FC878130

Overview
NameFC878130
Unique NameFC878130
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length809
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: PYRB_ARATH (Aspartate carbamoyltransferase, chloroplastic OS=Arabidopsis thaliana GN=PYRB PE=2 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 8.497e-16
Identity = 57/164 (34.76%), Postives = 81/164 (49.39%), Query Frame = 1
Query:  244 KAEQTDFLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYL--GPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVIN-GLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGD 726
            K E +D +    FD+  +  I D A E++ + KS  +S +  KG  M+ +F +PS RTR+SFE+    LGG  +      +     K E   D  R +  Y+DII+ R F        A  A +PVIN G     HP Q + D  TI   +G+L+G  V  VGD
Sbjct:   81 KFELSDVIEGKQFDREMLSAIFDVAREMEKIEKSSSQSEI-LKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSSAAKGETLEDTIRTVEGYSDIIVMRHFESGAARKAAATANIPVINAGDGPGEHPTQALLDVYTIQSEIGKLDGISVALVGD 243          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_NEIPE (Ornithine carbamoyltransferase (Fragment) OS=Neisseria perflava GN=argF PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.497e-16
Identity = 50/107 (46.73%), Postives = 66/107 (61.68%), Query Frame = 1
Query:  451 GGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGR-LEGTKVVYVGDGN-NVVHSWLLMAS 765
            G  A YL P   Q+G +E  +D ARVL R  D I  R FG + I +LAK+A VPV NGLT+  HP Q++ADALT+ EH  + L  T   YVGD   N+ +S L++ +
Sbjct:    3 GAGATYLEPSASQIGHKESIKDTARVLGRMYDAIEYRGFGQEIIEELAKYAGVPVFNGLTNEFHPTQMLADALTMREHSSKPLNQTAFAYVGDARYNMGNSLLILGA 109          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_NEIFV (Ornithine carbamoyltransferase (Fragment) OS=Neisseria flava GN=argF PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.497e-16
Identity = 51/119 (42.86%), Postives = 67/119 (56.30%), Query Frame = 1
Query:  451 GGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGR-LEGTKVVYVGDGN-NVVHSWLLMASVIPFHFVCACPK 801
            G    YL P   Q+G +E  +D ARVL R  D I  R FG   + +LAK+A VPV NGLT+  HP Q+ ADALT+ EH G+ L  T   YVGD   N+ +S L++ + +        PK
Sbjct:    3 GAGVTYLEPSASQIGHKESIKDTARVLGRMYDGIEYRGFGQDVVEELAKYAGVPVFNGLTNEFHPTQMFADALTMREHSGKPLNQTAFAYVGDARYNMANSLLVLGAKLGMDVRIGAPK 121          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: PYRB_THETN (Aspartate carbamoyltransferase OS=Thermoanaerobacter tengcongensis GN=pyrB PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.217e-15
Identity = 60/172 (34.88%), Postives = 88/172 (51.16%), Query Frame = 1
Query:  259 DFLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYN-DIIMARVFGHQDILDLAKFATVPVINGLTDYN-HPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASV 768
            D L I D  +  I++ILD A E+K LL +G++     +GKT+  IF +PS RTR+SFE     LG H   +      + K E   D  R + R   D+I+ R         LAK+    +ING    N HP Q + D +TI E  G  +G KV  +GD   ++HS +  +++
Sbjct:    5 DLLGIKDLTREEILEILDLAFEMKKLL-NGEKYSQALRGKTVVTIFFEPSTRTRLSFEMAAKYLGAHYGNIEVATSSVVKGESLIDTIRTVERMKADVIVTRHNMSGTPHLLAKYTNASIINGGDGINEHPTQALLDMMTIKEKKGDFKGLKVAIIGD---IMHSRVARSNI 172          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: PYRB_METVS (Aspartate carbamoyltransferase OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=pyrB PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.508e-15
