FC878075

Overview
NameFC878075
Unique NameFC878075
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length849
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_BORPE (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Bordetella pertussis GN=gatA PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.374e-18
Identity = 58/163 (35.58%), Postives = 75/163 (46.01%), Query Frame = 2
Query:  245 LDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            L G+ IA KD      + TT G+K L        DA  V RL   GA+ +GK N  E   G+   N  YG  RNP+D   +               L   A G D GGSVR PAALCGV G KPT+G +   G++    ++   G LA +  D L +   + G
Sbjct:   74 LAGIPIAHKDAFVTRGWRTTAGSKMLAGYAS-PFDATVVERLAEAGAVSLGKLNCDEFAMGSGNENSAYGPVRNPWDTQAVPGGSSGGSAAAVAARLVAAATGTDTGGSVRQPAALCGVSGIKPTYGTVSRYGIIAFGSSLDQAGPLAPSSRDLLELLDVMTG 235          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_BORBR (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Bordetella bronchiseptica GN=gatA PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.374e-18
Identity = 68/218 (31.19%), Postives = 97/218 (44.50%), Query Frame = 2
Query:   98 VAERFITAVR------ESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            +A R ++AV       +++     ++ F++ + E  L QA  +      G     L G+ IA KD      + TT G+K L        DA  V RL   GA+ +GK N  E   G+   N  YG  RNP+D   +               L   A G D GGSVR PAALCGV G KPT+G +   G++    ++   G LA +  D L +   + G
Sbjct:   20 LARRQVSAVELAQSGLDAAQAASGLNAFLHIDPELTLAQARAADAALAAGTA-GPLAGIPIAHKDAFVTRGWRTTAGSKMLAGYAS-PFDATVVERLAEAGAVSLGKLNCDEFAMGSGNENSAYGPVRNPWDTRAVPGGSSGGSAAAVAARLVAAATGTDTGGSVRQPAALCGVSGIKPTYGTVSRYGMIAFGSSLDQAGPLAPSSRDLLELLDVMTG 235          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_DECAR (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Dechloromonas aromatica (strain RCB) GN=gatA PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.713e-18
Identity = 63/204 (30.88%), Postives = 96/204 (47.06%), Query Frame = 2
Query:  128 ESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHK-VRPCTGDACCVMRLRL-CGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            E  NP +    F+  + E  L+ A ++  R   G     L G+ IA KD      + +T G+K L   V P   DA  + ++    G + +GKTNM E   G+S     +G  RNP+D  ++               L P A G D GGS+R PAALC + G KPT+G +   G++    ++   G +AA+ ED  ++   + G
Sbjct:   32 ERLNPTLNA--FVTVDREKSLQMARDADARIAAGTA-GPLTGIPIAQKDIFCAEGWLSTCGSKMLANFVSPY--DATVIRKMHAEAGLVSLGKTNMDEFAMGSSNETSFFGSVRNPWDTQRVPGGSSGGSAAAVAARLAPAATGTDTGGSIRQPAALCNLTGLKPTYGVVSRYGMIAFASSLDQGGPMAASAEDCALLLNTMVG 230          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_OCEIH (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Oceanobacillus iheyensis GN=gatA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.461e-18
Identity = 63/192 (32.81%), Postives = 89/192 (46.35%), Query Frame = 2
Query:  161 FINNNEEDILKQATE-STLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            F+  +EE  L++A E   L  K G    +L G+   +KD I      TT  +++L        DA  V +L+    + VGK NM E   G+S  N  Y   RNP++   +                    LG D GGS+R PAA CGVVG KPT+GR+   G++    ++  +G +  TVED   V   I G
Sbjct:   43 FLTLDEEKALEKARELDQLEDKTG----ILFGMPGGIKDNIVTKGLRTTCASQFLDNFNDPLYDATVVQKLQKENMVAVGKLNMDEFAMGSSNENSGYEPTRNPWNTEHVPGGSSGGSAAAVAAGEVLFTLGSDTGGSIRQPAAFCGVVGMKPTYGRVSRFGLVAFASSLDQIGPVTRTVEDNARVLEVIAG 230          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_LACDB (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC BAA-365) GN=gatA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.461e-18
