FC878149
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC878149 vs. ExPASy Swiss-Prot
Match: TOP6A_PYRFU (Type II DNA topoisomerase VI subunit A OS=Pyrococcus furiosus GN=top6A PE=3 SV=1) HSP 1 Score: 150.214 bits (378), Expect = 1.435e-35 Identity = 84/280 (30.00%), Postives = 145/280 (51.79%), Query Frame = 1 Query: 31 VQSTIETLILQIARSILAGNGFSFQVPSRASSNQLYVPELDRIVLKDKTTLRPFASLSTVRKSTITVKILSLIHQLCLRNIHVTKRDLFY--------TDVKLFQDQTQSDAVLDDVACILGCTRSSLNVIAAEKGVVVGRLTFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMKSDAMFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALVDSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKY 846 V +E L +I + AG F VP+R SN + E I L DK + R F +++ RK T+ +++ + +L H + R+ +Y T F+DQ++SD +++D+ +LG R +++ A +G V G + D D + +K+GMGG A+P ++ + + + ++L+VE A RL E+++ R +I+ +GQ R + ++ E LP++ D DPYG I S GS N++Y S L TPD K++G+ D+ +Y Sbjct: 19 VLKKLEDLAYKILEEVKAGKNPYFDVPTRGLSNVYFDEEARLIKLGDKLSRRYFLNVAHARKFMQTLILMAYVKRLVSEGKHASLREAYYANKHTIPGTHENTFEDQSESDPIIEDLERMLGVLREEMHITADRRGYVYGDIVIKDGEDEFNASKLGMGGWAVPGTVEHIQFPEINVDYVLVVETAAMADRLIEEKYPKRERALIIATQGQASRGVRRLIHRLHYEEGLPIIVFTDGDPYGWYIYSTIKQGSINLAYLSEKLATPDAKFVGMTMDDIKEY 298
BLAST of FC878149 vs. ExPASy Swiss-Prot
Match: TOP6A_PYRHO (Type II DNA topoisomerase VI subunit A OS=Pyrococcus horikoshii GN=top6A PE=3 SV=2) HSP 1 Score: 145.976 bits (367), Expect = 2.706e-34 Identity = 82/282 (29.08%), Postives = 145/282 (51.42%), Query Frame = 1 Query: 31 VQSTIETLILQIARSILAGNGFSFQVPSRASSNQLYVPELDRIVLKDKTTLRPFASLSTVRKSTITVKILSLIHQLCLRNIHVTKRDLFY--------TDVKLFQDQTQSDAVLDDVACILGCTRSSLNVIAAEKGVVVGRLTFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMKSDAMFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALVDSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKI 852 V +E L +I +G F VP+R +N + E I L D+ + R F +++ RK T+ +++ I +L H + R+ +Y T F+DQ++SD +++D+ +LG R +++ A +G + G + D D + +K+G GG A+P ++ + + + ++L+VE A RL E+++ R C+IV +GQ R + ++ E LP++ D DPYG I S GS N++Y S L TPD K++G+ D+ +Y + Sbjct: 19 VLKKLEDLAWKILEEAKSGKNPYFDVPTRGLNNVYFDEESRLIRLGDRLSRRYFLNVAHARKFMQTLILMAYIKRLVSEGKHASLREAYYANKHTVPGTRENTFEDQSESDPIIEDLERMLGVLREEMHITADRRGYIYGDIVIKDGEDEFNASKLGTGGWAVPGTVEHIQFPEINVDYVLVVETAAMADRLIEEKYPKRENCLIVATQGQASRGVRRLIHRLHYEEGLPIIVFTDGDPYGWYIYSTIKRGSINLAYLSEKLATPDAKFVGMTMDDIKEYNL 300
BLAST of FC878149 vs. ExPASy Swiss-Prot
Match: TOP6A_PYRKO (Type II DNA topoisomerase VI subunit A OS=Pyrococcus kodakaraensis GN=top6A PE=3 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 5.643e-32 Identity = 79/271 (29.15%), Postives = 140/271 (51.66%), Query Frame = 1 Query: 61 QIARSILAGNGFSFQVPSRASSNQLYVPELDRIV-LKDKTTLRPFASLSTVRKSTITVKILSLIHQLCLRNIHVTKRDLFY--------TDVKLFQDQTQSDAVLDDVACILGCTRSSLNVIAAEKGVVVGRLTFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMKSDAMFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALVDSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKY 