2
Query:  161 FINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            F+  +EE+   +A E   +    E   +L G+ I VKD I  +   TT  +K L    P   DA  V +L+    I +GK NM E   G+S  N  +   +NP++   +                   +LG D GGS+R PAA CGVVG KPT+GR+   G++    ++  +G +  TVED   +  AI+G
Sbjct:   43 FLTLDEENARAKAKELDAKIG-AEDNGLLFGMPIGVKDNIVTNGLRTTCASKILANFDPIY-DATVVQKLKAADTITIGKLNMDEFAMGSSNENSGFYATKNPWNLDYVPGGSSGGSAAAVAAGEVLFSLGSDTGGSIRQPAAYCGVVGLKPTYGRVSRYGLVAFASSLDQIGPITRTVEDNAYLLQAISG 231          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_BACC0 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Bacillus cereus (strain AH820) GN=gatA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.564e-18
Identity = 62/191 (32.46%), Postives = 92/191 (48.17%), Query Frame = 2
Query:  161 FINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            F+  +EE+   +A E   +    E   +L G+ I VKD I  +   TT  +K L    P   DA  V +L+    I +GK NM E   G+S  N  +   +NP++   +                   +LG D GGS+R PAA CGVVG KPT+GR+   G++    ++  +G +  TVED   +  AI+G
Sbjct:   43 FLTLDEENARAKAKELDAKIG-AEDNGLLFGMPIGVKDNIVTNGLRTTCASKILANFDPIY-DATVVQKLKAADTITIGKLNMDEFAMGSSNENSGFYATKNPWNLDYVPGGSSGGSAAAVAAGEVLFSLGSDTGGSIRQPAAYCGVVGLKPTYGRVSRYGLVAFASSLDQIGPITRTVEDNAYLLQAISG 231          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_BACAN (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Bacillus anthracis GN=gatA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.564e-18
Identity = 62/191 (32.46%), Postives = 92/191 (48.17%), Query Frame = 2
Query:  161 FINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            F+  +EE+   +A E   +    E   +L G+ I VKD I  +   TT  +K L    P   DA  V +L+    I +GK NM E   G+S  N  +   +NP++   +                   +LG D GGS+R PAA CGVVG KPT+GR+   G++    ++  +G +  TVED   +  AI+G
Sbjct:   43 FLTLDEENARAKAKELDAKIG-AEDNGLLFGMPIGVKDNIVTNGLRTTCASKILANFDPIY-DATVVQKLKAADTITIGKLNMDEFAMGSSNENSGFYATKNPWNLDYVPGGSSGGSAAAVAAGEVLFSLGSDTGGSIRQPAAYCGVVGLKPTYGRVSRYGLVAFASSLDQIGPITRTVEDNAYLLQAISG 231          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_BACAH (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Bacillus thuringiensis (strain Al Hakam) GN=gatA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.564e-18
Identity = 62/191 (32.46%), Postives = 92/191 (48.17%), Query Frame = 2
Query:  161 FINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            F+  +EE+   +A E   +    E   +L G+ I VKD I  +   TT  +K L    P   DA  V +L+    I +GK NM E   G+S  N  +   +NP++   +                   +LG D GGS+R PAA CGVVG KPT+GR+   G++    ++  +G +  TVED   +  AI+G
Sbjct:   43 FLTLDEENARAKAKELDAKIG-AEDNGLLFGMPIGVKDNIVTNGLRTTCASKILANFDPIY-DATVVQKLKAADTITIGKLNMDEFAMGSSNENSGFYATKNPWNLDYVPGGSSGGSAAAVAAGEVLFSLGSDTGGSIRQPAAYCGVVGLKPTYGRVSRYGLVAFASSLDQIGPITRTVEDNAYLLQAISG 231          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_BACAC (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=gatA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.564e-18
Identity = 62/191 (32.46%), Postives = 92/191 (48.17%), Query Frame = 2
Query:  161 FINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            F+  +EE+   +A E   +    E   +L G+ I VKD I  +   TT  +K L    P   DA  V +L+    I +GK NM E   G+S  N  +   +NP++   +                   +LG D GGS+R PAA CGVVG KPT+GR+   G++    ++  +G +  TVED   +  AI+G
Sbjct:   43 FLTLDEENARAKAKELDAKIG-AEDNGLLFGMPIGVKDNIVTNGLRTTCASKILANFDPIY-DATVVQKLKAADTITIGKLNMDEFAMGSSNENSGFYATKNPWNLDYVPGGSSGGSAAAVAAGEVLFSLGSDTGGSIRQPAAYCGVVGLKPTYGRVSRYGLVAFASSLDQIGPITRTVEDNAYLLQAISG 231          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_BACAA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Bacillus anthracis (strain A0248) GN=gatA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.564e-18
Identity = 62/191 (32.46%), Postives = 92/191 (48.17%), Query Frame = 2
Query:  161 FINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            F+  +EE+   +A E   +    E   +L G+ I VKD I  +   TT  +K L    P   DA  V +L+    I +GK NM E   G+S  N  +   +NP++   +                   +LG D GGS+R PAA CGVVG KPT+GR+   G++    ++  +G +  TVED   +  AI+G
