FC878149

Overview
NameFC878149
Unique NameFC878149
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length877
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878149 vs. ExPASy Swiss-Prot
Match: TOP6A_HALMA (Type II DNA topoisomerase VI subunit A OS=Haloarcula marismortui GN=top6A PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.387e-24
Identity = 76/262 (29.01%), Postives = 128/262 (48.85%), Query Frame = 1
Query:  106 VPSRASSNQLYVPELDRIVLKDKTTLRPFASLSTVRKSTITVKILSLIHQLCLRNIHVTKRDLFYT------DVKLFQDQTQSDAVLDDVACILGCTRSSLNVIAAEKGV-VVGRLTF---SDNGDM-IDCTK-MGMGGKAIPPNIDRVGDMKSDAMFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALVDSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIP 855
            +P+R  SN ++  +    V  D+ + R   ++S   K    V  +  + Q    +   T R+L+Y       D   F  Q +S+ +++D+  +    R   ++   E G  V+G L     ++ GD  I C   +G GG  IP N D +  + +DA F+L VE      RL E+ F + +  ++V   GQP  ATR  ++++  EL LPV    D DP+  +I      GS   ++ S  L TP+ +++GIRP D+ +Y++P
Sbjct:   39 IPTRTKSNIVFDEDEQVWVYGDRNSTRSAKTISGAEKILKAVYTIDFLSQQLEEDRSSTLRELYYLSESWDLDEAQFNTQDESNNLIEDLEIVSDVKREDFHMRPEESGAKVMGPLLLREQTNRGDREIHCQDDVGQGGYQIPNNPDTIEFLDNDAKFVLCVETGGMRDRLVENGFDDEYDALVVHLGGQPARATRRLIKRLHDELDLPVTVFTDGDPWSYRIFGSVSYGSIKSAHLSEYLATPEAQFIGIRPEDIVEYELP 300          
BLAST of FC878149 vs. ExPASy Swiss-Prot
Match: SPO11_CAEEL (Meiotic recombination protein spo-11 OS=Caenorhabditis elegans GN=spo-11 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.260e-23
Identity = 68/245 (27.76%), Postives = 128/245 (52.24%), Query Frame = 1
Query:  157 IVLKDKTTLRPFASLSTVRKSTITVKILSLIHQ---LCLRNIHVTKRDLFYTDVKLFQDQTQSDAVLDDVACILGCTRSSLNVIAAEKGVVVGRLTFS-DNGDMIDCTKMGMGGKAIPPNIDRVGDMKSDAMFILLVEKDAAYIRLAEDRFYNRFPC-IIVTAKGQPDVATRLFLRKMKMELKLPVLALVDSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPM 876
            + L+  T+   F    T ++     + L  +HQ   L   +   TKR+L+Y    ++ +Q   D+ +  +  +L  +R++LN+++  +G++ G +TF  +N  +ID        + +  +     ++ S+A FIL+VEKD  + +L ++ F   FP  I+ T+KG PD+ATR  L+ +  + K P+  L D+DP+G++I   Y  G      +      P I+W+G+ P+D  ++ I +   LP+
Sbjct:   69 LTLRISTSKSHFCLRYTAKRKGKLDRDLHCLHQVYDLLENDKRSTKRELYYEHKAVYGNQKYLDSSIKSICELLNESRANLNILSCGRGIIRGAITFLVENVGVIDARVQ----EVLITDALLFSNIISEADFILVVEKDTTFQKLMDENFQAMFPRGILATSKGYPDIATRNVLKMLSEKRKFPIYGLFDADPHGIEIYLTYKYGPTKEFAEGRGAFVPTIEWIGLFPTDFHRFTIDQSQCLPL 309          
BLAST of FC878149 vs. ExPASy Swiss-Prot
Match: REC12_SCHPO (Meiotic recombination protein rec12 OS=Schizosaccharomyces pombe GN=rec12 PE=1 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.646e-23
Identity = 67/185 (36.22%), Postives = 107/185 (57.84%), Query Frame = 1
