FC878143

Overview
NameFC878143
Unique NameFC878143
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length848
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878143 vs. ExPASy Swiss-Prot
Match: TLP6_ORYSJ (Tubby-like F-box protein 6 OS=Oryza sativa subsp. japonica GN=TULP6 PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 5.429e-57
Identity = 75/140 (53.57%), Postives = 98/140 (70.00%), Query Frame = 3
Query:  195 MSFRSIVRDVRDSFGSLSRRSFDFRLTXXXXXXXXXXXNDLHDQNIVIQNSCWASLPPELLCDVIKRLEESESSWPARKHVVACAAVCRSWRAMCKEIVRSPEFCGKLTFPVSLKQPGARDGTIQCFIKRDKSNLTYHLF 614
            MSFRS+++++RD FGS+SR S   R                 +    +Q SCWA LPPELL +V+ R+EESE  WP+R+ VVACA VCRSWR + KEIVR PE  GKLTFP+SLKQPG RDGT++CFI+R+++  TY+L+
Sbjct:    1 MSFRSLIQEMRDEFGSISRHSLRSRSHRGGGGAPRVAAVGPAEA-AAMQQSCWAQLPPELLREVLVRIEESEVWWPSRRDVVACAGVCRSWRGITKEIVRVPEASGKLTFPISLKQPGPRDGTLKCFIRRNRTTQTYYLY 139          

HSP 2 Score: 88.9669 bits (219), Expect = 5.429e-57
Identity = 38/68 (55.88%), Postives = 55/68 (80.88%), Query Frame = 2
Query:  635 LVENGKFLLSAKRTRRTTCTEYVISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPHTSANITPS 838
            L ++GKFLL+A++ R+ TCT+Y+IS+D  ++S+ S+TYIGKLRSNFLGTKF +YD  PP+  A ++ S
Sbjct:  146 LADDGKFLLAARKCRKPTCTDYLISLDMSDMSKGSNTYIGKLRSNFLGTKFTVYDAHPPYDGAVVSKS 213          
BLAST of FC878143 vs. ExPASy Swiss-Prot
Match: TLP11_ORYSJ (Tubby-like F-box protein 11 OS=Oryza sativa subsp. japonica GN=TULP11 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 6.985e-54
Identity = 68/142 (47.89%), Postives = 95/142 (66.90%), Query Frame = 3
Query:  195 MSFRSIVRDVRDSFGSLSRRSFDFR--LTXXXXXXXXXXXNDLHDQNIVIQNSCWASLPPELLCDVIKRLEESESSWPARKHVVACAAVCRSWRAMCKEIVRSPEFCGKLTFPVSLKQPGARDGTIQCFIKRDKSNLTYHLF 614
            MSFRS++++V+   G++SRR F  R               ++     +V++ SCW  LPPELL +V+ R+EESE  WP R+ VVACA VCRSWR + +EIVR+PE  G LTFP+SLKQPG RD  ++CFI R+++  TY+L+
Sbjct:    1 MSFRSVIQEVKGEIGAISRRGFRSRPGRVRRVAAAAEEPPDESSAAALVMRESCWTQLPPELLREVLARVEESEGWWPRRRDVVACAGVCRSWRGIVREIVRTPEASGNLTFPISLKQPGPRDAPMKCFIVRNRTTQTYYLY 142          

