FC878130

Overview
NameFC878130
Unique NameFC878130
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length809
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_CENSY (Ornithine carbamoyltransferase OS=Cenarchaeum symbiosum GN=argF PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.218e-38
Identity = 85/188 (45.21%), Postives = 115/188 (61.17%), Query Frame = 1
Query:  244 KAEQTDFLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACPKGF 807
            K    D L  ++ D+  I+ I++ A  +K   K G     P  G+T++M+F KPS RTRVSF  G   LGG AIYL P D+Q+ + E   D AR L  Y D+I+ARVFGH+ I ++A  A+VPVINGL+D  HPCQI+AD +TI E  GRL+G +  ++GDGNNV +S L   + +      A P  F
Sbjct:    2 KIRSKDLLTGAELDRKEILGIIESAIRLK---KGGRSKAHPLDGRTLAMVFQKPSTRTRVSFAAGMFQLGGEAIYLPPGDMQLSRGETIPDTARALSGYVDVIVARVFGHETIEEIAASASVPVINGLSDTFHPCQILADLMTIKERKGRLKGLRAAWIGDGNNVCNSLLYGCAAVGIDISVATPAVF 186          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_SULDN (Ornithine carbamoyltransferase OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251) GN=argF PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 2.078e-38
Identity = 83/182 (45.60%), Postives = 116/182 (63.74%), Query Frame = 1
Query:  262 FLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACPKGF 807
            FL + DF K  I++I++   E+K  LKS        K +T++MIF K S RTRVSFETG   LGGHA++L   DI +G+ E  +D ARV+    D+IM R F H  I + A ++ VPVINGLTD  HP Q++AD +T++E+ G  +     YVGDGNN+ HSW+++A+ + F    A PKG+
Sbjct:    8 FLTLRDFSKDEILEIINIGLEIKKSLKSAVCKH-ELKNQTLAMIFEKSSTRTRVSFETGMFQLGGHALFLSNRDIHLGRGEPVKDTARVISGMCDMIMIRTFEHSRIEEFASYSKVPVINGLTDSYHPVQLLADYMTLVEY-GMEKNIIAAYVGDGNNMTHSWMMLAAKLGFELRVATPKGY 187          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_BACHK (Ornithine carbamoyltransferase OS=Bacillus thuringiensis subsp. konkukian GN=argF PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 2.078e-38
Identity = 83/189 (43.92%), Postives = 115/189 (60.85%), Query Frame = 1
Query:  241 PKAEQTDFLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACPKGF 807
            PK    D L + +  K  I+ +++ A  +K   K+     L  +GK + +IF K S RTRVSFE G   LGGH ++L   ++QMG+ E   D A+VL +Y D IM R F H D+ +LAK +++PVINGLTD +HPCQ +AD +TI E     +G K+ YVGDGNNV HS LL ++ +  H   A P G+
Sbjct:    7 PKLNTKDLLTLEELTKEEIISLIEFAIHLK---KNKQEPLL--QGKILGLIFDKHSTRTRVSFEAGMVQLGGHGMFLSGKEMQMGRGETVSDTAKVLSQYIDGIMIRTFSHADVEELAKESSIPVINGLTDDHHPCQALADLMTIYEETNTFKGIKLAYVGDGNNVCHSLLLASAKVGMHMTVATPVGY 190          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_BACC1 (Ornithine carbamoyltransferase OS=Bacillus cereus (strain ATCC 10987) GN=argF PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 2.078e-38
Identity = 83/189 (43.92%), Postives = 116/189 (61.38%), Query Frame = 1
Query:  241 PKAEQTDFLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACPKGF 807
            PK    D L + +  K  I+ +++ A  +K   K+     L  +GK + +IF K S RTRVSFE G   LGGH ++L   ++QMG+ E   D A+VL +Y D IM R F H D+ +LAK +++PVINGLTD +HPCQ +AD +TI E +   +G K+ YVGDGNNV HS LL ++ +  H   A P G+
Sbjct:    7 PKLNTKDLLTLEELTKEEIISLIEFAIYLK---KNKQEPLL--QGKILGLIFDKHSTRTRVSFEAGMVQLGGHGMFLSGKEMQMGRGETVSDTAKVLSQYIDGIMIRTFSHADVEELAKESSIPVINGLTDDHHPCQALADLMTIYEEINTFKGIKLAYVGDGNNVCHSLLLASAKVGMHMTVATPIGY 190          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: PTC_LISMO (Putrescine carbamoyltransferase OS=Listeria monocytogenes GN=ptcA PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.545e-38
