FC878130

Overview
NameFC878130
Unique NameFC878130
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length809
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: PYRB_METST (Aspartate carbamoyltransferase OS=Methanosphaera stadtmanae (strain DSM 3091) GN=pyrB PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.022e-13
Identity = 60/188 (31.91%), Postives = 91/188 (48.40%), Query Frame = 1
Query:  259 DFLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAI-YLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFAT----VPVIN-GLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGD--GNNVVHSWLLMASVIPFHFVCACP 798
            + + I DF K+ +  IL+ A E++ + KS  +      GK + ++F +PS RTR+SFET    LGG  + +       + K E   D A+++ +Y D I+ R     D+   A+F +    VPVIN G     HP Q M D  TI   +G L+  K+  VGD      VHS +   ++     V   P
Sbjct:    7 NIISIRDFKKSDVEYILNLAEEMEPIAKS-QKVCHEKDGKLLGVMFYEPSTRTRLSFETAMKRLGGDVVGFNQKQGTSIQKGEVLYDTAQIVSQYTDAIVLR----HDMEGAARFVSNIVDVPVINAGDGAGQHPTQTMLDLYTIKRTLGELKNLKIALVGDLKYGRTVHSLVYALAMFNVEIVFISP 189          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: PYRB_METKA (Aspartate carbamoyltransferase OS=Methanopyrus kandleri GN=pyrB PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.022e-13
Identity = 51/158 (32.28%), Postives = 77/158 (48.73%), Query Frame = 1
Query:  259 DFLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYL-GPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYN-HPCQIMADALTIIEHVGRLEGTKVVYVGD 726
            D + + DF +  + ++L  A E++ + + G    L   GK ++ +F  PS RTR+SFE+    LGG  I L G +     K E   D  R +  Y D+I+ R          A+   VPVIN     N HP Q   D  TI++  GR+ G ++  +GD
Sbjct:    8 DVISVRDFTRKELEELLSHAEEMERVYERGGDDRL--SGKILATLFFSPSTRTRLSFESAMHRLGGDVISLGGKEAASTAKGENLADTVRTVEHYCDVIVLRHPKEGAARLAAELTDVPVINAGDGANQHPTQTFLDLYTIMKEKGRIGGLRIGLLGD 163          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: PYRB_ALKMQ (Aspartate carbamoyltransferase OS=Alkaliphilus metalliredigens (strain QYMF) GN=pyrB PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.022e-13
Identity = 51/148 (34.46%), Postives = 75/148 (50.68%), Query Frame = 1
Query:  370 KGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKR-EETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLT-DYNHPCQIMADALTIIEHVGRLEGTKVVYVGD--GNNVVHSWLLMASVIP-FHFVCACP 798
            KGK +  +F +PS RTR+SFE+    +GG  +     +    K+ E   D  RVL  Y D+++ R       L  +++ATVP++NG    + HP Q + D +TI  + G++E  KV + GD      VHS L   S  P   FV   P
Sbjct:   41 KGKILGTLFYEPSTRTRLSFESAMLRMGGTVLGFSDANTSSAKKGESIADTIRVLDDYADLLVMRHPREGAPLLASQYATVPIVNGGDGGHQHPTQTLTDLITIHHNKGKIENLKVAFCGDLLFGRTVHSLLKTLSRFPNMEFVFISP 188          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: PYRB_NEIM0 (Aspartate carbamoyltransferase OS=Neisseria meningitidis serogroup C (strain 053442) GN=pyrB PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.947e-13
Identity = 56/156 (35.90%), Postives = 77/156 (49.36%), Query Frame = 1
Query:  265 LHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREET-RDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYN-HPCQIMADALTIIEHVGRLEGTKVVYVGD 726
            + ISD  +  +  +L  A ++KA  + GD      +GK +   F +PS RTR+SFET    LGG  I          K+ ET  D AR++  Y D I+ R          A+F+ VPVIN     N HP Q + D +TI E  GRL+  K+   GD
Sbjct:   11 ISISDLSREQLECLLQTALKLKAHPR-GDL----LEGKLIGSCFFEPSTRTRLSFETAVQCLGGKVIGFSDGANTSAKKGETLADTARIISGYTDAIIQRHPKDGAARVAAEFSRVPVINAGDGTNQHPSQTLLDLVTIYETQGRLDKLKIAMAGD 161          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: PYRB_NEIG1 (Aspartate carbamoyltransferase OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=pyrB PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.947e-13
