FC878130

Overview
NameFC878130
Unique NameFC878130
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length809
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: PYRB_BRAHW (Aspartate carbamoyltransferase OS=Brachyspira hyodysenteriae (strain ATCC 49526 / WA1) GN=pyrB PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.558e-12
Identity = 60/186 (32.26%), Postives = 90/186 (48.39%), Query Frame = 1
Query:  259 DFLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAI-YLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFA----TVPVINGLTDYN-HPCQIMADALTIIEHVGRLEGTKVVYVGDG--NNVVHSWL--LMASVIPFHFV 786
            +F+ I +  K  ++++LD A E+        R  +   G  M+ IF +PS RTR+SF +    LG   + +  P+   + K E  RD   ++  Y+DII+ R      I   AKFA      P+IN     N HP Q + D  T+ E +G +E  KV +VGD      VHS +  LM     F+F+
Sbjct:    3 NFISIKELSKEEVIEVLDVAKELDNADSKERRKIMD--GMIMTSIFFEPSTRTRLSFTSAAYRLGCKELGFDNPEQSSVKKGESLRDTIIMVSAYSDIIVMR----HSIDGAAKFAEEVTNCPIINAGDGANEHPSQTLLDLYTLREELGTIENQKVAFVGDTRYGRTVHSLVDGLMMFNGQFYFI 182          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: PYRB_BACFR (Aspartate carbamoyltransferase OS=Bacteroides fragilis GN=pyrB PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.558e-12
Identity = 57/185 (30.81%), Postives = 91/185 (49.19%), Query Frame = 1
Query:  250 EQTDFLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAI-YLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYN-HPCQIMADALTIIEHVGRLEGTKVVYVGD--GNNVVHSWLL-MASVIP-FHFV 786
            E    + I++  +  I+ +L+ A + +   K+ +R  L  +GK ++ +F +PS RTR+SFET  + LG   I +  P      K E  +D   ++  Y D+I+ R +        ++ A VP++N     N HP Q M D  +I +  G LE   +  VGD      VHS L+ M    P FHF+
Sbjct:    2 ENRSLVTIAEHSREKILYMLEMAKQFE---KNPNRRLL--EGKVVATLFFEPSTRTRLSFETAANRLGARVIGFSDPKATSSSKGETLKDTIMMVSNYADVIVMRHYLEGAARYASEVAPVPIVNAGDGANQHPSQTMLDLYSIYKTQGTLENLNIYLVGDLKYGRTVHSLLMAMRHFNPTFHFI 181          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: PYRB_BACFN (Aspartate carbamoyltransferase OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=pyrB PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.558e-12
Identity = 57/185 (30.81%), Postives = 91/185 (49.19%), Query Frame = 1
Query:  250 EQTDFLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAI-YLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYN-HPCQIMADALTIIEHVGRLEGTKVVYVGD--GNNVVHSWLL-MASVIP-FHFV 786
            E    + I++  +  I+ +L+ A + +   K+ +R  L  +GK ++ +F +PS RTR+SFET  + LG   I +  P      K E  +D   ++  Y D+I+ R +        ++ A VP++N     N HP Q M D  +I +  G LE   +  VGD      VHS L+ M    P FHF+
Sbjct:    2 ENRSLVTIAEHSREKILYMLEMAKQFE---KNPNRRLL--EGKVVATLFFEPSTRTRLSFETAANRLGARVIGFSDPKATSSSKGETLKDTIMMVSNYADVIVMRHYLEGAARYASEVAPVPIVNAGDGANQHPSQTMLDLYSIYKTQGTLENLNIYLVGDLKYGRTVHSLLMAMRHFNPTFHFI 181          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: PYRB_AERPE (Aspartate carbamoyltransferase OS=Aeropyrum pernix GN=pyrB PE=3 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.558e-12
Identity = 51/158 (32.28%), Postives = 79/158 (50.00%), Query Frame = 1
Query:  259 DFLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYL-GPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTD-YNHPCQIMADALTIIEHVGRLEGTKVVYVGD 726
            D + I+DF +  +  +  +A  +++  K+G +   P  GK +++ F +PS RTR+SFET    LGG  + + G + I + K E   D   +L  Y D I+ R       L  A+ A  PVING     +HP Q M D  T+    G ++G     +GD