HSP 2 Score: 88.9669 bits (219), Expect = 6.985e-54
Identity = 38/60 (63.33%), Postives = 52/60 (86.67%), Query Frame = 2
Query:  635 LVENGKFLLSAKRTRRTTCTEYVISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPH 814
            L ++GKFLL+A++ RRTTCTEY+IS+D ++IS+ + +Y+GKLRSNFLGTKF IYD  PP+
Sbjct:  149 LTDDGKFLLAARKCRRTTCTEYLISLDMNDISKRTDSYVGKLRSNFLGTKFTIYDAHPPY 208          
BLAST of FC878143 vs. ExPASy Swiss-Prot
Match: TLP2_ARATH (Tubby-like F-box protein 2 OS=Arabidopsis thaliana GN=TULP2 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 4.470e-53
Identity = 76/143 (53.15%), Postives = 94/143 (65.73%), Query Frame = 3
Query:  195 MSFRSIVRD---VRDSFGSLSRRSFDFRLTXXXXXXXXXXXNDLHDQNIVIQNSCWASLPPELLCDVIKRLEESESSWPARKHVVACAAVCRSWRAMCKEIVRSPEFCGKLTFPVSLKQPGARDGTIQCFIKRDKSNLTYHLF 614
            MS +SI+RD   VRD  G +S+RS+                N        I  S WASLPPELL D+I R+EESE++WPAR  VV+CA+VC+SWR +  EIVR PE CGKLTFP+SLKQPG RD  IQCFIKR+++  TY L+
Sbjct:    1 MSLKSILRDLKEVRDGLGGISKRSWSKSSHIAPDQTTPPLDN--------IPQSPWASLPPELLHDIIWRVEESETAWPARAAVVSCASVCKSWRGITMEIVRIPEQCGKLTFPISLKQPGPRDSPIQCFIKRNRATATYILY 135          

HSP 2 Score: 86.2705 bits (212), Expect = 4.470e-53
Identity = 40/66 (60.61%), Postives = 50/66 (75.76%), Query Frame = 2
Query:  641 ENGKFLLSAKRTRRTTCTEYVISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPHTSANITPS 838
            EN K LL+A+R RR TCT+++IS+ A N SRSSSTY+GKLRS FLGTKF IYD Q   ++A   P+
Sbjct:  144 ENDKLLLAARRIRRATCTDFIISLSAKNFSRSSSTYVGKLRSGFLGTKFTIYDNQTASSTAQAQPN 209          
BLAST of FC878143 vs. ExPASy Swiss-Prot
Match: TLP5_ORYSJ (Tubby-like F-box protein 5 OS=Oryza sativa subsp. japonica GN=TULP5 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 8.960e-51
Identity = 74/159 (46.54%), Postives = 100/159 (62.89%), Query Frame = 3
Query:  195 MSFRSIVRDVR---DSFGSLSRRSFDFRL------------TXXXXXXXXXXXNDLHDQNIVIQNSCWASLPPELLCDVIKRLEESESSWPARKHVVACAAVCRSWRAMCKEIVRSPEFCGKLTFPVSLKQPGARDGTIQCFIKRDKSNLTYHLFCVLA 626
            MS +SIVR++R   D  GS+SRR+ D R                           L  Q    Q   WA+LPPELL DVI+R+E SE++WPAR+ VVACAAVCRSWR + KE+V++ E CG++TFP+SLKQPG R+  +QCF++RD++  TY L+  L+
Sbjct:    1 MSLKSIVRELREMRDGIGSMSRRAADGRAGGGRGGSRHSWPVLWSEQQQPPQQQQLQRQEHQQQQGRWANLPPELLLDVIQRVEASEATWPARRQVVACAAVCRSWREVTKEVVKTLEECGRITFPISLKQPGPREHPVQCFVRRDRATSTYLLYLGLS 159          

HSP 2 Score: 80.8777 bits (198), Expect = 8.960e-51
Identity = 39/67 (58.21%), Postives = 53/67 (79.10%), Query Frame = 2
Query:  611 FLCLSPALLVENGKFLLSAKRTRRTTCTEYVISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPP 811
            +L LSP+L  EN K LL+A++ RR T T +VIS+ +++ S SSSTY+GKL+ NFLGTKF I+D+QPP
Sbjct:  155 YLGLSPSLHGENDKLLLAARKIRRATRTSFVISLVSNDFSLSSSTYVGKLKPNFLGTKFTIFDSQPP 221          
BLAST of FC878143 vs. ExPASy Swiss-Prot
Match: TLP6_ARATH (Tubby-like F-box protein 6 OS=Arabidopsis thaliana GN=TULP6 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 2.340e-48
Identity = 53/97 (54.64%), Postives = 71/97 (73.20%), Query Frame = 3
Query:  336 IQNSCWASLPPELLCDVIKRLEESESSWPARKHVVACAAVCRSWRAMCKEIVRSPEFCGKLTFPVSLKQPGARDGTIQCFIKRDKSNLTYHLFCVLA 626
            +  S W  LPPELL D+I+R+E  +S WP R+ VVACA+VC+SWR M KE+V+ PE  G +TFP+SL+QPG RD  IQCFIKR+++   Y L+  L+
Sbjct:   64 LNQSIWVDLPPELLLDIIQRIESEQSLWPGRRDVVACASVCKSWREMTKEVVKVPELSGLITFPISLRQPGPRDAPIQCFIKRERATGIYRLYLGLS 160          

