FC878075

Overview
NameFC878075
Unique NameFC878075
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length849
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_THICR (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Thiomicrospira crunogena (strain XCL-2) GN=gatA PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.703e-17
Identity = 62/250 (24.80%), Postives = 114/250 (45.60%), Query Frame = 2
Query:   35 HRWTVLDYSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHK-VRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSF 781
            H  +V + S+   + +IT   + + ++  + +      +++ ++    E  ++ A ++     +G+   +L G+ +A KD        TT G+K L   + P   DA  V   R  G  ++GKTNM E   G+S  + +YG  +NP+D   +               L P+A G D GGS+R PA+ CG+ G KPT+G +   G++    +    G +  + E++  +   I G       ++  PK  +
Sbjct:    2 HTLSVKEMSEKLRNKEITSVALTQHYLDRIDQYDG---ELNAYVTVTPELAMEMARQADEMIAEGKG-GLLTGIPVAHKDIFCTLDVKTTCGSKMLDNFIAPY--DAKVVEASRALGMPILGKTNMDEFAMGSSSESSYYGATKNPWDLKAVPGGSSGGSAAVIAAGLAPLATGSDTGGSIRQPASFCGITGIKPTYGAVSRYGMIAYASSFDQGGPMTRSAEESAWLLDVIAGFDERDSTSLEQPKQDY 245          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_STRA3 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Streptococcus agalactiae serotype III GN=gatA PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.703e-17
Identity = 57/191 (29.84%), Postives = 93/191 (48.69%), Query Frame = 2
Query:  161 FINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            FI  +++  + QA E  +  K  +  +V+ G+ +AVKD I      TT  +K L+   P   DA  V +L     I++GK NM E   G S    ++    N +D SK+                  ++LG D GGS+R PA+  G+VG KPT+GR+   G+     ++  +G ++ TV++   +   I+G
Sbjct:   43 FITISDDMAIAQAKE--IDDKGIDADNVMSGIPLAVKDNISTKGILTTAASKMLYNYEPIF-DATAVEKLYAKDMIVIGKANMDEFAMGGSTETSYFKKTNNAWDHSKVPGGSSGGSAAAVASGQVRLSLGSDTGGSIRQPASFNGIVGMKPTYGRVSRFGLFAFGSSLDQIGPMSQTVKENAQLLTVISG 230          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_RICAH (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Rickettsia akari (strain Hartford) GN=gatA PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.703e-17
Identity = 71/271 (26.20%), Postives = 121/271 (44.65%), Query Frame = 2
Query:   35 HRWTVLDYSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSK-----ITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSA--TSISAIKLG 826
            ++ TV D  K   + D T + +    IT + +  N    ++ ++    +  LKQA  +   Y + +P   L+G+  A KD        TT  +  L    P   ++     +   G +++GKTNM E   G++ I   +G   +P+  +      +               +   ALG D GGSVR PA+  G+VGFKPT+GR    G++    ++   GI   +V D+ ++  A+ G       ++   K   P L+SA  +S+  IK+G
Sbjct:    5 NKLTVADSIKGLKNKDFTSKELVNAHITQIEKHRN----LNAYVTETFDLALKQAEAADQNYAQNQP-RTLEGIPFAAKDLFCTKGIRTTACSNILKNFVP-NYESSVTQNIFDKGGVMLGKTNMDEFAMGSANITSCFGNVISPWKANDDNADLVPGGSSGGSAAAVSGFMASAALGSDTGGSVRQPASFTGLVGFKPTYGRCSRYGMVSFASSLDQAGIFTRSVLDSSIMLEAMMGFDAKDSTSI---KAEVPELQSAIGSSMKNIKIG 266          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_RHORT (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=gatA PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.703e-17
Identity = 68/249 (27.31%), Postives = 105/249 (42.17%), Query Frame = 2
Query:   44 TVLDYSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPY-----DPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING--PLPSQQPTVSLP 769
            T+ +   A + G  TP  +    +  +         ++ FI    +    QA  S  R + G+    ++G+ I +KD        TT G+K L    P   ++     L   GA+++GKTN+ E   G+S      G   NP+     D   +               L   A G D GGS+R PAA CG+VG KPT+GR    GV+    ++   G +  TV DA ++  A+ G  P+      V +P