Sbjct:   10 DVISITDFTRGDLELLFRQADVIES--KAGSK---PLDGKVVALAFFEPSTRTRLSFETAVKRLGGSTLLISGEEAISVAKGENLADTITMLDSYADAIVIRHRYEGAALYAAEVAEKPVINGGDGRQHHPTQAMLDLYTVYSLFGTVDGLTYGVLGD 162          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: PYRB_THENV (Aspartate carbamoyltransferase OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=pyrB PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.341e-12
Identity = 51/158 (32.28%), Postives = 79/158 (50.00%), Query Frame = 1
Query:  259 DFLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAI-YLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTD-YNHPCQIMADALTIIEHVGRLEGTKVVYVGD 726
            D +   DF +  + ++ + A  ++   KS    FL  +G+ M++ F +PS RTR+SFE     LGG  I + G +   + K E   D  ++L  Y+D+I+ R          A+ A  PVING    +NHP Q M D  T+    G ++G  V  +GD
Sbjct:    6 DVISARDFGRRDLEELFETARYMEKYSKSR-LEFL--RGRVMAVAFFEPSTRTRLSFEVAMRRLGGDVIGFWGAEGTSVEKGETLVDTVKMLDAYSDVIVVRHRYEGASKLAAEVAESPVINGGDGAFNHPTQAMLDVYTMWREFGTVDGLNVGLIGD 160          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: PYRB_METHJ (Aspartate carbamoyltransferase OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=pyrB PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.341e-12
Identity = 51/156 (32.69%), Postives = 79/156 (50.64%), Query Frame = 1
Query:  265 LHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDI-QMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDY-NHPCQIMADALTIIEHVGRLEGTKVVYVGD 726
            + I D D+  I ++L RA EV A     +    P KGK + ++F +PS RTR+SFE+    LGG  + LG  ++  M K E   D  RV+  Y D I+ R          ++F+ +P++NG      HP Q + D  TI + +  L+   +  +GD
Sbjct:    5 ISIHDLDRDQIDRLLARAGEVTAEFAGKE----PLKGKILGLLFFEPSTRTRMSFESAMLRLGGSCMNLGGVEVSSMAKGETLADTIRVVSGYADAIVLRHPKVGAARLASEFSEIPILNGGDGAGQHPSQTLIDLYTIRQSMS-LDNIHIGLIGD 155          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: PYRB_HYPBU (Aspartate carbamoyltransferase OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=pyrB PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.341e-12
Identity = 52/158 (32.91%), Postives = 81/158 (51.27%), Query Frame = 1
Query:  259 DFLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAI-YLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVIN-GLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGD 726
            D + I DFD+ ++ ++ + A +  +LL+   R  L  +G  +++ F +PS RTR+SFET    LG   I +   + I + K E   D  R+L  Y D+I+ R       L  A+ A  PVIN G    +HP Q M D  T+ +  G ++G     +GD
Sbjct:   11 DVISILDFDRDSLEQLFEVADKFSSLLRERGRIPL-LEGYIVALAFFEPSTRTRLSFETAAKRLGADTIGFTSEEAISIAKGETLADTIRMLDSYADMIVLRHRYEGAALYAAEIAEHPVINAGDGKQHHPTQAMLDLYTVRKLFGTIDGLTYGVLGD 167          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: PYR1_YEAST (Protein URA1 OS=Saccharomyces cerevisiae GN=URA2 PE=1 SV=4)

HSP 1 Score: 72.4034 bits (176), Expect = 3.341e-12
Identity = 52/165 (31.52%), Postives = 77/165 (46.67%), Query Frame = 1
Query:  265 LHISDFDKATIMKILDRAAEVKALL-KSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLT-DYNHPCQIMADALTIIEHVGRLEGTKVVYVGD--GNNVVHS 747
            L I  F ++    +   A E++A + + G    +  KG  ++ IF +PS RT  SF      LGG  + + P    + K E  +D  R L  Y+D I+ R      +   AK++ VP+ING      HP Q   D  TI E +G + G  V ++GD      VHS
Sbjct: 1914 LSIKQFKRSDFHVLFAVAQELRAAVAREGVLDLM--KGHVITTIFFEPSTRTCSSFIAAMERLGGRIVNVNPLVSSVKKGETLQDTIRTLACYSDAIVMRHSEEMSVHIAAKYSPVPIINGGNGSREHPTQAFLDLFTIREEIGTVNGITVTFMGDLKHGRTVHS 2076          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: PYRB_THEGJ (Aspartate carbamoyltransferase OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=pyrB PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.364e-12
Identity = 57/181 (31.49%), Postives = 90/181 (49.72%), Query Frame = 1
