FC878125

Overview
NameFC878125
Unique NameFC878125
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length819
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878125 vs. ExPASy Swiss-Prot
Match: WRK52_ARATH (Probable WRKY transcription factor 52 OS=Arabidopsis thaliana GN=WRKY52 PE=2 SV=3)

HSP 1 Score: 99.3673 bits (246), Expect = 2.602e-20
Identity = 46/89 (51.69%), Postives = 62/89 (69.66%), Query Frame = 3
Query:  558 KNQLKRVCHVPAEGLSSDVWAWRKYGQKPIKGSPYPRGYYRCSS--SKGCLARKQVERNRSDPGMFIVTYTAEHNHPAPTHRNSLAGST 818
            ++++K+V  +PA     D+W WRKYGQK I GS +PRGYYRC+   + GC A KQV+R+ +D  M  +TY +EHNHP PT R +LA ST
Sbjct: 1193 ESRVKKVVSIPAID-EGDLWTWRKYGQKDILGSRFPRGYYRCAYKFTHGCKATKQVQRSETDSNMLAITYLSEHNHPRPTKRKALADST 1280          
BLAST of FC878125 vs. ExPASy Swiss-Prot
Match: WRKY7_ARATH (Probable WRKY transcription factor 7 OS=Arabidopsis thaliana GN=WRKY7 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.399e-20
Identity = 47/79 (59.49%), Postives = 57/79 (72.15%), Query Frame = 3
Query:  558 KNQLKRVCHVPAEG-----LSSDVWAWRKYGQKPIKGSPYPRGYYRCSSSKGCLARKQVERNRSDPGMFIVTYTAEHNH 779
            K+++KRV  VPA       + SD ++WRKYGQKPIKGSP+PRGYY+CSS +GC ARK VER   D  M IVTY  +HNH
Sbjct:  260 KSRVKRVIRVPAVSSKMADIPSDEFSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDAMMLIVTYEGDHNH 338          
BLAST of FC878125 vs. ExPASy Swiss-Prot
Match: WRK17_ARATH (Probable WRKY transcription factor 17 OS=Arabidopsis thaliana GN=WRKY17 PE=1 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 1.291e-19
Identity = 47/91 (51.65%), Postives = 58/91 (63.74%), Query Frame = 3
Query:  558 KNQLKRVCHVPAEG-----LSSDVWAWRKYGQKPIKGSPYPRGYYRCSSSKGCLARKQVERNRSDPGMFIVTYTAEHNHPAPTHRNSLAGS 815
            KN++KR   VPA       +  D ++WRKYGQKPIKGSP+PRGYY+CS+ +GC ARK VER   D  M IVTY  EH H   T +  +  S
Sbjct:  222 KNRMKRTVRVPAVSAKIADIPPDEYSWRKYGQKPIKGSPHPRGYYKCSTFRGCPARKHVERALDDSTMLIVTYEGEHRHHQSTMQEHVTPS 312          
BLAST of FC878125 vs. ExPASy Swiss-Prot
Match: WRKY1_MAIZE (Protein WRKY1 OS=Zea mays PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.203e-19
Identity = 45/79 (56.96%), Postives = 56/79 (70.89%), Query Frame = 3
Query:  558 KNQLKRVCHVPA-----EGLSSDVWAWRKYGQKPIKGSPYPRGYYRCSSSKGCLARKQVERNRSDPGMFIVTYTAEHNH 779
            K +++R   VPA       + +D ++WRKYGQKPIKGSP+PRGYY+CSS +GC ARK VER   DP M IVTY  +HNH
Sbjct:  311 KLRIRRSIKVPAISNKVADIPADEFSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERCVDDPSMLIVTYEGDHNH 389          
BLAST of FC878125 vs. ExPASy Swiss-Prot
Match: WRK15_ARATH (Probable WRKY transcription factor 15 OS=Arabidopsis thaliana GN=WRKY15 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 8.371e-19