Identity = 49/156 (31.41%), Postives = 85/156 (54.49%), Query Frame = 1
Query:  265 LHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAI-YLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVIN-GLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGD 726
            + + D  +  I++IL+ + +++A+L     S +   GK ++ +F +PS RTR+SFET    LGG+ I +    +  + K E   D  +V+  Y+D+I+ R          ++ + VPVIN G     HP Q + D  TI   VG+++G K+ ++GD
Sbjct:    5 ISMRDIGRDDILRILEESEKMEAVLNEKGHSDI-LNGKILATLFYEPSTRTRLSFETAMKRLGGNVIGFTDISNTSVTKGESLTDTIKVISGYSDLIVIRHPSEGAARLSSEVSGVPVINAGDGSNQHPTQTLLDLYTIKREVGKIDGLKIAFIGD 159          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_NEISU (Ornithine carbamoyltransferase (Fragment) OS=Neisseria subflava GN=argF PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.193e-15
Identity = 50/119 (42.02%), Postives = 67/119 (56.30%), Query Frame = 1
Query:  451 GGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGR-LEGTKVVYVGDGN-NVVHSWLLMASVIPFHFVCACPK 801
            G    YL P   Q+G +E  +D ARVL R  D I  R FG   + +LAK+A VPV NGLT+  HP Q++ADALT+ EH  + L      YVGD   N+ +S L++A+ +        PK
Sbjct:    3 GAGVTYLEPSASQIGHKESIKDTARVLGRMFDGIEYRGFGQDVVEELAKYAGVPVFNGLTNEFHPTQMLADALTMREHSDKPLNQIAFAYVGDARYNMANSLLVLAAKLGMDVRIGAPK 121          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: PYRB_METBF (Aspartate carbamoyltransferase OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=pyrB PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.395e-15
Identity = 55/156 (35.26%), Postives = 82/156 (52.56%), Query Frame = 1
Query:  265 LHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGP-DDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLT-DYNHPCQIMADALTIIEHVGRLEGTKVVYVGD 726
            + + DF +  I  ILD A +++ + +   RS L   GK ++++F +PS RTR+SFE+    LGG  + LG  +   + K E   D  RV+ +Y D+I+ R          A+FA+VP+ING     +HP Q   D  T I     LEG K+   GD
Sbjct:    9 ISMKDFSRKEINYILDTAEKLEPVARGKKRSRL-LDGKIIALLFFEPSTRTRLSFESAAQRLGGQVLNLGSVEASSVMKGENLADTIRVISKYADLIVLRHPLDGSARMAAEFASVPIINGGDGSLHHPTQTFLDLYT-IRRESHLEGLKIAMAGD 162          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: PYRB_METAC (Aspartate carbamoyltransferase OS=Methanosarcina acetivorans GN=pyrB PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.227e-14
Identity = 55/156 (35.26%), Postives = 82/156 (52.56%), Query Frame = 1
Query:  265 LHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGP-DDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLT-DYNHPCQIMADALTIIEHVGRLEGTKVVYVGD 726
            + + DF +  I  +LD A +++ + +  +RS L   GK +S++F +PS RTR+SFE     LGG A+ LG  +   + K E   D  RV+ +Y D+I+ R          A+FA+VPVING     +HP Q   D  T I     LE  ++   GD
Sbjct:    9 ISMKDFSREEIDHVLDTAEKLEPVARGEERSRL-LDGKIVSLLFFEPSTRTRLSFEAATQRLGGQALNLGSVEASSVMKGENLADTIRVISKYADLIVLRHPLDGSARMAAEFASVPVINGGDGSVHHPTQTFLDLYT-IRRESHLEDLRIAMAGD 162          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: PYRB_META3 (Aspartate carbamoyltransferase OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=pyrB PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.227e-14
Identity = 50/157 (31.85%), Postives = 81/157 (51.59%), Query Frame = 1
Query:  262 FLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAI-YLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVIN-GLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGD 726
