FC878130

Overview
NameFC878130
Unique NameFC878130
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length809
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: PYRB_CLOP1 (Aspartate carbamoyltransferase OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=pyrB PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.722e-12
Identity = 43/120 (35.83%), Postives = 63/120 (52.50%), Query Frame = 1
Query:  373 GKTMSMIFAKPSMRTRVSFETGFSLLGGHAI-YLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVIN-GLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGD 726
            GK ++ +F +PS RTR+SFE+    LGG  I +  P+   + K E  RD  + +  Y D+I  R          + ++ +PVIN G   + HP Q + D LTI E+ G LEG  +   GD
Sbjct:   41 GKILATLFYEPSTRTRLSFESAMLRLGGQVIGFSEPNSSSVSKGESLRDTIKTVNCYADLIAMRHPLEGAAKVASMYSDIPVINAGDGGHQHPTQTLTDLLTIKEYKGNLEGNTIALCGD 160          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: PYRB3_SHEHH (Aspartate carbamoyltransferase 3 OS=Shewanella halifaxensis (strain HAW-EB4) GN=pyrB3 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.722e-12
Identity = 60/181 (33.15%), Postives = 87/181 (48.07%), Query Frame = 1
Query:  265 LHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAI-YLGPDDIQMGKREET-RDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYN-HPCQIMADALTIIEHVGRLEGTKVVYVGD--GNNVVHSWLLMASVI--PFHFV 786
            + ISD  ++ +  I+  A +    LK   R  L  K K ++  F + S RTR+SFET    LGG  I +    +  +GK+ ET  D+ +V+  Y D    R          ++F++ PVING    N HP Q + D  +I E  G LE  +V +VGD      VHS     S+    FHF+
Sbjct:   11 ISISDLSRSELELIVSTAND----LKQNPRPDL-LKNKVVASCFFEASTRTRLSFETAVQRLGGSVIGFPDSGNTSLGKKGETLADSVQVISSYCDAFFMRHNQEGAARLASEFSSAPVINGGDGSNQHPTQTLLDLFSIYETQGTLEKLQVAFVGDLKYGRTVHSLTQALSLFDCEFHFI 186          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: PYRB_TOLAT (Aspartate carbamoyltransferase OS=Tolumonas auensis (strain DSM 9187 / TA4) GN=pyrB PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.270e-11
Identity = 58/186 (31.18%), Postives = 88/186 (47.31%), Query Frame = 1
Query:  259 DFLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAI-YLGPDDIQMGKREET-RDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYN-HPCQIMADALTIIEHVGRLEGTKVVYVGD--GNNVVHSWLLMASVIPFHFVCACPK 801
            + L I+D  +  +  ++  A++    LK   R  L  + K ++  F + S RTR+SFET    LGG  I +    +  + K+ ET  D+ RV+  Y D  + R          A+F++VPVIN     N HP Q + D  +I E  G L+G K+ +VGD      VHS     S+    F    P+
Sbjct:    9 NILSIADLSRTDLELVVQTASQ----LKQSPRHDL-LQHKVIASCFFEASTRTRLSFETAVHRLGGSVIGFADAGNTSLAKKGETLADSVRVITSYTDAFVIRHPQEGAARLSAEFSSVPVINAGDGSNQHPTQTLLDLFSIYETQGTLDGLKLAFVGDLKYGRTVHSLAQALSLFGARFYFISPE 189          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: PYRB_SALTO (Aspartate carbamoyltransferase OS=Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) GN=pyrB PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.658e-11
Identity = 52/171 (30.41%), Postives = 79/171 (46.20%), Query Frame = 1
Query:  265 LHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYN-DIIMARVFGHQDILDLAKFATVPVIN-GLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASVI 771
            L  +D D  T ++ILD AAE+  +     +     +G+T+  +F + S RTR+SFE     L    I        + K E  +D A  L     D ++ R         LA +    V+N G   + HP Q + DA T+   +GRL G  V  VGD   V+HS +  ++V+