Identity = 85/189 (44.97%), Postives = 119/189 (62.96%), Query Frame = 1
Query:  250 EQTDFLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHV---GRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACPKGF 807
            ++ DF+   DF K  I+ +++   ++K  +K+G    L  K KT+ MIF + S RTRVSFET  + LGGHA YL P  IQ+G  E   D A+VL R  DI+MARV  HQ +++LA  A +PVING++DYNHP Q + DA+T+ EH+    ++E  K+V+VGD   V  S + MA+ +   FV   PKGF
Sbjct:    3 KKRDFIDTKDFSKEEILFMIEIGRKMKESIKNGHYPQL-LKHKTLGMIFEQSSTRTRVSFETAMTQLGGHAQYLAPGQIQLGGHESVGDTAKVLSRLVDILMARVERHQTVVELANTAAIPVINGMSDYNHPTQELGDAITMFEHLPKGKKIEDCKIVFVGDATQVCASTMFMATKLGMDFVQFGPKGF 190          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: PTC_LISMF (Putrescine carbamoyltransferase OS=Listeria monocytogenes serotype 4b (strain F2365) GN=ptcA PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.545e-38
Identity = 85/189 (44.97%), Postives = 119/189 (62.96%), Query Frame = 1
Query:  250 EQTDFLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHV---GRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACPKGF 807
            ++ DF+   DF K  I+ +++   ++K  +K+G    L  K KT+ MIF + S RTRVSFET  + LGGHA YL P  IQ+G  E   D A+VL R  DI+MARV  HQ +++LA  A +PVING++DYNHP Q + DA+T+ EH+    ++E  K+V+VGD   V  S + MA+ +   FV   PKGF
Sbjct:    3 KKRDFIDTKDFSKEEILFMIEIGRKMKESIKNGHYPQL-LKHKTLGMIFEQSSTRTRVSFETAMTQLGGHAQYLAPGQIQLGGHESVGDTAKVLSRLVDILMARVERHQTVVELANTAAIPVINGMSDYNHPTQELGDAITMFEHLPKGKKIEDCKIVFVGDATQVCASTMFMATKLGMDFVQFGPKGF 190          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: PTC_LISMC (Putrescine carbamoyltransferase OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=ptcA PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.545e-38
Identity = 85/189 (44.97%), Postives = 119/189 (62.96%), Query Frame = 1
Query:  250 EQTDFLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHV---GRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACPKGF 807
            ++ DF+   DF K  I+ +++   ++K  +K+G    L  K KT+ MIF + S RTRVSFET  + LGGHA YL P  IQ+G  E   D A+VL R  DI+MARV  HQ +++LA  A +PVING++DYNHP Q + DA+T+ EH+    ++E  K+V+VGD   V  S + MA+ +   FV   PKGF
Sbjct:    3 KKRDFIDTKDFSKEEILFMIEIGRKMKESIKNGHYPQL-LKHKTLGMIFEQSSTRTRVSFETAMTQLGGHAQYLAPGQIQLGGHESVGDTAKVLSRLVDILMARVERHQTVVELANTAAIPVINGMSDYNHPTQELGDAITMFEHLPKGKKIEDCKIVFVGDATQVCASTMFMATKLGMDFVQFGPKGF 190          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_PSYWF (Ornithine carbamoyltransferase OS=Psychrobacter sp. (strain PRwf-1) GN=argF PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.545e-38
Identity = 79/182 (43.41%), Postives = 114/182 (62.64%), Query Frame = 1
Query:  262 FLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACPKGF 807
            FL + D   A +  ++ RA+E++ +  +G+  + PF G+T+ MIF K S RTR+SFETG    GGHAI+L P D Q+G+ E   D+ARV+    DIIM R F H+ +   A++++VP+IN LTD  HPCQ++AD  T  EH G ++   V +VGDGNN+  S++  A+   F    A P GF
Sbjct:    6 FLTLLDLSPAELEALIKRASELRKMQHAGE-VYQPFVGRTLGMIFEKSSTRTRISFETGMGQFGGHAIFLSPKDTQLGRGEPIEDSARVISSMVDIIMIRTFEHEKVEKFAQYSSVPIINALTDDFHPCQLLADMQTFYEHRGSIKDKIVTWVGDGNNMCSSFMAAANQFGFELRVAAPYGF 186          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_BACCR (Ornithine carbamoyltransferase OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=argF PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.545e-38
Identity = 83/189 (43.92%), Postives = 115/189 (60.85%), Query Frame = 1