Identity = 44/79 (55.70%), Postives = 54/79 (68.35%), Query Frame = 3
Query:  558 KNQLKRVCHVPA-----EGLSSDVWAWRKYGQKPIKGSPYPRGYYRCSSSKGCLARKQVERNRSDPGMFIVTYTAEHNH 779
            K + +R+  VPA       +  D ++WRKYGQKPIKGSP+PRGYY+CSS +GC ARK VER   D  M IVTY  +HNH
Sbjct:  219 KIKQRRIIRVPAISAKMSDVPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERAADDSSMLIVTYEGDHNH 297          
BLAST of FC878125 vs. ExPASy Swiss-Prot
Match: WRK74_ARATH (Probable WRKY transcription factor 74 OS=Arabidopsis thaliana GN=WRKY74 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.865e-18
Identity = 45/79 (56.96%), Postives = 54/79 (68.35%), Query Frame = 3
Query:  558 KNQLKRVCHVPA-----EGLSSDVWAWRKYGQKPIKGSPYPRGYYRCSSSKGCLARKQVERNRSDPGMFIVTYTAEHNH 779
            K ++KR   VPA       +  D ++WRKYGQKPIKGSP+PRGYY+CSS +GC ARK VER   +  M IVTY  EHNH
Sbjct:  241 KLRVKRSIKVPAISNKIADIPPDEYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERCVEETSMLIVTYEGEHNH 319          
BLAST of FC878125 vs. ExPASy Swiss-Prot
Match: WRK39_ARATH (Probable WRKY transcription factor 39 OS=Arabidopsis thaliana GN=WRKY39 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.865e-18
Identity = 45/79 (56.96%), Postives = 54/79 (68.35%), Query Frame = 3
Query:  558 KNQLKRVCHVPA-----EGLSSDVWAWRKYGQKPIKGSPYPRGYYRCSSSKGCLARKQVERNRSDPGMFIVTYTAEHNH 779
            K ++KR   VPA       +  D ++WRKYGQKPIKGSP+PRGYY+CSS +GC ARK VER   +  M IVTY  EHNH
Sbjct:  241 KLRVKRSIKVPAISNKIADIPPDEYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERCIDETSMLIVTYEGEHNH 319          
BLAST of FC878125 vs. ExPASy Swiss-Prot
Match: WRKY8_ARATH (Probable WRKY transcription factor 8 OS=Arabidopsis thaliana GN=WRKY8 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.977e-16
Identity = 36/65 (55.38%), Postives = 48/65 (73.85%), Query Frame = 3
Query:  609 DVWAWRKYGQKPIKGSPYPRGYYRCSSSKGCLARKQVERNRSDPGMFIVTYTAEHNHPAPTHRNS 803
            D + WRKYGQK +K SPYPR YYRC++ K C  +K+VER+  DP + I TY ++HNHP PT+R +
Sbjct:  184 DGYRWRKYGQKAVKNSPYPRSYYRCTTQK-CNVKKRVERSYQDPTVVITTYESQHNHPIPTNRRT 247          
BLAST of FC878125 vs. ExPASy Swiss-Prot
Match: WRK28_ARATH (Probable WRKY transcription factor 28 OS=Arabidopsis thaliana GN=WRKY28 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.520e-15
Identity = 35/62 (56.45%), Postives = 45/62 (72.58%), Query Frame = 3
Query:  609 DVWAWRKYGQKPIKGSPYPRGYYRCSSSKGCLARKQVERNRSDPGMFIVTYTAEHNHPAPTH 794
            D + WRKYGQK +K SPYPR YYRC++ K C  +K+VER+  DP + I TY  +HNHP PT+
Sbjct:  173 DGYRWRKYGQKAVKNSPYPRSYYRCTTQK-CNVKKRVERSFQDPTVVITTYEGQHNHPIPTN 233          
