FC878130

Overview
NameFC878130
Unique NameFC878130
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length809
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_RHIME (Ornithine carbamoyltransferase OS=Rhizobium meliloti GN=argF PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.945e-36
Identity = 81/181 (44.75%), Postives = 110/181 (60.77%), Query Frame = 1
Query:  262 FLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACPKG 804
            FL +S      +  I+D A   K+  K+G     P  GK ++MIF KPS RTRVSF+ G   LGG  ++L   ++Q+G+ E   D A+VL RY D IM R   H+ +L++A+ ATVPVINGLTD  HPCQIMAD LT  EH G ++G  + + GDGNNV+HS +  ++   +    A P G
Sbjct:    5 FLDLSAMTATDLRTIIDDARVRKSATKAGTAE-KPLAGKMLAMIFEKPSTRTRVSFDVGMRQLGGETLFLSGTEMQLGRAETIGDTAKVLSRYVDAIMIRTTDHRRLLEMAEHATVPVINGLTDDTHPCQIMADILTFEEHRGPVKGKTIAWTGDGNNVLHSLIEGSARFGYRMNMAVPLG 184          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_METHJ (Ornithine carbamoyltransferase OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=argF PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.945e-36
Identity = 79/183 (43.17%), Postives = 112/183 (61.20%), Query Frame = 1
Query:  259 DFLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACPKGF 807
            DF+ I D  +  +  ++  A ++K   + G ++ +    KT+ MIF K S RTR+SFE G   LGGHA++L P D+Q+G+ E  RD ARV+ R+   IM R   H ++L+LA  A +PVINGL+D  HPCQI+AD +TI E + R EG KV ++GDGNNV  S +L   +     + A P  F
Sbjct:    4 DFISILDISREELANLIAHARKLKEERRVGIQTPV-LAHKTLGMIFEKSSTRTRISFEAGMFELGGHALFLNPKDMQLGRGEAIRDTARVMSRFVSAIMIRANRHDEVLELAAHADIPVINGLSDREHPCQILADIMTIEERLFRTEGVKVAWIGDGNNVCTSLILSTILTGMEVIVASPSEF 185          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_ROSDO (Ornithine carbamoyltransferase OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=argF PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.541e-36
Identity = 86/184 (46.74%), Postives = 110/184 (59.78%), Query Frame = 1
Query:  262 FLHISDFDKATIMKILDRAAEVKALLKSGDRSF----LPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACPK 801
            FL I   D A + +I+D+AA +K+  K   R       P K + +++IF KPS RTRVSF+ G   +GG  + L   D+Q+G  E   D ARVL RY D+IM R F    + ++A+FATVPVINGLTD  HPCQIMAD LT  EH G + G KVV+ GDGNNV  S+L  A    F      P+
Sbjct:    4 FLDIHLTDPADLREIIDQAAIMKSARKGRPRGAPDDTQPLKDRIVALIFEKPSTRTRVSFDVGVRQMGGQTMVLSGADMQLGHGETIADTARVLSRYVDLIMIRTFDEAVLTEMAEFATVPVINGLTDRTHPCQIMADILTFEEHRGPIAGKKVVWSGDGNNVCASFLHAAGQFGFDLTFTGPQ 187          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_HUMAN (Ornithine carbamoyltransferase, mitochondrial OS=Homo sapiens GN=OTC PE=1 SV=3)

HSP 1 Score: 152.525 bits (384), Expect = 2.541e-36
Identity = 79/193 (40.93%), Postives = 116/193 (60.10%), Query Frame = 1
Query:  229 IHGKPKAEQTDFLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACPKGF 807
            +  K + +  D L + +F    I  +L  +A++K  +K         +GK++ MIF K S RTR+S ETGF+LLGGH  +L   DI +G  E   D ARVL    D ++ARV+   D+  LAK A++P+INGL+D  HP QI+AD LT+ EH   L+G  + ++GDGNN++HS ++ A+    H   A PKG+
Sbjct:   31 LQNKVQLKGRDLLTLKNFTGEEIKYMLWLSADLKFRIKQKGEYLPLLQGKSLGMIFEKRSTRTRLSTETGFALLGGHPCFLTTQDIHLGVNESLTDTARVLSSMADAVLARVYKQSDLDTLAKEASIPIINGLSDLYHPIQILADYLTLQEHYSSLKGLTLSWIGDGNNILHSIMMSAAKFGMHLQAATPKGY 223          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_SHEEP (Ornithine carbamoyltransferase, mitochondrial OS=Ovis aries GN=OTC PE=1 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 3.318e-36