Identity = 63/230 (27.39%), Postives = 111/230 (48.26%), Query Frame = 2
Query:   44 TVLDYSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            T+   +    SG ++   +A+  I  ++++     K++ FI  +E+   K A +     K       L GV IA+KD I  +   TT  +  L+   P   ++  V +L+   A ++GKTNM E   G+S    ++G  +NP++ +K+                   ALG D GGS+R PA+  G+ G KPT+GR+   G++    ++  +G+++  V+D+  V   I G
Sbjct:    7 TIDSLNDKLKSGAVSADQLAKDTIANIKKTDE---KINAFITVDED--AKPAEDLDFNNK-------LAGVPIAIKDNIITNGLKTTAASHILYNFEPVY-ESTVVAKLKAAQATIIGKTNMDEFAMGSSTETSYFGDTKNPWNLNKVPGGSSGGSAAAVASGEVVAALGSDTGGSIRQPASFNGIFGIKPTYGRVSRWGLIAFASSLDQIGVMSKRVKDSAEVLNVIAG 223          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: HYIN_RHIRD (Indoleacetamide hydrolase OS=Rhizobium radiobacter GN=tms2 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.744e-18
Identity = 62/185 (33.51%), Postives = 85/185 (45.95%), Query Frame = 2
Query:  245 LDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING------PLPSQQPTVSLPKVSF 781
            L G+ +  K  I    +PT+  T  L    P         RL   GA+     NMHEL  G +  N   G  RNP++P  I               L    +G D G SVR+PAALCGVVGF+PT GR P   ++P++ T    GI+A  V D +++   I+G      P+P +   + LP   F
Sbjct:   66 LCGIPLCFKANIATGVFPTSAATPALINHLPKIPSRVAE-RLFSAGALPGASGNMHELSFGITSNNYATGAVRNPWNPDLIPGGSSGGVAAAVASRLMLGGIGTDTGASVRLPAALCGVVGFRPTLGRYPGDRIIPVSPTRDTPGIIAQCVADVVILDRIISGTPERIPPVPLKGLRIGLPTTYF 249          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: HYIN_AGRT9 (Indoleacetamide hydrolase OS=Agrobacterium tumefaciens (strain 15955) GN=tms2 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.744e-18
Identity = 62/185 (33.51%), Postives = 85/185 (45.95%), Query Frame = 2
Query:  245 LDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING------PLPSQQPTVSLPKVSF 781
            L G+ +  K  I    +PT+  T  L    P         RL   GA+     NMHEL  G +  N   G  RNP++P  I               L    +G D G SVR+PAALCGVVGF+PT GR P   ++P++ T    GI+A  V D +++   I+G      P+P +   + LP   F
Sbjct:   66 LCGIPLCFKANIATGVFPTSAATPALINHLPKIPSRVAE-RLFSAGALPGASGNMHELSFGITSNNYATGAVRNPWNPDLIPGGSSGGVAAAVASRLMLGGIGTDTGASVRLPAALCGVVGFRPTLGRYPGDRIIPVSPTRDTPGIIAQCVADVVILDRIISGTPERIPPVPLKGLRIGLPTTYF 249          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: HYIN_AGRT4 (Indoleacetamide hydrolase OS=Agrobacterium tumefaciens (strain Ach5) GN=tms2 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.744e-18
Identity = 62/185 (33.51%), Postives = 85/185 (45.95%), Query Frame = 2
Query:  245 LDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING------PLPSQQPTVSLPKVSF 781
            L G+ +  K  I    +PT+  T  L    P         RL   GA+     NMHEL  G +  N   G  RNP++P  I               L    +G D G SVR+PAALCGVVGF+PT GR P   ++P++ T    GI+A  V D +++   I+G      P+P +   + LP   F
Sbjct:   66 LCGIPLCFKANIATGVFPTSAATPALINHLPKIPSRVAE-RLFSAGALPGASGNMHELSFGITSNNYATGAVRNPWNPDLIPGGSSGGVAAAVASRLMLGGIGTDTGASVRLPAALCGVVGFRPTLGRYPGDRIIPVSPTRDTPGIIAQCVADVVILDRIISGTPERIPPVPLKGLRIGLPTTYF 249          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_LACLA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Lactococcus lactis subsp. lactis GN=gatA PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.744e-18