Sbjct:   43 FLTLDEENARAKAKELDAKIG-AEDNGLLFGMPIGVKDNIVTNGLRTTCASKILANFDPIY-DATVVQKLKAADTITIGKLNMDEFAMGSSNENSGFYATKNPWNLDYVPGGSSGGSAAAVAAGEVLFSLGSDTGGSIRQPAAYCGVVGLKPTYGRVSRYGLVAFASSLDQIGPITRTVEDNAYLLQAISG 231          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_ARCB4 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Arcobacter butzleri (strain RM4018) GN=gatA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.564e-18
Identity = 68/220 (30.91%), Postives = 102/220 (46.36%), Query Frame = 2
Query:  179 EDILKQATESTLRYKKG------EPISVLD------GVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING--PLPSQQPTVSLPKVSFPLLKS 796
            +DI K   + TL+ K+       E ++  D      G+ IA+KD I+   +  T  +  L K      +A  + +L   G    G+TNM E   G+S  +  YG   NP D  K+               +   ALG D GGS+R PAA CG VG KPT+GR+   G+   + ++   G +   VEDA ++Y  I+G  P+ S    ++   V+ P L S
Sbjct:   13 DDIKKLRDDLTLKIKESKIGAYVEQLTSTDISQSGVGIPIAIKDNINVKNWEITCSSNIL-KGYISPYNATVIEKLEKAGLSPFGRTNMDEFAMGSSTESSCYGKTLNPIDNEKVPGGSSGGSAAAVAGGIAIAALGTDTGGSIRQPAAYCGCVGMKPTYGRVSRYGITAYSSSLDQCGPITQNVEDAAILYDIISGYDPMDSTSANINYEAVT-PKLNS 230          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_THIDA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Thiobacillus denitrificans (strain ATCC 25259) GN=gatA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.349e-18
Identity = 67/234 (28.63%), Postives = 106/234 (45.30%), Query Frame = 2
Query:   83 ITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHK-VRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSF 781
            ++ R +A++++  +  + NP +    FI  + E  L +A  +      G     L GV IA KD      + TT G+K L   V P   DA  + R +  G   +GKTNM E   G+S     +G  +NP++   +               + P A G D GGS+R PAALCG+ G KPT+G +   G++    ++   G +A + ED   +   I G  P    ++   K  +
Sbjct:   18 VSSRELAQQYLDRIA-ALNPTINA--FITVDPEKTLAEAAAADALIAGGAA-GPLTGVPIAHKDIFCTDGWLTTCGSKMLANFVAPY--DAHVIERCKAAGMPSLGKTNMDEFAMGSSNETSFFGAVKNPWNAGYVPGGSSGGAAACVAARMAPAATGTDTGGSIRQPAALCGITGLKPTYGLVSRYGMIAFASSLDQAGPMAPSAEDCARLLNVITGFDPKDSTSLEREKEDY 245          
The following BLAST results are available for this feature:
BLAST of FC878075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_BACHK2.564e-1832.46Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_BACCR2.564e-1832.46Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_BACC32.564e-1832.46Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_BACC02.564e-1832.46Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_BACAN2.564e-1832.46Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_BACAH2.564e-1832.46Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_BACAC2.564e-1832.46Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_BACAA2.564e-1832.46Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_ARCB42.564e-1830.91Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_THIDA3.349e-1828.63Glutamyl-tRNA(Gln) amidotransferase subunit A OS=T... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA35BB11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA35BB11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878075 ID=FC878075; Name=FC878075; organism=Citrus clementina; type=EST; length=849bp
TCTGCCTCTGTCTTCAGAAAAGCAGCCGTTTTTCCATCGCTGGACTGTAT
TAGATTATTCAAAAGCCTACAGTTCCGGAGATATTACTCCTCGTATGGTA
GCAGAGCGGTTTATAACCGCAGTACGTGAGTCTTCAAACCCTCCAATGAA
AATGTCATTCTTCATTAACAACAATGAAGAAGATATTCTAAAGCAAGCTA
CAGAGTCGACTCTTCGGTATAAAAAAGGAGAGCCAATATCGGTTCTAGAT
GGAGTCCTAATTGCAGTCAAGGATGAAATTGATTGTTCTCCTTACCCAAC
TACAGGAGGCACCAAGTGGTTGCATAAAGTTAGACCTTGCACAGGTGATG
CATGCTGCGTTATGCGCCTCAGATTGTGCGGCGCCATACTTGTTGGGAAA
ACTAATATGCATGAGCTCGGGGCTGGAACAAGTGGGATAAATCCTCATTA
TGGGGTCGCTAGAAATCCATACGACCCCAGCAAAATCACTGGGGGTTCTT
CTAGTGGATCAGCAGCAGTGGTGGCTGCAGGATTGTGCCCTGTCGCCCTT
GGTGTTGATGGAGGAGGATCCGTGCGGATGCCTGCAGCTCTCTGTGGTGT
TGTTGGTTTTAAGCCAACTTTCGGGCGCATACCTCTTTCTGGTGTTCTTC
CACTGAACTGGACAGTAGGAATGGTTGGAATTTTAGCAGCCACTGTAGAA
GATGCATTGGTTGTTTATGCAGCTATTAATGGTCCACTTCCTTCCCAACA
GCCCACTGTTTCATTGCCAAAAGTATCGTTCCCACTGCTGAAGTCTGCAA
CATCAATATCAGCCATCAAATTGGGCAAGTATGATGCGTGGTTCAACGA
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