Query:  232 KILSLIHQLCLRNIHVTKRDLFYTDVKLFQDQTQSDAVLDDVACILGCTRSSLNVIAAEKGVVVGRLTFS-DNGDMIDCTKMGMGGKAIPPNIDRVGDMKSDAMFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMEL-KLPVLALVDSDPYGLKILSVYGCGSKNMSYD 780
            ++L  +H+  + +  +TKRD++Y DV LF+ QT  D +L D++  +GC+RS LNV A+ KG+V G +  + +NG +I  T      K +  +  R+  + S A ++L++EK+A +  L E+   +    IIVTAKG PD+ TR FL K+   L       + D DP+GL I S +  GS   S++
Sbjct:   76 RVLDCVHEAVISDTVITKRDIYYRDVDLFKRQTVVDELLGDISNTIGCSRSDLNVEASAKGLVFGSIHIALENGTVITAT------KPLLISHHRISSITSTAKWVLVIEKEAVFQTLTEEALAD---TIIVTAKGFPDLMTRKFLVKLAKALPDAKFFGIFDWDPHGLCIYSCFKYGSNAYSHE 251          
BLAST of FC878149 vs. ExPASy Swiss-Prot
Match: TOP6A_METAC (Type II DNA topoisomerase VI subunit A OS=Methanosarcina acetivorans GN=top6A PE=3 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 2.149e-23
Identity = 78/266 (29.32%), Postives = 132/266 (49.62%), Query Frame = 1
Query:   97 SFQVPSRASSNQLYVPELDRIVLKDKTTLRPFASLSTVRKSTITVKILS----LIHQLCLRNIHVTKRDLFYT----DVKLFQDQTQSDAVLDDVACILGCTRSSLNVIAAEKGVVV-GRLTFSD----NGDMIDCTK-MGMGGKAIPPNIDRVGDMKSDAMFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALVDSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKI 852
            S  +PSR  +N  Y  E D  V  D+ + R   S  TV+ +   +K       LI++    N   T R+L+Y     D   F++Q +SD +++D+  +    R   ++   E G  + G +  S+        I C K +G GG  IP N++ +     DA  I+ +E    Y RL E+ F   +  I+V  KGQP  +TR  +++M  EL++PV    D DP+  +I +    G+   ++ S  + TP  ++LG++PSD+ +Y++
Sbjct:   42 SVSLPSRTKANIEYSDESDVWVYGDRESER---SAKTVKGAFQLLKTTYATDFLINEHLAHNRGSTLRELYYISEGWDYAKFKEQAESDRLIEDLELLTSLQREYFHMRPEEDGATMFGPIEISELTKRGARNIHCQKDVGEGGYQIPFNVENIEFKNHDASMIIAIETGGMYARLMENGFDEAYNAILVHLKGQPARSTRRIIKRMNEELEIPVAVFTDGDPWSYRIYASVAYGAIKSAHLSEFMATPAARFLGLQPSDIVEYEL 304          
BLAST of FC878149 vs. ExPASy Swiss-Prot
Match: TOP6A_METBF (Type 2 DNA topoisomerase 6 subunit A OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=top6A PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.053e-22
Identity = 77/268 (28.73%), Postives = 133/268 (49.63%), Query Frame = 1
Query:   97 SFQVPSRASSNQLYVPELDRIVLKDKTTLRPFASLSTVR------KSTITVKILSLIHQLCLRNIHVTKRDLFYT----DVKLFQDQTQSDAVLDDVACILGCTRSSLNVIAAEKGVVV-GRLTFSDNGDM----IDCTK-MGMGGKAIPPNIDRVGDMKSDAMFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALVDSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKI 852
            S  +PSR  SN  Y  E D  V   + + R   S  TV+      K+T   + L  I++   ++   T R+L+Y     +   F++Q +SD +++D+  +    R   ++   E G  + G +  ++  +     I C K +G GG  IP N++ +     DA  I+ +E    Y RL E+ F   +  I+V  KGQP  +TR  +++M  EL +PV    D DP+  +I +    G+   ++ S  + TP  K+LG++PSD+ +Y++