Identity = 56/156 (35.90%), Postives = 77/156 (49.36%), Query Frame = 1
Query:  265 LHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREET-RDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYN-HPCQIMADALTIIEHVGRLEGTKVVYVGD 726
            + ISD  +  +  +L  A ++KA  + GD      +GK +   F +PS RTR+SFET    LGG  I          K+ ET  D AR++  Y D I+ R          A+F+ VPVIN     N HP Q + D +TI E  GRL+  K+   GD
Sbjct:   11 ISISDLSREQLEYLLQTALKLKAHPR-GDL----LEGKLIGSCFFEPSTRTRLSFETAVQRLGGKVIGFSDGANTSAKKGETLADTARIISGYTDAIVQRHPKDGAARVAAEFSRVPVINAGDGTNQHPSQTLLDLVTIYETQGRLDKLKIAMAGD 161          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: PYRB_CORGL (Aspartate carbamoyltransferase OS=Corynebacterium glutamicum GN=pyrB PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.947e-13
Identity = 63/188 (33.51%), Postives = 87/188 (46.28%), Query Frame = 1
Query:  265 LHISDFDKATIMKILDRAAEVKALLKSGDRSFLP-FKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYN-DIIMARVFGHQDILDLAKFATV-----PVIN-GLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGD--GNNVVHSWLLMASVIPFHFVCACP 798
            L ISD  K  I+ +LD A   K +L+  +   LP  +G+T+  +F + S RTR SFET    +    I +      + K E  +D    L     D I+ R         LA+F         VIN G   + HP Q + DALTI +  GR+EG KVV VGD   + VV S + + S +    V   P
Sbjct:    5 LSISDLSKDEIVGLLDEADRFKEVLEGREVKKLPTLRGRTIFTLFYENSTRTRSSFETAGKWMSADVINISASSSSVKKGESLKDTGLTLSAIGADAIIMRHPASGAAQQLAQFVAPGGNGPSVINAGDGSHQHPTQALLDALTIRQRTGRIEGLKVVIVGDCLHSRVVRSNVDLLSTLGAEVVLVAP 192          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: PYRB_CORGB (Aspartate carbamoyltransferase OS=Corynebacterium glutamicum (strain R) GN=pyrB PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.947e-13
Identity = 63/188 (33.51%), Postives = 87/188 (46.28%), Query Frame = 1
Query:  265 LHISDFDKATIMKILDRAAEVKALLKSGDRSFLP-FKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYN-DIIMARVFGHQDILDLAKFATV-----PVIN-GLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGD--GNNVVHSWLLMASVIPFHFVCACP 798
            L ISD  K  I+ +LD A   K +L+  +   LP  +G+T+  +F + S RTR SFET    +    I +      + K E  +D    L     D I+ R         LA+F         VIN G   + HP Q + DALTI +  GR+EG KVV VGD   + VV S + + S +    V   P
Sbjct:    5 LSISDLSKDEIVGLLDEADRFKEVLEGREVKKLPTLRGRTIFTLFYENSTRTRSSFETAGKWMSADVINISASSSSVKKGESLKDTGLTLSAIGADAIIMRHPASGAAQQLAQFVAPGGNGPSVINAGDGSHQHPTQALLDALTIRQRTGRIEGLKVVIVGDCLHSRVVRSNVDLLSTLGAEVVLVAP 192          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: PYRB_NEIMF (Aspartate carbamoyltransferase OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=pyrB PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.155e-13
Identity = 56/156 (35.90%), Postives = 77/156 (49.36%), Query Frame = 1
Query:  265 LHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREET-RDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYN-HPCQIMADALTIIEHVGRLEGTKVVYVGD 726
            + ISD  +  +  +L  A ++KA  + GD      +GK +   F +PS RTR+SFET    LGG  I          K+ ET  D AR++  Y D I+ R          A+F+ VPVIN     N HP Q + D +TI E  GRL+  K+   GD
Sbjct:   11 ISISDLSREQLECLLQTALKLKAHPR-GDL----LEGKLIGSCFFEPSTRTRLSFETAVQRLGGKVIGFSDGANTSAKKGETLADTARIISGYTDAIIQRHPKDGAARVAAEFSRVPVINAGDGTNQHPSQTLLDLVTIYETQGRLDKLKIAMAGD 161          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: PYRB_NEIMB (Aspartate carbamoyltransferase OS=Neisseria meningitidis serogroup B GN=pyrB PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.155e-13
