FC878075

Overview
NameFC878075
Unique NameFC878075
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length849
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_THEMA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Thermotoga maritima GN=gatA PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.349e-18
Identity = 57/177 (32.20%), Postives = 89/177 (50.28%), Query Frame = 2
Query:  251 GVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSF 781
            G+ +A+KD I      TT  ++ L        DA  V +++  G ++VGK N+ E   G+S     +   RNP+D  ++               +   ALG D GGSVR PA+LCGVVG+KPT+G +   G++    ++  +G +  TV DA ++   I+G   +   TV+  KV F
Sbjct:   60 GIPVAIKDNILTLGMRTTCASRILENYESVF-DATVVKKMKEAGFVVVGKANLDEFAMGSSTERSAFFPTRNPWDLERVPGGSSGGSAAAVSAGMVVAALGSDTGGSVRQPASLCGVVGYKPTYGLVSRYGLVAFASSLDQIGPITKTVRDAAILMEIISGRDENDATTVN-RKVDF 234          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_RHOSK (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) GN=gatA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.349e-18
Identity = 66/249 (26.51%), Postives = 115/249 (46.18%), Query Frame = 2
Query:   44 TVLDYSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPY--DPSKITXXXXXXXXXXXXXX-LCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSF 781
            T+ +   A + G+++   +    +TA+ ++  P   ++ F++   E  L QA  +  R  +G     L+G+ + +KD        +   +  L   +P   ++    +L   GA+++GK NM E   G+S     YG A NP+  D  ++T               LC  A G D GGS+R PAA  G+VG KPT+GR+   G++    ++   G +  +V DA ++  A+ G  P    +  +P   F
Sbjct:    7 TIAEARDALAKGELSAVDLTMACLTAI-DAGTP---LNAFVHATPEIALDQARAADAR--RGAEAGALNGIPLGIKDLFCTRGVASQAASNILRGFKP-EYESTVTSKLFEAGAVMLGKLNMDEFAMGSSNETSCYGDAVNPWKVDDRRLTPGGSSGGSAAAVAADLCLAATGTDTGGSIRQPAAFTGIVGIKPTYGRVSRWGIVAFASSLDQAGPMTKSVRDAAILLGAMAGHDPKDSTSADIPVPDF 248          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_RHOS1 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=gatA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.349e-18
Identity = 66/249 (26.51%), Postives = 115/249 (46.18%), Query Frame = 2
Query:   44 TVLDYSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPY--DPSKITXXXXXXXXXXXXXX-LCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSF 781
            T+ +   A + G+++   +    +TA+ ++  P   ++ F++   E  L QA  +  R  +G     L+G+ + +KD        +   +  L   +P   ++    +L   GA+++GK NM E   G+S     YG A NP+  D  ++T               LC  A G D GGS+R PAA  G+VG KPT+GR+   G++    ++   G +  +V DA ++  A+ G  P    +  +P   F
Sbjct:    7 TIAEARDALARGELSAVDLTMACLTAI-DAGTP---LNAFVHTTPEIALDQARAADAR--RGAGAGALNGIPLGIKDLFCTRGVASQAASNILRGFKP-EYESTVTSKLFEAGAVMLGKLNMDEFAMGSSNETSCYGDAVNPWKVDDRRLTPGGSSGGSAAAVAADLCLAATGTDTGGSIRQPAAFTGIVGIKPTYGRVSRWGIVAFASSLDQAGPMTKSVRDAAILLGAMAGHDPKDSTSADIPVPDF 248          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_METST (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methanosphaera stadtmanae (strain DSM 3091) GN=gatA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.349e-18
Identity = 67/253 (26.48%), Postives = 112/253 (44.27%), Query Frame = 2
Query:   47 VLDYSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATS 805
            V++  +A    +IT     E+  + + E ++    ++ F+  + E   K A +   R K  E    L G++I +K  I+   +  +  +  L      + +A  + R+     +++G TNM E  AG+S     YG   NP  P  I               +C + LG D GGS+R PA+ CGV+GFKPT+G +   G+L L  ++  +G  A       ++   I G  P    T++     F  LK  T+