Sbjct:   11 TIAEARDAMAKGAFTPLELTNAHLARMEAGRG----LNAFITETPDLARMQAERSGERLRAGKA-GPMEGIPIGIKDLFCTEGVRTTAGSKILDGFVP-PYESTVSANLAKAGAVMLGKTNLDEFAMGSSNKTSASGPVINPWTRTDDDEQLVPGGSSGGSAAAVAGRLAMAATGTDTGGSIRQPAAFCGLVGLKPTYGRCSRWGVVAFASSLDQAGPMTRTVRDAAIMLKAMAGHDPMDGTSAPVEVP 253          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_STRP6 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Streptococcus pyogenes serotype M6 GN=gatA PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.836e-17
Identity = 57/181 (31.49%), Postives = 89/181 (49.17%), Query Frame = 2
Query:  161 FINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVED 703
            FI  +EE  L+QA  + +  K  +  +++ G+ +AVKD I      TT  +K L+   P   DA  V        I++GKTNM E   G S    ++   +N +D +K+                  ++LG D GGS+R PAA  GVVG KPT+G +   G++    ++  +G  A TV++
Sbjct:   43 FITVSEEAALRQA--AAIDAKGIDADNLMSGIPLAVKDNISTKGILTTAASKMLYNYEPIF-DATSVANAYAKDMIVIGKTNMDEFAMGGSTETSYFKKTKNAWDHTKVPGGSSGGSATAVASGQVRLSLGSDTGGSIRQPAAFNGVVGLKPTYGTVSRYGLIAFGSSLDQIGPFAPTVKE 220          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_ORITI (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Orientia tsutsugamushi (strain Ikeda) GN=gatA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.316e-17
Identity = 64/209 (30.62%), Postives = 100/209 (47.85%), Query Frame = 2
Query:  245 LDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPY-----DPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSFPLLKSATS--ISAIKLG-KYDAWFN 847
            ++G+ +++KD        TT  +K L    P   DA    ++   G I++GK NM E   G++ IN ++G   NP+     D                   +   ALG D GGSVR PA+  G VG KP++GR    G++  + ++   GI+  TVEDA ++   + G    ++ + SL  V  P L+SA +  I  +K+G  YD   N
Sbjct:   70 IEGIPVSIKDLFCTKGILTTAASKMLQNFTPVY-DATVYSKIINAGGIMLGKGNMDEFAMGSANINSYFGNVINPWKAENDDIDLTPGGSSGGSSAAVAAFMAMAALGSDTGGSVRQPASYTGTVGIKPSYGRCSRWGMIAFSCSLDQAGIITRTVEDAAIMLETMMG--YDEKDSTSL-NVEVPNLRSAVNQPIKGMKIGIPYDLMEN 274          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_DEHSC (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Dehalococcoides sp. (strain CBDB1) GN=gatA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.316e-17
Identity = 63/202 (31.19%), Postives = 94/202 (46.53%), Query Frame = 2
Query:  128 ESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            E   P +K   F+    E  L QA  +    K+G+ I  L G+ +A+KD +      TT  +K L    P   +A  V +L   GA+L+GKTNM E   G+S  N  Y   RNP++  K+                   +LG D GGS+R PA+ C V G+KP++G +   G++    ++  +G       D  +V  AI G
Sbjct:   35 EKLEPEIKA--FMTVCPETALSQAEAADKAIKQGD-IRPLTGIPMALKDVLCTKGIRTTCSSKMLENFVP-PYNAHVVDKLAKEGAVLLGKTNMDEFAMGSSTENSAYFTTRNPWNTDKVPGGSSGGSAACVAASEAVFSLGSDTGGSIRQPASFCSVTGYKPSYGMVSRYGLVAFASSLDQIGPFTKDAMDCALVMNAIAG 232          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_DEHSB (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Dehalococcoides sp. (strain BAV1) GN=gatA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.316e-17
Identity = 63/202 (31.19%), Postives = 94/202 (46.53%), Query Frame = 2
Query:  128 ESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPYDPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAING 733
            E   P +K   F+    E  L QA  +    K+G+ I  L G+ +A+KD +      TT  +K L    P   +A  V +L   GA+L+GKTNM E   G+S  N  Y   RNP++  K+                   +LG D GGS+R PA+ C V G+KP++G +   G++    ++  +G       D  +V  AI G
Sbjct:   35 EKLEPEIKA--FMTVCPETALSQAEAADKAIKQGD-IRPLTGIPMALKDVLCTKGIRTTCSSKMLENFVP-PYNAHVVDKLAKEGAVLLGKTNMDEFAMGSSTENSAYFTTRNPWNTDKVPGGSSGGSAACVAASEAVFSLGSDTGGSIRQPASFCSVTGYKPSYGMVSRYGLVAFASSLDQIGPFTKDAMDCALVMNAIAG 232          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_METPB (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=gatA PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.249e-17
Identity = 66/251 (26.29%), Postives = 110/251 (43.82%), Query Frame = 2
Query:   44 TVLDYSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPY-----DPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSF 781