846 +I I AG F +P R SN +Y E R++ + DK + R F +++ RK T+ I++ + +L H + R+ +Y T F+DQ++SD +++D+ + G R +++ A +G + G + D D + +++G GG A+P ++ + + + + L+VE A RL E++F R +I+ +GQ R + ++ E LP++ D DPYG I S GS N++Y S L TP+ K++G+ D+ KY Sbjct: 32 RILEDIKAGKNPHFDIPMRGLSN-VYFDEKSRLIKMGDKLSRRYFLNVAHARKFMQTLLIMAYVKRLVSEGKHASLREAYYANKHTIPGTRENTFEDQSESDPIIEDLERMFGVLREEMHITADRRGYIYGDIVIRDGEDEFNASRLGSGGWAVPGTVEHIQFPEINVDYALVVETAAMADRLIEEKFPKRENALIIATQGQASRGVRRLIHRLHYEEGLPIIVFTDGDPYGWYIYSTIKQGSINLAYLSDKLATPESKFVGMTMDDIKKY 301
BLAST of FC878149 vs. ExPASy Swiss-Prot
Match: TOP6A_METTH (Type II DNA topoisomerase VI subunit A OS=Methanobacterium thermoautotrophicum GN=top6A PE=3 SV=1) HSP 1 Score: 133.265 bits (334), Expect = 1.815e-30 Identity = 84/255 (32.94%), Postives = 127/255 (49.80%), Query Frame = 1 Query: 103 QVPSRASSNQLYVPELDRIVLKDKTTLRPFASLSTVRKSTITVKILSLIHQLCLRNIHVTKRDLFYTDVKL---FQDQTQSDAVLDDVACILGCTRSSLNVIAAEKGV-VVGRLTFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMKSDAMFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALVDSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIP 855 +VPSR +SN +Y + VL D+ R ++ ++K + + L R T R+L+Y F DQ +S+ V +D+ LG TR L ++ E G V G LT + ID + G G I P ID V + D ++ VE + RL +++ Y +F +IV KGQ ATR F++++ EL LPV D DP+G I V GS +++ + L TPD K+LG+ SD+ Y +P Sbjct: 31 KVPSRGTSNIIYDEDKRHYVLGDRYGTRSMGNVKQIKKIGQMLYTANFCKDLVAREKTATLRELYYISEGWEVDFADQQESNIVGEDLEVTLGMTREELGLMPEEDGASVYGALTVREGDIEIDALRSGKSGYNISPTIDEVEFVDHDVERVIAVETMGMFHRLVQEKAYKKFDALIVGLKGQAARATRRFIKRVNEELNLPVYICNDGDPWGFHIAMVIISGSAKLAHVNHQLATPDAKFLGVTASDIINYDLP 285
BLAST of FC878149 vs. ExPASy Swiss-Prot
Match: TOP6A_METJA (Type II DNA topoisomerase VI subunit A OS=Methanocaldococcus jannaschii GN=top6A PE=1 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 1.438e-27 Identity = 92/289 (31.83%), Postives = 143/289 (49.48%), Query Frame = 1 Query: 28 AVQSTIETLILQIARSILAGNGFSFQVPSRASSNQLYVPELDRIVLKDKTTLRPFASLSTVRKSTI---TVKILSLIHQLCLRNIHVTKRDLFYTDVKL----FQDQTQSDAVLDDVACILGCTRSSLNVIAAEKGV-VVGRLTFSDN---GDMI-DCTKMGMGGKAIPPNIDRVGDMKSDAMFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALVDSDPYG-LKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIP 855 A Q IE L ++ ++ G +P R+ SN ++ E L K R TV ++ I T K+L QL + T R+ +Y F DQ S+ V++D+ LG R L I E G VVG L + G+++ DCTK+G G IP ++ ++ ++++DA FIL +E + RL +RF+++ CI+V+ KG P ATR F++++ E LPVL D DPYG L I GS + + L+ P + +G+ P D+ Y +P Sbjct: 15 AKQKIIE-LAKKMYEDLMKGKRPKITMPIRSLSNAMFDKEKGSFTLVGKEKARTL----TVNQAKIFAQTTKMLEFAKQLLETDDFSTLREAYYVSKNWGEARFDDQQASNNVIEDLEAALGVLREHLGFIPEEDGSSVVGPLKIIEETPEGELVVDCTKLGTGAYNIPNDVTKL-NLETDADFILAIETSGMFARLNAERFWDKHNCILVSLKGVPARATRRFIKRLHEEHDLPVLVFTDGDPYGYLNIYRTLKVGSGKAIHLADKLSIPAARLIGVTPQDIIDYDLP 297