Identity = 79/183 (43.17%), Postives = 112/183 (61.20%), Query Frame = 1
Query:  259 DFLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACPKGF 807
            D L + +F    I  +L  +A++K  +K         +GK++ MIF K S RTR+S ETGF+LLGGH  +L   DI +G  E   D ARVL    D ++ARV+   D+  LAK A++PVINGL+D  HP QI+AD LT+ EH   L+G  + ++GDGNN++HS ++ A+    H   A PKG+
Sbjct:    7 DLLTLKNFTGEEIKYMLWLSADLKFRIKQKGEYLPLLQGKSLGMIFEKRSTRTRLSTETGFALLGGHPCFLTTQDIHLGVNESLTDTARVLSSMADAVLARVYKQSDLETLAKEASIPVINGLSDLYHPIQILADYLTLQEHYSSLKGLTLSWIGDGNNILHSIMMSAAKFGMHLQAATPKGY 189          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_SYNPX (Ornithine carbamoyltransferase OS=Synechococcus sp. (strain WH8102) GN=argF PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 4.334e-36
Identity = 80/183 (43.72%), Postives = 109/183 (59.56%), Query Frame = 1
Query:  259 DFLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACPKGF 807
            D+L  +D        +LD AA+    LKSGDR  +    + + +IF K S RTRVSF+   + LGG  + L P   Q+G+ E   D ARVL RY D++  R F  Q+++D A +ATVPVIN LTD  HPCQ +AD LT+ E  G L G  + Y+GDGNNV HS +L  +++  +    CP+GF
Sbjct:   19 DYLSSADCSAEETSAVLDLAAQ----LKSGDRR-IDLGNRVLGLIFTKASTRTRVSFQVAMARLGGQTVDLNPKVTQLGRGEPLEDTARVLSRYCDVLAVRTFAQQELVDYAHWATVPVINALTDLEHPCQSLADFLTMREAHGDLPGQTLAYIGDGNNVAHSLMLCGALLGVNVRIGCPQGF 196          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_METST (Ornithine carbamoyltransferase OS=Methanosphaera stadtmanae (strain DSM 3091) GN=argF PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 4.334e-36
Identity = 75/162 (46.30%), Postives = 104/162 (64.20%), Query Frame = 1
Query:  322 EVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACPKGF 807
            E+ + LKSG+ +  P   K + MIF K S RTRVSFE G   LGG  +YL   D+Q+ + E   D ARVL R+ D IM R   H+++ +L +++T+P+I+GLTD  HPCQI AD LTI E+ G     K+V++GDGNNV +S LL A+ +      ACP+G+
Sbjct:   19 EIASGLKSGEITEKPLTNKYIGMIFEKSSTRTRVSFEVGIHQLGGTPLYLSSKDLQLNRGEPIEDTARVLSRFLDGIMIRAKKHENVEELVQYSTIPIISGLTDKEHPCQIFADLLTIKEYKGDFNDKKIVFIGDGNNVCNSLLLAAAYVGMDMTVACPEGY 180          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_CUPTR (Ornithine carbamoyltransferase OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=arcB PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 4.334e-36
Identity = 82/183 (44.81%), Postives = 114/183 (62.30%), Query Frame = 1
Query:  262 FLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILD-LAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACPKGF 807
            +L  SDF       +LDRA  +KA  K+ + ++ P   +T++MIF K S RTR+SFE G   LGGHA++L   D Q+G+ E   DAA+V+ R  DIIM R FG QDI+D  A  + VPVINGLT+  HPCQ++AD  T IE  G + G  V ++GD NN+ ++W+  A  + F F  + P G+
Sbjct:    9 YLQFSDFTPDEYEYLLDRARILKAKFKNYE-TWHPLHDRTLAMIFEKNSTRTRLSFEAGIHQLGGHAVFLNTRDSQLGRGEPIEDAAQVISRMVDIIMIRTFG-QDIIDRFAAHSRVPVINGLTNEYHPCQVLADVFTYIEQRGSIRGKTVAWIGDANNMAYTWIQAAERLGFTFHFSAPPGY 189          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_BRAJA (Ornithine carbamoyltransferase OS=Bradyrhizobium japonicum GN=argF PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 4.334e-36
Identity = 82/179 (45.81%), Postives = 109/179 (60.89%), Query Frame = 1
Query:  262 FLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACP 798