            T+ +      + D + R +A+  + A+  +      ++ +I    +  LK A  S  +  KGE    L+G+ + +KD        TT G+K L    P   ++    +L   GA+++GK N+ E   G+S     YG   +P+     D   +               LC  A   D GGS+R PAA  G VG KPT+GR    G++    ++   G +A TV+D  ++  ++ G  P    +V +P   F
Sbjct:    8 TLAEARDGLKAKDFSAREIAQAHLDAIERAK----ALNAYIVATPDRALKMADVSDEKIAKGEA-RPLEGLPLGIKDLFATQGVHTTAGSKILEGFEPHY-ESNVSSQLWRDGAVMLGKLNLDEFAMGSSNETSAYGKTISPWRRQGSDTPLVPGGSSGGSAAAVAAHLCLGATATDTGGSIRQPAAFTGTVGIKPTYGRCSRWGIIAYASSLDQAGPIARTVQDCAILLGSMAGHDPRDTTSVDVPVPDF 252          
BLAST of FC878075 vs. ExPASy Swiss-Prot
Match: GATA_METC4 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methylobacterium chloromethanicum (strain CM4 / NCIMB 13688) GN=gatA PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.249e-17
Identity = 66/251 (26.29%), Postives = 110/251 (43.82%), Query Frame = 2
Query:   44 TVLDYSKAYSSGDITPRMVAERFITAVRESSNPPMKMSFFINNNEEDILKQATESTLRYKKGEPISVLDGVLIAVKDEIDCSPYPTTGGTKWLHKVRPCTGDACCVMRLRLCGAILVGKTNMHELGAGTSGINPHYGVARNPY-----DPSKITXXXXXXXXXXXXXXLCPVALGVDGGGSVRMPAALCGVVGFKPTFGRIPLSGVLPLNWTVGMVGILAATVEDALVVYAAINGPLPSQQPTVSLPKVSF 781
            T+ +      + D + R +A+  + A+  +      ++ +I    +  LK A  S  +  KGE    L+G+ + +KD        TT G+K L    P   ++    +L   GA+++GK N+ E   G+S     YG   +P+     D   +               LC  A   D GGS+R PAA  G VG KPT+GR    G++    ++   G +A TV+D  ++  ++ G  P    +V +P   F
Sbjct:    8 TLAEARDGLKAKDFSAREIAQAHLDAIDRAK----ALNAYIVATPDRALKMAEVSDQKIAKGEA-RPLEGLPLGIKDLFATQGVHTTAGSKILEGFEPHY-ESNVSSQLWRDGAVMLGKLNLDEFAMGSSNETSAYGKTISPWRRQGSDAPLVPGGSSGGSAAAVAAHLCLGATATDTGGSIRQPAAFTGTVGIKPTYGRCSRWGIIAYASSLDQAGPIARTVQDCAILLGSMAGHDPRDTTSVDMPVPDF 252          
The following BLAST results are available for this feature:
BLAST of FC878075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_THICR3.703e-1724.80Glutamyl-tRNA(Gln) amidotransferase subunit A OS=T... [more]
GATA_STRA33.703e-1729.84Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_RICAH3.703e-1726.20Glutamyl-tRNA(Gln) amidotransferase subunit A OS=R... [more]
GATA_RHORT3.703e-1727.31Glutamyl-tRNA(Gln) amidotransferase subunit A OS=R... [more]
GATA_STRP64.836e-1731.49Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_ORITI6.316e-1730.62Glutamyl-tRNA(Gln) amidotransferase subunit A OS=O... [more]
GATA_DEHSC6.316e-1731.19Glutamyl-tRNA(Gln) amidotransferase subunit A OS=D... [more]
GATA_DEHSB6.316e-1731.19Glutamyl-tRNA(Gln) amidotransferase subunit A OS=D... [more]
GATA_METPB8.249e-1726.29Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_METC48.249e-1726.29Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA35BB11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA35BB11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878075 ID=FC878075; Name=FC878075; organism=Citrus clementina; type=EST; length=849bp
TCTGCCTCTGTCTTCAGAAAAGCAGCCGTTTTTCCATCGCTGGACTGTAT
TAGATTATTCAAAAGCCTACAGTTCCGGAGATATTACTCCTCGTATGGTA
GCAGAGCGGTTTATAACCGCAGTACGTGAGTCTTCAAACCCTCCAATGAA
AATGTCATTCTTCATTAACAACAATGAAGAAGATATTCTAAAGCAAGCTA
CAGAGTCGACTCTTCGGTATAAAAAAGGAGAGCCAATATCGGTTCTAGAT
GGAGTCCTAATTGCAGTCAAGGATGAAATTGATTGTTCTCCTTACCCAAC
TACAGGAGGCACCAAGTGGTTGCATAAAGTTAGACCTTGCACAGGTGATG
CATGCTGCGTTATGCGCCTCAGATTGTGCGGCGCCATACTTGTTGGGAAA
ACTAATATGCATGAGCTCGGGGCTGGAACAAGTGGGATAAATCCTCATTA
TGGGGTCGCTAGAAATCCATACGACCCCAGCAAAATCACTGGGGGTTCTT
CTAGTGGATCAGCAGCAGTGGTGGCTGCAGGATTGTGCCCTGTCGCCCTT
GGTGTTGATGGAGGAGGATCCGTGCGGATGCCTGCAGCTCTCTGTGGTGT
TGTTGGTTTTAAGCCAACTTTCGGGCGCATACCTCTTTCTGGTGTTCTTC
CACTGAACTGGACAGTAGGAATGGTTGGAATTTTAGCAGCCACTGTAGAA
GATGCATTGGTTGTTTATGCAGCTATTAATGGTCCACTTCCTTCCCAACA
GCCCACTGTTTCATTGCCAAAAGTATCGTTCCCACTGCTGAAGTCTGCAA
CATCAATATCAGCCATCAAATTGGGCAAGTATGATGCGTGGTTCAACGA
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