Query:  259 DFLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPF-KGKTMSMIFAKPSMRTRVSFETGFSLLGGHAI-YLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVIN-GLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGD--GNNVVHSWLLMASVIPFHFV 786
            D + I DF K+ I  +L  A  ++  L+  ++  L + +GK ++ +F +PS RTR+SFE+    LGG  I +       + K E   D  R + +Y+D+I+ R          A+ A VPVIN G     HP Q + D  TI    G+++G  +  +GD      VHS   +A  + F+ V
Sbjct:    7 DVISIRDFSKSDIEFVLKVAERLEEELR--EKGSLEYARGKILATLFFEPSTRTRLSFESAMHRLGGSVIGFSSASSTSVRKGESLADTIRTVEQYSDVIVIRHPMEGAARLAAEVAEVPVINAGDGSNQHPTQTLLDLYTIKRAFGKIDGLTIGLLGDLKYGRTVHS---LAEALAFYDV 182          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: PYRB_MOOTA (Aspartate carbamoyltransferase OS=Moorella thermoacetica (strain ATCC 39073) GN=pyrB PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.364e-12
Identity = 51/177 (28.81%), Postives = 82/177 (46.33%), Query Frame = 1
Query:  244 KAEQTDFLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRY-NDIIMARVFGHQDILDLAKFATVPVINGLTD-YNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASV 768
            + ++ D L + D     I  IL+ AA +K +L    +     +GK +  +F +PS RTR SFE     +G   + +      + K E  RD AR L     D ++ R         LA+     V+NG    + HP Q + D  TI E +G  +G KV  +GD   ++HS +  +++
Sbjct:    2 RLQRKDLLGLKDLSAEEIELILETAAPMKEILGRDIKKVPTLRGKLVVTMFYEPSTRTRTSFELAAKYMGADTMSIATATSSVQKGESLRDTARTLAAMGTDAVIIRHSAAGSPALLARTIEASVLNGGDGMHEHPTQALLDMFTIKEKLGGFKGLKVAILGD---ILHSRVARSNI 175          
The following BLAST results are available for this feature:
BLAST of FC878130 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PYRB_BRAHW2.558e-1232.26Aspartate carbamoyltransferase OS=Brachyspira hyod... [more]
PYRB_BACFR2.558e-1230.81Aspartate carbamoyltransferase OS=Bacteroides frag... [more]
PYRB_BACFN2.558e-1230.81Aspartate carbamoyltransferase OS=Bacteroides frag... [more]
PYRB_AERPE2.558e-1232.28Aspartate carbamoyltransferase OS=Aeropyrum pernix... [more]
PYRB_THENV3.341e-1232.28Aspartate carbamoyltransferase OS=Thermoproteus ne... [more]
PYRB_METHJ3.341e-1232.69Aspartate carbamoyltransferase OS=Methanospirillum... [more]
PYRB_HYPBU3.341e-1232.91Aspartate carbamoyltransferase OS=Hyperthermus but... [more]
PYR1_YEAST3.341e-1231.52Protein URA1 OS=Saccharomyces cerevisiae GN=URA2 P... [more]
PYRB_THEGJ4.364e-1231.49Aspartate carbamoyltransferase OS=Thermococcus gam... [more]
PYRB_MOOTA4.364e-1228.81Aspartate carbamoyltransferase OS=Moorella thermoa... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ12YE24RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ12YE24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878130 ID=FC878130; Name=FC878130; organism=Citrus clementina; type=EST; length=809bp
GCTTGTTACCAGTTCCCACCAAAATCAATGGCGGCGATTTCAAGTTGCTG
TACATATCGATCGGGCAAAATGCCTCTATCCGCTTCTTCTTCTTCTTCTT
TCTCCGGAAAGTTTCTCCCGAAACAATCGCGATTTCCTGCCACGTCGGCG
TCTGCTGCCCTGACATTTCCGGTCCTCCGAAGAAGCATCACGTGCCAGGC
ATCCTCGGCCACGTCAGCTCCTAATTCCATCCACGGCAAACCAAAAGCAG
AGCAGACGGATTTTCTGCACATCAGCGATTTTGACAAAGCTACCATAATG
AAGATTTTAGACCGAGCTGCTGAGGTCAAGGCACTACTTAAGTCAGGGGA
TAGGTCATTTTTGCCGTTTAAAGGGAAGACAATGTCTATGATCTTTGCAA
AGCCATCCATGAGAACTCGGGTTTCATTTGAAACAGGGTTTTCCTTGTTG
GGAGGCCATGCTATATACTTAGGACCTGATGATATCCAGATGGGAAAGAG
AGAGGAAACACGTGACGCTGCTCGTGTTCTATGTCGCTACAATGATATTA
TTATGGCACGTGTTTTTGGTCATCAGGACATTCTTGATCTCGCTAAATTT
GCAACTGTACCAGTTATCAATGGCTTGACAGACTACAACCATCCTTGCCA
AATAATGGCTGATGCCCTCACCATTATTGAACACGTTGGTCGTCTGGAAG
GAACCAAGGTTGTCTATGTTGGAGATGGAAATAACGTAGTGCACTCTTGG
CTTTTGATGGCATCAGTTATTCCTTTCCACTTTGTTTGTGCCTGCCCCAA
AGGTTTTGA
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