Sbjct:    6 LSSADLDAGTALQILDTAAEMATVAGREVKKLPALRGRTVVNLFYEDSTRTRISFEAAAKRLSADVINFSVKGSSVAKGESLKDTALTLQAMGADAVVVRHPASGAPYQLADWVDGSVVNAGDGTHEHPTQALLDAYTMRSRLGRLAGLSVAVVGD---VLHSRVARSNVL 173          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: PYRB_SACD2 (Aspartate carbamoyltransferase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=pyrB PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.658e-11
Identity = 60/178 (33.71%), Postives = 86/178 (48.31%), Query Frame = 1
Query:  244 KAEQTDFLHISDFDKATIMKILDRAAEVK--ALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYL-GPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYN-HPCQIMADALTI---IEHVGR-LEGTKVVYVGD--GNNVVHS 747
            K   +  L +  F++A I +I   A  ++  AL +   R     +G  +  +F +PS RTRVSF   F+LLGG      G     + K E   D ARVL  Y+D+I  R      + + A+ + VPVING    N HP Q + D  TI   +   GR L+G ++  +GD      VHS
Sbjct:    2 KFSGSHILSVEQFERADIERIFAVADSMEPYALRQKVTRVL---EGAILGNMFFEPSTRTRVSFGCAFNLLGGEVRETTGFKSSAIAKGESLYDTARVLSGYSDVICMRHPQEGSVAEFAQASRVPVINGGDGANEHPSQALLDLYTIQKELRDKGRSLDGLRIAMIGDLKHGRTVHS 176          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: PYRB_PICTO (Aspartate carbamoyltransferase OS=Picrophilus torridus GN=pyrB PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.658e-11
Identity = 53/171 (30.99%), Postives = 80/171 (46.78%), Query Frame = 1
Query:  265 LHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPD-DIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVIN-GLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGD--GNNVVHSWLLMAS 765
            + I+D     +  I + A  +   LK+G +      G+ M+ +F +PS RTR+SFE+    LGG  I +         K E   D  R++  Y+DII+ R         + KF++ PVIN G     HP Q + D  TI +  G +   ++  +GD      VHS LL  S
Sbjct:    8 ISINDLSDEDLNLIFNTADSMAGNLKNGSQ-IKTMSGRIMATLFFEPSTRTRLSFESAMQRLGGSVISMADSKSSSTAKGETLADTTRMVSSYSDIIVVRHPLEGAARLVQKFSSRPVINAGDGSGEHPTQTLVDLYTIKKSFGDINNLEISIIGDLRYGRTVHSLLLALS 177          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTCC_STRPY (Ornithine carbamoyltransferase, catabolic (Fragment) OS=Streptococcus pyogenes GN=arcB PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.658e-11
Identity = 40/95 (42.11%), Postives = 56/95 (58.95%), Query Frame = 1
Query:  262 FLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYND 546
            FL   DF +A +  ++D +A +K L K G       +GK ++++F K S RTR +F T    LG H  YLG +DIQ+GK+E T D A+VL R  D
Sbjct:   10 FLAEKDFTRAELEYLIDFSAHLKDLKKRGVPHHY-LEGKNIALLFEKTSTRTRAAFTTAAIDLGAHPEYLGANDIQLGKKESTEDTAKVLGRMFD 103          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: PYRB_CLOPH (Aspartate carbamoyltransferase OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=pyrB PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.166e-11
Identity = 43/121 (35.54%), Postives = 62/121 (51.24%), Query Frame = 1
Query:  370 KGKTMSMIFAKPSMRTRVSFETGFSLLGGHAI-YLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVIN-GLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGD 726
            +GK ++ +F +PS RTR+SFE     LGG  + +   D     K E   D  RV+  Y DI   R       L  + ++++PVIN G   +NHP Q + D LTI    GRL+   + + GD
Sbjct:   37 QGKKLATLFYEPSTRTRLSFEAAMLNLGGSVLGFSSADSSSAAKGESVADTIRVISSYADICAMRHPKEGAPLVASTYSSIPVINAGDGGHNHPTQTLTDLLTIKNLKGRLDNLTIGFCGD 157          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: PYRB_PARD8 (Aspartate carbamoyltransferase OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=pyrB PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.829e-11
Identity = 57/178 (32.02%), Postives = 87/178 (48.88%), Query Frame = 1