HSP 2 Score: 90.1225 bits (222), Expect = 2.340e-48
Identity = 44/76 (57.89%), Postives = 55/76 (72.37%), Query Frame = 2
Query:  611 FLCLSPALLVENGKFLLSAKRTRRTTCTEYVISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPHTSANITPS 838
            +L LSPAL  +  K LLSAKR RR T  E+V+S+  ++ SRSSS YIGKLRSNFLGTKF +Y+ QPP  +  + PS
Sbjct:  156 YLGLSPALSGDKSKLLLSAKRVRRATGAEFVVSLSGNDFSRSSSNYIGKLRSNFLGTKFTVYENQPPPFNRKLPPS 231          
BLAST of FC878143 vs. ExPASy Swiss-Prot
Match: TLP9_ARATH (Tubby-like F-box protein 9 OS=Arabidopsis thaliana GN=TULP9 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 4.120e-41
Identity = 50/89 (56.18%), Postives = 67/89 (75.28%), Query Frame = 3
Query:  351 WASLPPELLCDVIKRLEESESS-WPARKHVVACAAVCRSWRAMCKEIVRSPEFCGKLTFPVSLKQPGARDGTIQCFIKRDKSNLTYHLF 614
            W+ LP ELL +++ R+E  +   WP+R++VVACA VCRSWR + KEIV  PEF  KLTFP+SLKQ G RD  +QCFIKR+++  +YHL+
Sbjct:   33 WSELPEELLREILIRVETVDGGDWPSRRNVVACAGVCRSWRILTKEIVAVPEFSSKLTFPISLKQSGPRDSLVQCFIKRNRNTQSYHLY 121          

HSP 2 Score: 77.0258 bits (188), Expect = 4.120e-41
Identity = 31/55 (56.36%), Postives = 47/55 (85.45%), Query Frame = 2
Query:  635 LVENGKFLLSAKRTRRTTCTEYVISMDADNISRSSSTYIGKLRSNFLGTKFIIYD 799
            L +NGKFLL+A + +R TCT+Y+IS+ +D+IS+ S+ Y+G++RSNFLGTKF ++D
Sbjct:  128 LTDNGKFLLAASKLKRATCTDYIISLRSDDISKRSNAYLGRMRSNFLGTKFTVFD 182          
BLAST of FC878143 vs. ExPASy Swiss-Prot
Match: TLP9_ORYSJ (Tubby-like F-box protein 9 OS=Oryza sativa subsp. japonica GN=TULP9 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.017e-40
Identity = 45/91 (49.45%), Postives = 62/91 (68.13%), Query Frame = 3
Query:  351 WASLPPELLCDVIKRLEESESSWPARKHVVACAAVCRSWRAMCKEIVRSPEFCGKLTFPVSLKQPGARDGTIQCFIKRDKSNLTYHLFCVL 623
            W+ L PELL ++++R++     WP R+ VVACA VCR WR     +VR P  CG++TFP SLKQPG RD  + CFI+R+K N T++L+  L
Sbjct:   52 WSRLLPELLTEIMRRVDAGAERWPPRRDVVACACVCRRWRDAAVSVVRPPLECGRITFPSSLKQPGPRDAPMHCFIRRNKKNSTFYLYLSL 142          