            F+ I D  K  I+ IL+ A +++ LL S   S +   GK ++ +F +PS RTR+SFET    LGG  + +    +  + K E   D  +V+  Y D+I+ R           +++ +P+IN G     HP Q M D  TI   +G ++  K+ ++GD
Sbjct:    4 FISIRDIGKKEILNILEEAEKMEELLNSEKHSNI-MNGKILATLFYEPSTRTRLSFETAMKRLGGTVVGFTDIANTSVMKGETLPDTIKVINGYADLIVMRHPSDGAPRLACEYSNIPIINAGDGSNQHPSQTMLDLYTIKREIGHIDNIKIAFIGD 159          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: PYRB_METMA (Aspartate carbamoyltransferase OS=Methanosarcina mazei GN=pyrB PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.093e-14
Identity = 56/156 (35.90%), Postives = 80/156 (51.28%), Query Frame = 1
Query:  265 LHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGP-DDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLT-DYNHPCQIMADALTIIEHVGRLEGTKVVYVGD 726
            + + DF +  I  ILD A +++ + +  +RS L   GK +S++F +PS RTR+SFE     LGG  + LG  +   + K E   D  RV+ +Y D+I+ R           +FA VPVING     +HP Q   D  T I     LEG K+   GD
Sbjct:   10 ISMKDFSREEIDYILDIAEKLEPVARGEERSRL-LDGKIISLLFFEPSTRTRLSFEVATRRLGGQVLSLGSVEASSVMKGENLADTIRVISKYADLIVLRHPLDGSARMATEFAAVPVINGGDGSVHHPTQTFLDLYT-IRRESHLEGLKIAMAGD 163          
The following BLAST results are available for this feature:
BLAST of FC878130 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PYRB_ARATH8.497e-1634.76Aspartate carbamoyltransferase, chloroplastic OS=A... [more]
OTC_NEIPE8.497e-1646.73Ornithine carbamoyltransferase (Fragment) OS=Neiss... [more]
OTC_NEIFV8.497e-1642.86Ornithine carbamoyltransferase (Fragment) OS=Neiss... [more]
PYRB_THETN4.217e-1534.88Aspartate carbamoyltransferase OS=Thermoanaerobact... [more]
PYRB_METVS5.508e-1531.41Aspartate carbamoyltransferase OS=Methanococcus va... [more]
OTC_NEISU7.193e-1542.02Ornithine carbamoyltransferase (Fragment) OS=Neiss... [more]
PYRB_METBF9.395e-1535.26Aspartate carbamoyltransferase OS=Methanosarcina b... [more]
PYRB_METAC1.227e-1435.26Aspartate carbamoyltransferase OS=Methanosarcina a... [more]
PYRB_META31.227e-1431.85Aspartate carbamoyltransferase OS=Methanococcus ae... [more]
PYRB_METMA2.093e-1435.90Aspartate carbamoyltransferase OS=Methanosarcina m... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ12YE24RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ12YE24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878130 ID=FC878130; Name=FC878130; organism=Citrus clementina; type=EST; length=809bp
GCTTGTTACCAGTTCCCACCAAAATCAATGGCGGCGATTTCAAGTTGCTG
TACATATCGATCGGGCAAAATGCCTCTATCCGCTTCTTCTTCTTCTTCTT
TCTCCGGAAAGTTTCTCCCGAAACAATCGCGATTTCCTGCCACGTCGGCG
TCTGCTGCCCTGACATTTCCGGTCCTCCGAAGAAGCATCACGTGCCAGGC
ATCCTCGGCCACGTCAGCTCCTAATTCCATCCACGGCAAACCAAAAGCAG
AGCAGACGGATTTTCTGCACATCAGCGATTTTGACAAAGCTACCATAATG
AAGATTTTAGACCGAGCTGCTGAGGTCAAGGCACTACTTAAGTCAGGGGA
TAGGTCATTTTTGCCGTTTAAAGGGAAGACAATGTCTATGATCTTTGCAA
AGCCATCCATGAGAACTCGGGTTTCATTTGAAACAGGGTTTTCCTTGTTG
GGAGGCCATGCTATATACTTAGGACCTGATGATATCCAGATGGGAAAGAG
AGAGGAAACACGTGACGCTGCTCGTGTTCTATGTCGCTACAATGATATTA
TTATGGCACGTGTTTTTGGTCATCAGGACATTCTTGATCTCGCTAAATTT
GCAACTGTACCAGTTATCAATGGCTTGACAGACTACAACCATCCTTGCCA
AATAATGGCTGATGCCCTCACCATTATTGAACACGTTGGTCGTCTGGAAG
GAACCAAGGTTGTCTATGTTGGAGATGGAAATAACGTAGTGCACTCTTGG
CTTTTGATGGCATCAGTTATTCCTTTCCACTTTGTTTGTGCCTGCCCCAA
AGGTTTTGA
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