Sbjct:    3 VIEKVEAIKQQEITATENLEQMYSTIEEKNDD---INAFVQLDIEKARKTAEDIDKRIKNNEETGKLAGLVIGIKSNINVEDFIISAASPTLKNYYG-SYNATVINRILDEDGVIIGLTNMDEFAAGSSTETSMYGPTNNPKAPGHIPGGSSGGSAAAIAANMCDITLGSDTGGSIRNPASHCGVMGFKPTYGMVSRQGLLDLAMSLDQIGPFANDTTGIGLMLNVICGYDPYDTTTINKQPEDF--LKDTTN 249          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_BORA1 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Bordetella avium (strain 197N) GN=gatA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.349e-18
Identity = 68/218 (31.19%), Postives = 101/218 (46.33%), Query Frame = 2
Query:   98 VAERFITAVR------ESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            +AER ++AV        ++     ++ F++ + E  L QA  +      G     L G+ IA KD      + +T G+K L        DA  V RL+  GA+ +GK N  E   G+   N  +G ARNP+D + +               L   A G D GGSVR PAALCGV G KPT+G +   G++    ++   G LA +  D L +   ++G
Sbjct:   20 LAERRVSAVELAESGLAAAQAAAGLNAFLHIDPELTLVQARAADAALAAGTA-GPLAGIPIAHKDAFVTRGWRSTAGSKMLRDYLS-PFDATVVERLQAAGAVSLGKLNCDEFAMGSGNENSAFGPARNPWDLAAVPGGSSGGSAAAVAARLVAGATGTDTGGSVRQPAALCGVSGIKPTYGTVSRYGMIAFGSSLDQAGPLAPSSRDLLELLDVMSG 235          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_BACWK (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Bacillus weihenstephanensis (strain KBAB4) GN=gatA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.349e-18
Identity = 61/191 (31.94%), Postives = 92/191 (48.17%), Query Frame = 2
Query:  161 FINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            F+  +EE+   +A E   +    E   +L G+ I VKD I  +   TT  +K L    P   DA  V +L+    + +GK NM E   G+S  N  +   +NP++   +                   +LG D GGS+R PAA CGVVG KPT+GR+   G++    ++  +G +  TVED   +  AI+G
Sbjct:   43 FLTLDEENARAKAKELDAKIG-AEDNGLLFGMPIGVKDNIVTNGLRTTCASKILANFDPIY-DATVVQKLKAADTVTIGKLNMDEFAMGSSNENSGFYATKNPWNLDYVPGGSSGGSAAAVAAGEVLFSLGSDTGGSIRQPAAYCGVVGLKPTYGRVSRYGLVAFASSLDQIGPITRTVEDNAYLLQAISG 231          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: AMID_PSEPU (Amidase OS=Pseudomonas putida PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.349e-18
Identity = 72/249 (28.92%), Postives = 120/249 (48.19%), Query Frame = 2
Query:   38 RWTVLDYSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFK-PTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSF 781
            R T+   ++   + +++   V +  +T VR S+   +     +  ++      AT++ +R +   P   L GV +AVKD  D +  PTT  +   H++     D   V RL+  GA+++GKT+ HE   G   I P    +RNP DP +                   +A G D GGSVR+P+++C  VG K PT GR+  +GV  L+W++   G +  TVED  ++   + G  P+   ++  P  S+
Sbjct:    6 RLTLAQVAQKLKAREVSAVEVLDACLTQVR-STEKQISAYVCVLEDQARAAAHATDADIRGRWKGP---LHGVPVAVKDLYDIAGVPTTASSP-AHEL-DAQQDPARVRRLQDAGAVILGKTHTHEFAYGR--ITPK---SRNPRDPGRTPGGSSGGSAATVAACCVYLATGTDTGGSVRIPSSMCNTVGLKQPTVGRVHGAGVSSLSWSLDHPGPITRTVEDTALMLQVMAGFDPADPRSLDEPVPSY 243          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_WOLPM (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Wolbachia pipientis wMel GN=gatA PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.374e-18
Identity = 68/219 (31.05%), Postives = 101/219 (46.12%), Query Frame = 2
Query:   98 VAERFITAVRESSNPPMKMSFFINNNEEDILK--QATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPY----DPSKITXXXXXXXXXXXXXX-LCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            + E  I+AV        K++ FI    E  +K  +A +     +K + IS L GV + +KD        TT  +K L    P        + L+  GA ++GK NM E   G++  N ++G   N +    D  K+                LC  ALG D GGSVR PAA CGVVG KPT+GR    G++    ++   G++  +V D+ ++  AI G