            FL I++   + +  +LD ++ +KA  K+  +   P +GKT++MIF +PS RTRVSF+     LGG  I L   ++Q+G+ E   D ARVL RY D IM R+  H  +L+LA  ATVPVINGLT  +HPCQ+MAD LT  EH G +EG  V + GD NNV+ SW   A    F    A P
Sbjct:    8 FLDINELPLSELKSMLDASSAMKAKQKA-HQPVRPLEGKTLAMIFERPSTRTRVSFDVAMRQLGGEPIMLTGAEMQLGRGETIADTARVLSRYVDAIMIRILNHDALLELAANATVPVINGLTRRSHPCQVMADLLTYQEHRGPIEGRTVAWTGDDNNVLASWAHAAERFKFQLNVATP 185          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_RALME (Ornithine carbamoyltransferase OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=argF PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 5.660e-36
Identity = 79/182 (43.41%), Postives = 111/182 (60.99%), Query Frame = 1
Query:  262 FLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACPKGF 807
            +L  SD        +LDRA  +KA  K+ + ++ P   +T++MIF K S RTR+SFE G   LGGHA++L   D Q+G+ E   DAA+V+ R  DIIM R FG + I   AK + VPVINGLT+  HPCQ++AD  T IE  G + G  V ++GD NN+ ++W+  A  + F F  + P G+
Sbjct:    9 YLQFSDLSADEYEYLLDRARILKAKFKNYE-TWHPLHDRTLAMIFEKNSTRTRLSFEAGIHQLGGHAVFLNTRDSQLGRGEPIEDAAQVISRMVDIIMIRTFGQEIIDRFAKHSRVPVINGLTNEYHPCQVLADVFTYIEQRGTIAGKTVAWIGDANNMAYTWIQAAERLDFTFHFSAPPGY 189          
The following BLAST results are available for this feature:
BLAST of FC878130 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
OTC_RHIME1.945e-3644.75Ornithine carbamoyltransferase OS=Rhizobium melilo... [more]
OTC_METHJ1.945e-3643.17Ornithine carbamoyltransferase OS=Methanospirillum... [more]
OTC_ROSDO2.541e-3646.74Ornithine carbamoyltransferase OS=Roseobacter deni... [more]
OTC_HUMAN2.541e-3640.93Ornithine carbamoyltransferase, mitochondrial OS=H... [more]
OTC_SHEEP3.318e-3643.17Ornithine carbamoyltransferase, mitochondrial OS=O... [more]
OTC_SYNPX4.334e-3643.72Ornithine carbamoyltransferase OS=Synechococcus sp... [more]
OTC_METST4.334e-3646.30Ornithine carbamoyltransferase OS=Methanosphaera s... [more]
OTC_CUPTR4.334e-3644.81Ornithine carbamoyltransferase OS=Cupriavidus taiw... [more]
OTC_BRAJA4.334e-3645.81Ornithine carbamoyltransferase OS=Bradyrhizobium j... [more]
OTC_RALME5.660e-3643.41Ornithine carbamoyltransferase OS=Ralstonia metall... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ12YE24RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ12YE24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878130 ID=FC878130; Name=FC878130; organism=Citrus clementina; type=EST; length=809bp
GCTTGTTACCAGTTCCCACCAAAATCAATGGCGGCGATTTCAAGTTGCTG
TACATATCGATCGGGCAAAATGCCTCTATCCGCTTCTTCTTCTTCTTCTT
TCTCCGGAAAGTTTCTCCCGAAACAATCGCGATTTCCTGCCACGTCGGCG
TCTGCTGCCCTGACATTTCCGGTCCTCCGAAGAAGCATCACGTGCCAGGC
ATCCTCGGCCACGTCAGCTCCTAATTCCATCCACGGCAAACCAAAAGCAG
AGCAGACGGATTTTCTGCACATCAGCGATTTTGACAAAGCTACCATAATG
AAGATTTTAGACCGAGCTGCTGAGGTCAAGGCACTACTTAAGTCAGGGGA
TAGGTCATTTTTGCCGTTTAAAGGGAAGACAATGTCTATGATCTTTGCAA
AGCCATCCATGAGAACTCGGGTTTCATTTGAAACAGGGTTTTCCTTGTTG
GGAGGCCATGCTATATACTTAGGACCTGATGATATCCAGATGGGAAAGAG
AGAGGAAACACGTGACGCTGCTCGTGTTCTATGTCGCTACAATGATATTA
TTATGGCACGTGTTTTTGGTCATCAGGACATTCTTGATCTCGCTAAATTT
GCAACTGTACCAGTTATCAATGGCTTGACAGACTACAACCATCCTTGCCA
AATAATGGCTGATGCCCTCACCATTATTGAACACGTTGGTCGTCTGGAAG
GAACCAAGGTTGTCTATGTTGGAGATGGAAATAACGTAGTGCACTCTTGG
CTTTTGATGGCATCAGTTATTCCTTTCCACTTTGTTTGTGCCTGCCCCAA
AGGTTTTGA
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