Identity = 63/191 (32.98%), Postives = 91/191 (47.64%), Query Frame = 2
Query:  161 FINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            F+   EE  L+ A  + +  +   P  V DG+ IAVKD I      TT  +K L    P   +A    +L   G I +GK NM E   G SG N      +N +D +K+                  ++LG D GGS+R PAA  G+VG KPT+GR+   G++    ++  +G LA TVE+   +   I+G
Sbjct:   43 FLKITEEKALQDA--AAIDARGINPDVVTDGISIAVKDNIVTEGIETTAASKILGGWIP-PYNATVANKLSESGLITIGKLNMDEFAMGGSGENSSVKPTKNAWDQTKVPGGSSSGSAASVASGQVRLSLGSDTGGSIRQPAAFNGIVGLKPTYGRVSRFGLIAFASSLDQIGPLAPTVEENAQLLNVISG 230          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_BORPA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Bordetella parapertussis GN=gatA PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.744e-18
Identity = 58/163 (35.58%), Postives = 75/163 (46.01%), Query Frame = 2
Query:  245 LDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            L G+ IA KD      + TT G+K L        DA  V RL   GA+ +GK N  E   G+   N  YG  RNP+D   +               L   A G D GGSVR PAALCGV G KPT+G +   G++    ++   G LA +  D L +   + G
Sbjct:   74 LAGIPIAHKDAFVTRGWRTTAGSKMLAGYAS-PFDATVVERLAEAGAVSLGKLNCDEFAMGSGNENSAYGPVRNPWDTRAVPGGSSGGSAAAVAARLVAAATGTDTGGSVRQPAALCGVSGIKPTYGTVSRYGMIAFGSSLDQAGPLAPSSRDLLELLDVMTG 235          
The following BLAST results are available for this feature:
BLAST of FC878075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_BORPE4.374e-1835.58Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_BORBR4.374e-1831.19Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_DECAR5.713e-1830.88Glutamyl-tRNA(Gln) amidotransferase subunit A OS=D... [more]
GATA_OCEIH7.461e-1832.81Glutamyl-tRNA(Gln) amidotransferase subunit A OS=O... [more]
GATA_LACDB7.461e-1827.39Glutamyl-tRNA(Gln) amidotransferase subunit A OS=L... [more]
HYIN_RHIRD9.744e-1833.51Indoleacetamide hydrolase OS=Rhizobium radiobacter... [more]
HYIN_AGRT99.744e-1833.51Indoleacetamide hydrolase OS=Agrobacterium tumefac... [more]
HYIN_AGRT49.744e-1833.51Indoleacetamide hydrolase OS=Agrobacterium tumefac... [more]
GATA_LACLA9.744e-1832.98Glutamyl-tRNA(Gln) amidotransferase subunit A OS=L... [more]
GATA_BORPA9.744e-1835.58Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA35BB11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA35BB11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878075 ID=FC878075; Name=FC878075; organism=Citrus clementina; type=EST; length=849bp
TCTGCCTCTGTCTTCAGAAAAGCAGCCGTTTTTCCATCGCTGGACTGTAT
TAGATTATTCAAAAGCCTACAGTTCCGGAGATATTACTCCTCGTATGGTA
GCAGAGCGGTTTATAACCGCAGTACGTGAGTCTTCAAACCCTCCAATGAA
AATGTCATTCTTCATTAACAACAATGAAGAAGATATTCTAAAGCAAGCTA
CAGAGTCGACTCTTCGGTATAAAAAAGGAGAGCCAATATCGGTTCTAGAT
GGAGTCCTAATTGCAGTCAAGGATGAAATTGATTGTTCTCCTTACCCAAC
TACAGGAGGCACCAAGTGGTTGCATAAAGTTAGACCTTGCACAGGTGATG
CATGCTGCGTTATGCGCCTCAGATTGTGCGGCGCCATACTTGTTGGGAAA
ACTAATATGCATGAGCTCGGGGCTGGAACAAGTGGGATAAATCCTCATTA
TGGGGTCGCTAGAAATCCATACGACCCCAGCAAAATCACTGGGGGTTCTT
CTAGTGGATCAGCAGCAGTGGTGGCTGCAGGATTGTGCCCTGTCGCCCTT
GGTGTTGATGGAGGAGGATCCGTGCGGATGCCTGCAGCTCTCTGTGGTGT
TGTTGGTTTTAAGCCAACTTTCGGGCGCATACCTCTTTCTGGTGTTCTTC
CACTGAACTGGACAGTAGGAATGGTTGGAATTTTAGCAGCCACTGTAGAA
GATGCATTGGTTGTTTATGCAGCTATTAATGGTCCACTTCCTTCCCAACA
GCCCACTGTTTCATTGCCAAAAGTATCGTTCCCACTGCTGAAGTCTGCAA
CATCAATATCAGCCATCAAATTGGGCAAGTATGATGCGTGGTTCAACGA
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