HSP 2 Score: 81.6481 bits (200), Expect = 2.017e-40
Identity = 40/71 (56.34%), Postives = 54/71 (76.06%), Query Frame = 2
Query:  611 FLCLSPALLVENGKFLLSAKRTRRTTCTEYVISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPHTSA 823
            +L L+ AL  + GKFLL+A+R R    TEY+IS D D++   S++Y+GKLRS+FLGTKFIIYD+QPP+  A
Sbjct:  139 YLSLTQAL-TDKGKFLLAARRFRNGAHTEYIISYDCDDLFPGSNSYVGKLRSDFLGTKFIIYDSQPPYDGA 208          
BLAST of FC878143 vs. ExPASy Swiss-Prot
Match: TLP1_ORYSJ (Tubby-like F-box protein 1 OS=Oryza sativa subsp. japonica GN=TULP1 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.286e-39
Identity = 50/93 (53.76%), Postives = 64/93 (68.82%), Query Frame = 3
Query:  339 QNSCWASLPPELLCDVIKRLEESESS-WPARKHVVACAAVCRSWRAMCKEIVRSPEFCGKLTFPVSLKQPGARDGTIQCFIKRDKSNLTYHLF 614
            Q   WA L PEL+ +V++R+E S    WPARK VV+CA VCR WR     +VR P   GK+TFP SLKQPG R+  +QCFIKR+K N T++L+
Sbjct:   30 QEERWARLLPELMSEVVRRVEASGGERWPARKDVVSCACVCRRWRDAAVAVVRPPAESGKITFPSSLKQPGPREFPMQCFIKRNKKNSTFYLY 122          

HSP 2 Score: 78.9518 bits (193), Expect = 1.286e-39
Identity = 35/67 (52.24%), Postives = 52/67 (77.61%), Query Frame = 2
Query:  638 VENGKFLLSAKRTRRTTCTEYVISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPHTSANITPS 838
            V+ GKFL++A+R RR   TEY++S+DAD++S+ S+ Y+GKLRS+F GT F IYD++PP+  A  + S
Sbjct:  130 VDKGKFLMAARRFRRGPHTEYIVSLDADDLSQGSNAYMGKLRSDFWGTNFKIYDSKPPYDGAKASSS 196          
BLAST of FC878143 vs. ExPASy Swiss-Prot
Match: TLP7_ARATH (Tubby-like F-box protein 7 OS=Arabidopsis thaliana GN=TULP7 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.067e-38
Identity = 43/94 (45.74%), Postives = 62/94 (65.96%), Query Frame = 3
Query:  342 NSCWASLPPELLCDVIKRLEESESSWPARKHVVACAAVCRSWRAMCKEIVRSPEFCGKLTFPVSLKQPGARDGTIQCFIKRDKSNLTYHLFCVL 623
            +S W+++ PELL ++I+R+EE+E  WP R+ VV CA V + WR +  +  RS    GK+TFP  LK PG RD + QC IKR+K   T++L+  L
Sbjct:   41 SSSWSAMLPELLGEIIRRVEETEDRWPQRRDVVTCACVSKKWREITHDFARSSLNSGKITFPSCLKLPGPRDFSNQCLIKRNKKTSTFYLYLAL 134          

HSP 2 Score: 85.8853 bits (211), Expect = 1.067e-38
Identity = 39/71 (54.93%), Postives = 54/71 (76.06%), Query Frame = 2
Query:  611 FLCLSPALLVENGKFLLSAKRTRRTTCTEYVISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPHTSA 823
            +L L+P+   + GKFLL+A+R R    TEY+IS+DAD+ S+ S+ Y+GKLRS+FLGT F +YD+QPPH  A
Sbjct:  131 YLALTPSF-TDKGKFLLAARRFRTGAYTEYIISLDADDFSQGSNAYVGKLRSDFLGTNFTVYDSQPPHNGA 200          
BLAST of FC878143 vs. ExPASy Swiss-Prot
Match: TLP11_ARATH (Tubby-like F-box protein 11 OS=Arabidopsis thaliana GN=TULP11 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.810e-38
Identity = 47/93 (50.54%), Postives = 65/93 (69.89%), Query Frame = 3
Query:  339 QNSCWASLPPELLCDVIKRLEESESS-WPARKHVVACAAVCRSWRAMCKEIVRSPEFCGKLTFPVSLKQPGARDGTIQCFIKRDKSNLTYHLF 614
            Q+  W+ +P ELL +++ R+E ++   WP+R+ VVACA VCR WR +  E V  PE   KLTFP+SLKQPG RD  +QCFIKR++   +YHL+
Sbjct:   35 QDYRWSEIPEELLREILIRVEAADGGGWPSRRSVVACAGVCRGWRLLMNETVVVPEISSKLTFPISLKQPGPRDSLVQCFIKRNRITQSYHLY 127          