Query:  241 PKAEQTDFLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACPKGF 807
            PK    D L + +  K  I+ +++ A  +K   K+     L  +GK + +IF K S RTRVSFE G   LGGH ++L   ++QMG+ E   D A+VL +Y D IM R F H D+ +LAK +++PVINGLTD +HPCQ +AD +TI E     +G K+ YVGDGNNV HS LL ++ +  H   A P G+
Sbjct:    7 PKLNTKDLLTLEELTKEEIISLIEFAIYLK---KNKQEPLL--QGKILGLIFDKHSTRTRVSFEAGMVQLGGHGMFLSGKEMQMGRGETVSDTAKVLSQYIDGIMIRTFSHADVEELAKESSIPVINGLTDDHHPCQALADLMTIYEETNTFKGIKLAYVGDGNNVCHSLLLASAKVGMHMTVATPVGY 190          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_RALPJ (Ornithine carbamoyltransferase OS=Ralstonia pickettii (strain 12J) GN=arcB PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 4.630e-38
Identity = 81/189 (42.86%), Postives = 116/189 (61.38%), Query Frame = 1
Query:  241 PKAEQTDFLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACPKGF 807
            P +    +L   DF       +LDR+A +KA  K+ + ++ P   +T++MIF K S RTR+SFE G   LGGHA++L   D Q+G+ E   DAA+V+ R  DIIM R FG + I   A  + VPVINGLT+  HPCQ++AD  T IE  G ++G  V +VGD NN+ ++W+  A ++ F F  + PKG+
Sbjct:    3 PPSSIKHYLQFKDFSLEEYEYLLDRSAILKAKFKNYE-TWHPLHDRTLAMIFEKNSTRTRLSFEAGIHQLGGHAVFLNTRDSQLGRGEPIEDAAQVISRMTDIIMIRTFGQEIIERFAAHSRVPVINGLTNEYHPCQVLADIFTFIEQRGPIKGKTVTWVGDANNMAYTWVQAAEILGFRFHFSAPKGY 190          
The following BLAST results are available for this feature:
BLAST of FC878130 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
OTC_CENSY1.218e-3845.21Ornithine carbamoyltransferase OS=Cenarchaeum symb... [more]
OTC_SULDN2.078e-3845.60Ornithine carbamoyltransferase OS=Sulfurimonas den... [more]
OTC_BACHK2.078e-3843.92Ornithine carbamoyltransferase OS=Bacillus thuring... [more]
OTC_BACC12.078e-3843.92Ornithine carbamoyltransferase OS=Bacillus cereus ... [more]
PTC_LISMO3.545e-3844.97Putrescine carbamoyltransferase OS=Listeria monocy... [more]
PTC_LISMF3.545e-3844.97Putrescine carbamoyltransferase OS=Listeria monocy... [more]
PTC_LISMC3.545e-3844.97Putrescine carbamoyltransferase OS=Listeria monocy... [more]
OTC_PSYWF3.545e-3843.41Ornithine carbamoyltransferase OS=Psychrobacter sp... [more]
OTC_BACCR3.545e-3843.92Ornithine carbamoyltransferase OS=Bacillus cereus ... [more]
OTC_RALPJ4.630e-3842.86Ornithine carbamoyltransferase OS=Ralstonia picket... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ12YE24RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ12YE24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878130 ID=FC878130; Name=FC878130; organism=Citrus clementina; type=EST; length=809bp
GCTTGTTACCAGTTCCCACCAAAATCAATGGCGGCGATTTCAAGTTGCTG
TACATATCGATCGGGCAAAATGCCTCTATCCGCTTCTTCTTCTTCTTCTT
TCTCCGGAAAGTTTCTCCCGAAACAATCGCGATTTCCTGCCACGTCGGCG
TCTGCTGCCCTGACATTTCCGGTCCTCCGAAGAAGCATCACGTGCCAGGC
ATCCTCGGCCACGTCAGCTCCTAATTCCATCCACGGCAAACCAAAAGCAG
AGCAGACGGATTTTCTGCACATCAGCGATTTTGACAAAGCTACCATAATG
AAGATTTTAGACCGAGCTGCTGAGGTCAAGGCACTACTTAAGTCAGGGGA
TAGGTCATTTTTGCCGTTTAAAGGGAAGACAATGTCTATGATCTTTGCAA
AGCCATCCATGAGAACTCGGGTTTCATTTGAAACAGGGTTTTCCTTGTTG
GGAGGCCATGCTATATACTTAGGACCTGATGATATCCAGATGGGAAAGAG
AGAGGAAACACGTGACGCTGCTCGTGTTCTATGTCGCTACAATGATATTA
TTATGGCACGTGTTTTTGGTCATCAGGACATTCTTGATCTCGCTAAATTT
GCAACTGTACCAGTTATCAATGGCTTGACAGACTACAACCATCCTTGCCA
AATAATGGCTGATGCCCTCACCATTATTGAACACGTTGGTCGTCTGGAAG
GAACCAAGGTTGTCTATGTTGGAGATGGAAATAACGTAGTGCACTCTTGG
CTTTTGATGGCATCAGTTATTCCTTTCCACTTTGTTTGTGCCTGCCCCAA
AGGTTTTGA
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