BLAST of FC878149 vs. ExPASy Swiss-Prot
Match: TOP6A_HALSA (Type II DNA topoisomerase VI subunit A OS=Halobacterium salinarium GN=top6A PE=3 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 1.140e-24 Identity = 82/262 (31.30%), Postives = 126/262 (48.09%), Query Frame = 1 Query: 106 VPSRASSNQLYVPELDRIVLKDKTTLRPFASLSTVRKSTITVKILSLIHQLCLRNIHVTKRDLFYTDVKL------FQDQTQSDAVLDDVACILGCTRSSLNVIAAEKGV-VVGRLTFSDN---GDM-IDCTK-MGMGGKAIPPNIDRVGDMKSDAMFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALVDSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIP 855 +P+R+ SN Y + D V D + R S+ RK +V + + Q T R+L+Y F DQ++SD +++D+ + G R ++ E G V+G L + GD I C + +G GG IP N D + + +DA F+L VE RL E+ F + + I+V GQP ATR +++ EL LPV D DP+ +I GS ++ S L TP +++GIRP D+ Y +P Sbjct: 37 LPTRSKSNIEYDEDADVWVYGDSQSTRSANSVRGARKLLKSVYTVDFLAQQLDEGRSSTLRELYYLSESWDEAEAQFNDQSESDKLVEDLEIVSGVKREDFHMRPEESGAKVMGPLRLREQTRRGDREIHCQEDVGQGGYQIPNNPDTIDFLDTDADFVLCVETGGMRDRLVENGFDDDYNAIVVHLGGQPARATRRLTKRLHDELDLPVTVFTDGDPWSYRIYGSVAYGSIKSAHLSEYLATPQAQFIGIRPQDIVDYDLP 298
BLAST of FC878149 vs. ExPASy Swiss-Prot
Match: TOP6A_HALS3 (Type 2 DNA topoisomerase 6 subunit A OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=top6A PE=3 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 1.140e-24 Identity = 82/262 (31.30%), Postives = 126/262 (48.09%), Query Frame = 1 Query: 106 VPSRASSNQLYVPELDRIVLKDKTTLRPFASLSTVRKSTITVKILSLIHQLCLRNIHVTKRDLFYTDVKL------FQDQTQSDAVLDDVACILGCTRSSLNVIAAEKGV-VVGRLTFSDN---GDM-IDCTK-MGMGGKAIPPNIDRVGDMKSDAMFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALVDSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIP 855 +P+R+ SN Y + D V D + R S+ RK +V + + Q T R+L+Y F DQ++SD +++D+ + G R ++ E G V+G L + GD I C + +G GG IP N D + + +DA F+L VE RL E+ F + + I+V GQP ATR +++ EL LPV D DP+ +I GS ++ S L TP +++GIRP D+ Y +P Sbjct: 37 LPTRSKSNIEYDEDADVWVYGDSQSTRSANSVRGARKLLKSVYTVDFLAQQLDEGRSSTLRELYYLSESWDEAEAQFNDQSESDKLVEDLEIVSGVKREDFHMRPEESGAKVMGPLRLREQTRRGDREIHCQEDVGQGGYQIPNNPDTIDFLDTDADFVLCVETGGMRDRLVENGFDDDYNAIVVHLGGQPARATRRLTKRLHDELDLPVTVFTDGDPWSYRIYGSVAYGSIKSAHLSEYLATPQAQFIGIRPQDIVDYDLP 298
BLAST of FC878149 vs. ExPASy Swiss-Prot
Match: TOP6A_ARCFU (Type II DNA topoisomerase VI subunit A OS=Archaeoglobus fulgidus GN=top6A PE=3 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 1.944e-24 Identity = 76/278 (27.34%), Postives = 133/278 (47.84%), Query Frame = 1 Query: 52 LILQIARSILAGNGFSFQVPSRASSNQLYVPELDRIVLKDKTTLRPFASLSTVRKSTITVKILSLIHQLCLRNIHVTKRDLFYTD----VKLFQDQTQSDAVLDDVACILGCTRSSLNVIAAEKGV-VVGRLTFSDNGDM----IDCTK-MGMGGKAIPPNIDRVGDMKSDAMFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALVDSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIP 855 ++ I + AG + +R N + E + V D+ ++R ++ + ++ + + N T R+L+Y F++Q +SD +++D+ + R ++ E G V+G L + I C +G GG IP N+D++ + DA F++ +E RL E+ F ++ IIV KGQP +TR LR++ EL LPV+ D DP+ +I + GS ++ S L TP +++GIRP+D+ KY +P Sbjct: 15 IVQNIYDQMKAGQVPELHIATRTKYNIEFNEESEVWVYGDRKSVRSAKTVKGAYRILKMTYVIGFLKEQLNLNKSSTLRELYYISEGWGAAKFEEQPESDRLVEDLEILTNFQREHFHIRPEEDGATVIGPLRVREETRRGVREIHCQDDVGEGGYQIPVNVDKIEFVDHDAKFVIAIETGGMRDRLVENGFDEKYDAIIVHLKGQPARSTRRLLRRLNTELNLPVVVFTDGDPWSYRIFASVAYGSIKSAHLSEYLATPAAQFVGIRPTDIVKYDLP 292