HSP 2 Score: 74.7146 bits (182), Expect = 1.810e-38
Identity = 31/55 (56.36%), Postives = 46/55 (83.64%), Query Frame = 2
Query:  635 LVENGKFLLSAKRTRRTTCTEYVISMDADNISRSSSTYIGKLRSNFLGTKFIIYD 799
            L ++GKFLL+A + + TTCT+Y+IS+ +D++SR S  Y+GK+RSNFLGTKF ++D
Sbjct:  134 LTDDGKFLLAACKLKHTTCTDYIISLRSDDMSRRSQAYVGKVRSNFLGTKFTVFD 188          
The following BLAST results are available for this feature:
BLAST of FC878143 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
TLP6_ORYSJ5.429e-5753.57Tubby-like F-box protein 6 OS=Oryza sativa subsp. ... [more]
TLP11_ORYSJ6.985e-5447.89Tubby-like F-box protein 11 OS=Oryza sativa subsp.... [more]
TLP2_ARATH4.470e-5353.15Tubby-like F-box protein 2 OS=Arabidopsis thaliana... [more]
TLP5_ORYSJ8.960e-5146.54Tubby-like F-box protein 5 OS=Oryza sativa subsp. ... [more]
TLP6_ARATH2.340e-4854.64Tubby-like F-box protein 6 OS=Arabidopsis thaliana... [more]
TLP9_ARATH4.120e-4156.18Tubby-like F-box protein 9 OS=Arabidopsis thaliana... [more]
TLP9_ORYSJ2.017e-4049.45Tubby-like F-box protein 9 OS=Oryza sativa subsp. ... [more]
TLP1_ORYSJ1.286e-3953.76Tubby-like F-box protein 1 OS=Oryza sativa subsp. ... [more]
TLP7_ARATH1.067e-3845.74Tubby-like F-box protein 7 OS=Arabidopsis thaliana... [more]
TLP11_ARATH1.810e-3850.54Tubby-like F-box protein 11 OS=Arabidopsis thalian... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA3CA11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA3CA11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878143 ID=FC878143; Name=FC878143; organism=Citrus clementina; type=EST; length=848bp
TTAGTTTATGTTATGTTACCAGCTATGTTCTGTTTCTGACTTGACTTTGC
AGATATTGAGATCTTTTGGTGGTGCTTGGAGTCTTTGACCAGCTTTATTT
AACAGCCATAAATACATGACTTGTAGAATATAATTTATCGGAAGTCTTCA
AAAGGGTGATATACTTGTGCTGCTGCTTCTGAATAATTTATAAGATGTCA
TTCCGTAGCATAGTACGTGATGTAAGAGATAGTTTCGGGAGTTTATCTAG
AAGAAGTTTCGATTTTAGATTGACTGGCCATCATGGAGGGAAATCCCATG
GTTCGTCAAACGATTTGCATGACCAGAATATTGTAATTCAAAATAGTTGT
TGGGCTAGTCTCCCACCAGAGCTACTTTGTGATGTAATCAAGAGGTTGGA
GGAGAGTGAGAGTTCTTGGCCCGCTCGAAAACATGTTGTTGCGTGTGCTG
CTGTTTGCCGTTCTTGGAGGGCTATGTGCAAAGAAATTGTTAGAAGTCCA
GAGTTCTGTGGGAAGCTTACTTTCCCAGTGTCCTTGAAGCAGCCTGGGGC
ACGTGATGGAACCATTCAATGTTTCATTAAGAGGGATAAATCTAATTTAA
CATATCACCTTTTTTGTGTCTTAGCCCTGCTTTACTAGTTGAAAATGGAA
AATTCCTTCTGTCCGCGAAAAGGACCCGTCGAACTACTTGTACAGAGTAT
GTAATCTCCATGGATGCTGACAACATTTCAAGATCAAGCAGCACTTATAT
CGGAAAGTTGAGGTCAAATTTCCTTGGGACAAAATTTATAATATATGACA
CACAGCCACCACATACCTCTGCTAATATTACCCCTTCGGGATGTACAA
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