Identity = 56/156 (35.90%), Postives = 77/156 (49.36%), Query Frame = 1
Query:  265 LHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREET-RDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYN-HPCQIMADALTIIEHVGRLEGTKVVYVGD 726
            + ISD  +  +  +L  A ++KA  + GD      +GK +   F +PS RTR+SFET    LGG  I          K+ ET  D AR++  Y D I+ R          A+F+ VPVIN     N HP Q + D +TI E  GRL+  K+   GD
Sbjct:   11 ISISDLSREQLECLLQTALKLKAHPR-GDL----LEGKLIGSCFFEPSTRTRLSFETAVQRLGGKVIGFSDGANTSAKKGETLADTARIISGYTDAIIQRHPKDGAARVAAEFSRVPVINAGDGTNQHPSQTLLDLVTIYETQGRLDKLKIAMAGD 161          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: PYRB_NEIMA (Aspartate carbamoyltransferase OS=Neisseria meningitidis serogroup A GN=pyrB PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.155e-13
Identity = 56/156 (35.90%), Postives = 77/156 (49.36%), Query Frame = 1
Query:  265 LHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREET-RDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYN-HPCQIMADALTIIEHVGRLEGTKVVYVGD 726
            + ISD  +  +  +L  A ++KA  + GD      +GK +   F +PS RTR+SFET    LGG  I          K+ ET  D AR++  Y D I+ R          A+F+ VPVIN     N HP Q + D +TI E  GRL+  K+   GD
Sbjct:   11 ISISDLSREQLECLLQTALKLKAHPR-GDL----LEGKLIGSCFFEPSTRTRLSFETAVQRLGGKVIGFSDGANTSAKKGETLADTARIISGYTDAIIQRHPKDGAARVAAEFSRVPVINAGDGTNQHPSQTLLDLVTIYETQGRLDKLKIAMAGD 161          
The following BLAST results are available for this feature:
BLAST of FC878130 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PYRB_METST3.022e-1331.91Aspartate carbamoyltransferase OS=Methanosphaera s... [more]
PYRB_METKA3.022e-1332.28Aspartate carbamoyltransferase OS=Methanopyrus kan... [more]
PYRB_ALKMQ3.022e-1334.46Aspartate carbamoyltransferase OS=Alkaliphilus met... [more]
PYRB_NEIM03.947e-1335.90Aspartate carbamoyltransferase OS=Neisseria mening... [more]
PYRB_NEIG13.947e-1335.90Aspartate carbamoyltransferase OS=Neisseria gonorr... [more]
PYRB_CORGL3.947e-1333.51Aspartate carbamoyltransferase OS=Corynebacterium ... [more]
PYRB_CORGB3.947e-1333.51Aspartate carbamoyltransferase OS=Corynebacterium ... [more]
PYRB_NEIMF5.155e-1335.90Aspartate carbamoyltransferase OS=Neisseria mening... [more]
PYRB_NEIMB5.155e-1335.90Aspartate carbamoyltransferase OS=Neisseria mening... [more]
PYRB_NEIMA5.155e-1335.90Aspartate carbamoyltransferase OS=Neisseria mening... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ12YE24RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ12YE24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878130 ID=FC878130; Name=FC878130; organism=Citrus clementina; type=EST; length=809bp
GCTTGTTACCAGTTCCCACCAAAATCAATGGCGGCGATTTCAAGTTGCTG
TACATATCGATCGGGCAAAATGCCTCTATCCGCTTCTTCTTCTTCTTCTT
TCTCCGGAAAGTTTCTCCCGAAACAATCGCGATTTCCTGCCACGTCGGCG
TCTGCTGCCCTGACATTTCCGGTCCTCCGAAGAAGCATCACGTGCCAGGC
ATCCTCGGCCACGTCAGCTCCTAATTCCATCCACGGCAAACCAAAAGCAG
AGCAGACGGATTTTCTGCACATCAGCGATTTTGACAAAGCTACCATAATG
AAGATTTTAGACCGAGCTGCTGAGGTCAAGGCACTACTTAAGTCAGGGGA
TAGGTCATTTTTGCCGTTTAAAGGGAAGACAATGTCTATGATCTTTGCAA
AGCCATCCATGAGAACTCGGGTTTCATTTGAAACAGGGTTTTCCTTGTTG
GGAGGCCATGCTATATACTTAGGACCTGATGATATCCAGATGGGAAAGAG
AGAGGAAACACGTGACGCTGCTCGTGTTCTATGTCGCTACAATGATATTA
TTATGGCACGTGTTTTTGGTCATCAGGACATTCTTGATCTCGCTAAATTT
GCAACTGTACCAGTTATCAATGGCTTGACAGACTACAACCATCCTTGCCA
AATAATGGCTGATGCCCTCACCATTATTGAACACGTTGGTCGTCTGGAAG
GAACCAAGGTTGTCTATGTTGGAGATGGAAATAACGTAGTGCACTCTTGG
CTTTTGATGGCATCAGTTATTCCTTTCCACTTTGTTTGTGCCTGCCCCAA
AGGTTTTGA
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