Query:  271 ISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAI-YLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYN-HPCQIMADALTIIEHVGRLEGTKVVYVGD--GNNVVHSWLL-MASVIP-FHFV 786
            I    K  I++ILD A + +   ++ +R  L  +GK  + +F +PS RTR+SFET  + LGG  I +         K E  +D   ++  Y D+I+ R          ++   VP+IN     N HP Q M D  +I +  G+L+   +  VGD      VHS ++ M+   P FHFV
Sbjct:    9 IDQCSKEDILRILDNARKFE---ENPNRKLL--EGKVAATLFFEPSTRTRLSFETAVNRLGGRVIGFSDASTTSSSKGETLKDTILMVSNYVDLIIMRHHLEGAARYASEVTDVPIINAGDGANQHPSQTMLDLYSIRKTQGKLDNLTITMVGDLKYGRTVHSLIVGMSHFHPTFHFV 181          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: PYRB_METPE (Aspartate carbamoyltransferase OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=pyrB PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.829e-11
Identity = 51/158 (32.28%), Postives = 80/158 (50.63%), Query Frame = 1
Query:  259 DFLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGP-DDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVIN-GLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGD 726
            DF+ I DFD+A I +++  A  +           L  KGK ++++F +PS RTR+SFE   + LGG ++ L   +   M K E   D  RV+  Y D I+ R          ++ ++VPVIN G     HP Q + D  TI + +  ++G  +  +GD
Sbjct:    3 DFISIRDFDRAAIDRLIAEAERID----HHQYDPLEMKGKILALLFFEPSTRTRMSFEAAMARLGGTSLTLSSFEASSMAKGETLADTIRVVSGYVDAIVLRHPREGAARLASEVSSVPVINAGDGAGQHPSQTLLDLYTIRQSM-PIDGINIGLLGD 155          
The following BLAST results are available for this feature:
BLAST of FC878130 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PYRB_CLOP19.722e-1235.83Aspartate carbamoyltransferase OS=Clostridium perf... [more]
PYRB3_SHEHH9.722e-1233.15Aspartate carbamoyltransferase 3 OS=Shewanella hal... [more]
PYRB_TOLAT1.270e-1131.18Aspartate carbamoyltransferase OS=Tolumonas auensi... [more]
PYRB_SALTO1.658e-1130.41Aspartate carbamoyltransferase OS=Salinispora trop... [more]
PYRB_SACD21.658e-1133.71Aspartate carbamoyltransferase OS=Saccharophagus d... [more]
PYRB_PICTO1.658e-1130.99Aspartate carbamoyltransferase OS=Picrophilus torr... [more]
OTCC_STRPY1.658e-1142.11Ornithine carbamoyltransferase, catabolic (Fragmen... [more]
PYRB_CLOPH2.166e-1135.54Aspartate carbamoyltransferase OS=Clostridium phyt... [more]
PYRB_PARD82.829e-1132.02Aspartate carbamoyltransferase OS=Parabacteroides ... [more]
PYRB_METPE2.829e-1132.28Aspartate carbamoyltransferase OS=Methanosphaerula... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ12YE24RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ12YE24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878130 ID=FC878130; Name=FC878130; organism=Citrus clementina; type=EST; length=809bp
GCTTGTTACCAGTTCCCACCAAAATCAATGGCGGCGATTTCAAGTTGCTG
TACATATCGATCGGGCAAAATGCCTCTATCCGCTTCTTCTTCTTCTTCTT
TCTCCGGAAAGTTTCTCCCGAAACAATCGCGATTTCCTGCCACGTCGGCG
TCTGCTGCCCTGACATTTCCGGTCCTCCGAAGAAGCATCACGTGCCAGGC
ATCCTCGGCCACGTCAGCTCCTAATTCCATCCACGGCAAACCAAAAGCAG
AGCAGACGGATTTTCTGCACATCAGCGATTTTGACAAAGCTACCATAATG
AAGATTTTAGACCGAGCTGCTGAGGTCAAGGCACTACTTAAGTCAGGGGA
TAGGTCATTTTTGCCGTTTAAAGGGAAGACAATGTCTATGATCTTTGCAA
AGCCATCCATGAGAACTCGGGTTTCATTTGAAACAGGGTTTTCCTTGTTG
GGAGGCCATGCTATATACTTAGGACCTGATGATATCCAGATGGGAAAGAG
AGAGGAAACACGTGACGCTGCTCGTGTTCTATGTCGCTACAATGATATTA
TTATGGCACGTGTTTTTGGTCATCAGGACATTCTTGATCTCGCTAAATTT
GCAACTGTACCAGTTATCAATGGCTTGACAGACTACAACCATCCTTGCCA
AATAATGGCTGATGCCCTCACCATTATTGAACACGTTGGTCGTCTGGAAG
GAACCAAGGTTGTCTATGTTGGAGATGGAAATAACGTAGTGCACTCTTGG
CTTTTGATGGCATCAGTTATTCCTTTCCACTTTGTTTGTGCCTGCCCCAA
AGGTTTTGA
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