BLAST of FC878149 vs. ExPASy Swiss-Prot
Match: TOP6A_METMA (Type II DNA topoisomerase VI subunit A OS=Methanosarcina mazei GN=top6A PE=1 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 3.316e-24 Identity = 80/266 (30.08%), Postives = 133/266 (50.00%), Query Frame = 1 Query: 97 SFQVPSRASSNQLYVPELDRIVLKDKTTLRPFASLSTVRKSTITVKILS----LIHQLCLRNIHVTKRDLFYT----DVKLFQDQTQSDAVLDDVACILGCTRSSLNVIAAEKGVVV-GRLTFSDNGDM----IDCTK-MGMGGKAIPPNIDRVGDMKSDAMFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALVDSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKI 852 S +PSR +N Y E D V D+ + R S TV+ + +K LI++ RN T R+L+Y D F++Q +SD +++D+ + R ++ E G + G + ++ I C K +G GG IP N++ + K DA I+ +E Y RL E+ F + I+V KGQP +TR +++M EL +PV D DP+ +I + G+ ++ S + TP K+LG++PSD+ +Y++ Sbjct: 38 SVSLPSRTKANLEYSDESDVWVYGDRESER---SAKTVKGAFQLLKTTYATDFLINEHLARNRGSTLRELYYISEGWDYAKFKEQGESDRLIEDLEILTSLQREYFHMRPEEDGATMFGPIEITEQTKRGERNIHCQKDVGEGGYQIPFNVENIEFQKHDASMIIAIETGGMYARLMENGFDEAYNAILVHLKGQPARSTRRIIKRMNEELGIPVAVFTDGDPWSYRIYASVAYGAIKSAHLSEFMATPAAKFLGLQPSDIVEYEL 300
BLAST of FC878149 vs. ExPASy Swiss-Prot
Match: TOP6A_NATPD (Type 2 DNA topoisomerase 6 subunit A OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=top6A PE=3 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 5.656e-24 Identity = 77/265 (29.06%), Postives = 132/265 (49.81%), Query Frame = 1 Query: 97 SFQVPSRASSNQLYVPELDRIVLKDKTTLRPFASLSTVRKSTITVKILSLIHQLCLRNIHVTKRDLFYTDVKL------FQDQTQSDAVLDDVACILGCTRSSLNVIAAEKGV-VVGRLTFSDN---GDM-IDCTK-MGMGGKAIPPNIDRVGDMKSDAMFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALVDSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIP 855 + ++P+R SN ++ + D V D+T+ R S+ +K + + + + T R+L+Y F DQ +S+ +++D+ + TR ++ E G ++G L + G+ I C K +G GG IP N D + + +DA F+L VE RL E+ F IIV KGQP ATR +++ +L LPV+ D DP+ +I + GS ++ S L TP+ +++GI+P+D+ +Y +P Sbjct: 36 TMEIPTRTKSNIVFDEDKDVWVYGDRTSTRSANSVRGAQKLLKAIYTIEFLADQLEQGRSSTLRELYYLSESWDEERAQFNDQDESNQLVEDLEIVSKVTREDFHMRPEESGATIMGPLYLREQTRRGEREIHCQKDVGEGGYQIPNNPDTIEFLDNDADFVLCVETGGMRDRLVENGFDEEHNVIIVHLKGQPARATRRITKRLHDDLDLPVVVFCDGDPWSYRIYASVAYGSIKSAHLSEYLATPEAEYIGIQPADIVEYDLP 300 The following BLAST results are available for this feature:
BLAST of FC878149 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 28
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC878149 ID=FC878149; Name=FC878149; organism=Citrus clementina; type=EST; length=877bpback to top |