Sbjct:   26 LVEAHISAVENE-----KLNAFITKTPEIAMKAAKAADEHFSRQKDDLISPLMGVPVGIKDLFCTKGIKTTACSKMLENFVPTYESTVSDLLLK-SGAAMLGKLNMDEFAMGSANTNSYFGPVENVWIRKSDGEKVVPGGSSGGSAASVAGFLCAGALGSDTGGSVRQPAAYCGVVGIKPTYGRCSRFGMIAFASSLDQAGVITRSVSDSALMLEAICG 238          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_STRPG (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Streptococcus pyogenes serotype M5 (strain Manfredo) GN=gatA PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.374e-18
Identity = 59/181 (32.60%), Postives = 89/181 (49.17%), Query Frame = 2
Query:  161 FINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVED 703
            FI  +EE  LKQA  + +  K  +  +++ G+ +AVKD I      TT  +K LH   P   DA  V        I++GKTNM E   G S    ++   +N +D +K+                  ++LG D GGS+R PAA  GVVG KPT+G +   G++    ++  +G  A TV++
Sbjct:   43 FITVSEEAALKQA--AAIDAKGIDADNLMSGIPLAVKDNISTKGILTTAASKMLHNYEPIF-DATSVANAYAKDMIVIGKTNMDEFAMGGSTETSYFKKTKNAWDHTKVPGGSSGGSATAVASGQVRLSLGSDTGGSIRQPAAFNGVVGLKPTYGTVSRYGLIAFGSSLDQIGPFAPTVKE 220          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_BURPP (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=gatA PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.374e-18
Identity = 54/163 (33.13%), Postives = 79/163 (48.47%), Query Frame = 2
Query:  245 LDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            L G+ IA KD      + +T G+K L        DA  V RL+  G + VGKTNM E   G+S  N ++G  +NP+D   +               L P A G D GGS+R PA+  G+ G KPT+GR+   G++    ++   G +A +  D   +  A+ G
Sbjct:   67 LVGLPIAHKDVFVTKGWRSTAGSKMLSNYES-PFDATVVARLQNAGMVCVGKTNMDEFAMGSSNENSYFGPVQNPWDVKAVPGGSSGGSAAAVAARLAPAATGTDTGGSIRQPASFSGITGIKPTYGRVSRYGMIAFASSLDQGGPMAQSAADCATLLNAMAG 228          
The following BLAST results are available for this feature:
BLAST of FC878075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_THEMA3.349e-1832.20Glutamyl-tRNA(Gln) amidotransferase subunit A OS=T... [more]
GATA_RHOSK3.349e-1826.51Glutamyl-tRNA(Gln) amidotransferase subunit A OS=R... [more]
GATA_RHOS13.349e-1826.51Glutamyl-tRNA(Gln) amidotransferase subunit A OS=R... [more]
GATA_METST3.349e-1826.48Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_BORA13.349e-1831.19Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_BACWK3.349e-1831.94Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
AMID_PSEPU3.349e-1828.92Amidase OS=Pseudomonas putida PE=3 SV=1[more]
GATA_WOLPM4.374e-1831.05Glutamyl-tRNA(Gln) amidotransferase subunit A OS=W... [more]
GATA_STRPG4.374e-1832.60Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_BURPP4.374e-1833.13Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA35BB11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA35BB11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878075 ID=FC878075; Name=FC878075; organism=Citrus clementina; type=EST; length=849bp
TCTGCCTCTGTCTTCAGAAAAGCAGCCGTTTTTCCATCGCTGGACTGTAT
TAGATTATTCAAAAGCCTACAGTTCCGGAGATATTACTCCTCGTATGGTA
GCAGAGCGGTTTATAACCGCAGTACGTGAGTCTTCAAACCCTCCAATGAA
AATGTCATTCTTCATTAACAACAATGAAGAAGATATTCTAAAGCAAGCTA
CAGAGTCGACTCTTCGGTATAAAAAAGGAGAGCCAATATCGGTTCTAGAT
GGAGTCCTAATTGCAGTCAAGGATGAAATTGATTGTTCTCCTTACCCAAC
TACAGGAGGCACCAAGTGGTTGCATAAAGTTAGACCTTGCACAGGTGATG
CATGCTGCGTTATGCGCCTCAGATTGTGCGGCGCCATACTTGTTGGGAAA
ACTAATATGCATGAGCTCGGGGCTGGAACAAGTGGGATAAATCCTCATTA
TGGGGTCGCTAGAAATCCATACGACCCCAGCAAAATCACTGGGGGTTCTT
CTAGTGGATCAGCAGCAGTGGTGGCTGCAGGATTGTGCCCTGTCGCCCTT
GGTGTTGATGGAGGAGGATCCGTGCGGATGCCTGCAGCTCTCTGTGGTGT
TGTTGGTTTTAAGCCAACTTTCGGGCGCATACCTCTTTCTGGTGTTCTTC
CACTGAACTGGACAGTAGGAATGGTTGGAATTTTAGCAGCCACTGTAGAA
GATGCATTGGTTGTTTATGCAGCTATTAATGGTCCACTTCCTTCCCAACA
GCCCACTGTTTCATTGCCAAAAGTATCGTTCCCACTGCTGAAGTCTGCAA
CATCAATATCAGCCATCAAATTGGGCAAGTATGATGCGTGGTTCAACGA
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