BLAST of FC878125 vs. ExPASy Swiss-Prot
Match: WRK71_ARATH (Probable WRKY transcription factor 71 OS=Arabidopsis thaliana GN=WRKY71 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.333e-15
Identity = 34/61 (55.74%), Postives = 44/61 (72.13%), Query Frame = 3
Query:  609 DVWAWRKYGQKPIKGSPYPRGYYRCSSSKGCLARKQVERNRSDPGMFIVTYTAEHNHPAPT 791
            D + WRKYGQK +K SPYPR YYRC++ K C  +K+VER+  DP + I TY  +HNHP P+
Sbjct:  137 DGYRWRKYGQKAVKNSPYPRSYYRCTTQK-CNVKKRVERSFQDPSIVITTYEGKHNHPIPS 196          
The following BLAST results are available for this feature:
BLAST of FC878125 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
WRK52_ARATH2.602e-2051.69Probable WRKY transcription factor 52 OS=Arabidops... [more]
WRKY7_ARATH3.399e-2059.49Probable WRKY transcription factor 7 OS=Arabidopsi... [more]
WRK17_ARATH1.291e-1951.65Probable WRKY transcription factor 17 OS=Arabidops... [more]
WRKY1_MAIZE2.203e-1956.96Protein WRKY1 OS=Zea mays PE=1 SV=1[more]
WRK15_ARATH8.371e-1955.70Probable WRKY transcription factor 15 OS=Arabidops... [more]
WRK74_ARATH1.865e-1856.96Probable WRKY transcription factor 74 OS=Arabidops... [more]
WRK39_ARATH1.865e-1856.96Probable WRKY transcription factor 39 OS=Arabidops... [more]
WRKY8_ARATH2.977e-1655.38Probable WRKY transcription factor 8 OS=Arabidopsi... [more]
WRK28_ARATH2.520e-1556.45Probable WRKY transcription factor 28 OS=Arabidops... [more]
WRK71_ARATH7.333e-1555.74Probable WRKY transcription factor 71 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA88DH08RM1 IVIA1 Citrus clementina cDNA clone IC0AAA88DH08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878125 ID=FC878125; Name=FC878125; organism=Citrus clementina; type=EST; length=819bp
TCATAAGTCAGCGCCTTCTTTTGTCTCTGTCTCTTTCCCTTTTCCTTTCT
CTTAACAGAAGTACCAGACGAGAGGGTACAGATTCACAGCGCTTTTGTCT
CTTGAAGGCTAGCGAAGAGCCATGGAAGTTGACTGGGATCTGCATGCGGT
GGTCAGAGGCTGCAACAGCTCCGTTAACGCCACCGTTACAACAACTACAG
CCACCACCACAAGTACCACCACAAGTTTCAAGGATGATTTAGATACTACT
AATTCAATCTTGGTTTTCGGTTTCTCCATTTAGCCGTGAACAAACCAGTG
GTCATCTTTTCACCTTGGCCGATCCTTTCGAAGCAAGAAATGCTATTGAA
GAGCTGCATGAACTTTATAAGCCATTCTTTCCCAAATCTCCTCAGCCTAT
TTCTCCCAAAAGTAGTCAACCCATCTCGTCTTCTATTTCTTCTATCAATT
CATCATCATCAAAGGAACAGACTCAGTTCAAACAGCAGCAGCCTAATAAT
AAGCAGTCTCATGCTAGTTCTGTCACTAGTTCCACAACTCCTCGAACCAA
AAGAAGAAAGAATCAGCTCAAGAGAGTTTGTCATGTCCCAGCTGAAGGTC
TCTCTTCCGACGTTTGGGCTTGGAGAAAATATGGCCAAAAACCCATTAAA
GGCTCCCCCTATCCAAGGGGTTATTACAGATGTAGCAGTTCAAAGGGGTG
CTTGGCCCGGAAACAAGTGGAGCGAAACAGATCCGACCCCGGTATGTTCA
TAGTAACATATACGGCAGAGCACAACCACCCAGCTCCCACTCACAGAAAC
TCACTCGCCGGAAGCACCC
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