Sbjct:   38 SISLPSRTKSNLEYSNESDVWVYGGRESER---SAKTVKGAFQLLKTTYATEFL--INEHLAQSRGSTLRELYYISEGWEAAKFKEQAESDRLIEDLELLTNLQREYFHMRPEEDGATMFGPIEITEQTNRGERNIHCQKDVGEGGYQIPFNVENIEFKAHDASMIIAIETGGMYARLMENGFDEAYNAILVHLKGQPARSTRRIIKRMNEELGIPVAVFTDGDPWSYRIYASVAYGAIKSAHLSEFMATPAAKFLGLQPSDIVEYEL 300          
BLAST of FC878149 vs. ExPASy Swiss-Prot
Match: SPO11_NOSCE (Probable meiosis-specific protein SPO11 homolog OS=Nosema ceranae (strain BRL01) GN=SPO11 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.966e-12
Identity = 52/204 (25.49%), Postives = 92/204 (45.10%), Query Frame = 1
Query:  229 VKILSLIHQLCLRNIHVTKRDLFYTDVKLFQDQTQSDAVLDDVACILGCTRSSLNVIAAEKGVVVGRLTFSDNGDMIDCTKMGMGGKAIPPNIDRVGDMKSDAMFILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALVDSDPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLD 840
            +K    IH     N    KR+++Y  V +F+ Q+  D ++ D    L CT+S L +    KGV  G +TF  N  ++    + + G ++ P+++++  ++      L++EKD  + +   +   N    + +  KG P   T L + K    L +    + D DPYGL+I + Y                P IK +GI   D++
Sbjct:   30 LKFYEQIHLGLTLNKIKNKREIYYNSVSIFKKQSIVDMLIKDTCNKLKCTQSDLLISTTLKGVFYGNITFYKNNKLV---HVNLKGTSLIPDMNQIDRIEYTQKKCLIIEKDTIFSKTVREYISN--DILFICGKGYPCRNTLLLVNK----LNIRKYGIFDFDPYGLEICTKY----------------PSIKKIGIDIKDIN 208          
BLAST of FC878149 vs. ExPASy Swiss-Prot
Match: SPO11_YEAST (Meiosis-specific protein SPO11 OS=Saccharomyces cerevisiae GN=SPO11 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.465e-11
Identity = 54/205 (26.34%), Postives = 96/205 (46.83%), Query Frame = 1
Query:  208 VRKSTITVKILSLIHQLCLRNIHVTKRDLFYTDVKLFQDQTQSDAVLDDVACILGCT-RSSLNVIAAEKGVVVGRLTFSDNGDMIDCTKMGMGGKA--IPPNIDRVGDMKSDAMF---------ILLVEKDAAYIRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKM---ELKLPVLALVDSDPYGLKILSVYGCGSKNMSY 777
            +++  I + +L ++ +      + T RD+FY++V+LFQ Q      LD +      + R SLN+I A+KG+V          +++ C       K    P     +   + DA+          I++VEK+A + +L  +        +++T KG PD  TRLFL+K++    +L        D+DPYG+ I   Y   ++  +Y
Sbjct:  105 LKRCAILLNLLKVVMEKLPLGKNTTVRDIFYSNVELFQRQANVVQWLDVIRFNFKLSPRKSLNIIPAQKGLVYSPFPIDIYDNILTCENEPKMQKQTIFPGKPCLIPFFQDDAVIKLGTTSMCNIVIVEKEAVFTKLVNNYHKLSTNTMLITGKGFPDFLTRLFLKKLEQYCSKLISDCSIFTDADPYGISIALNYTHSNERNAY 309          
BLAST of FC878149 vs. ExPASy Swiss-Prot
Match: SPO11_ENCCU (Probable meiosis-specific protein SPO11 homolog OS=Encephalitozoon cuniculi GN=SPO11 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.219e-11
Identity = 56/200 (28.00%), Postives = 96/200 (48.00%), Query Frame = 1
Query:  229 VKILSLIHQLCLRNIHVTKRDLFYTDVKLFQDQTQSDAVLDDVACILGCTRSSLNVIAAEKGVVVGRLTFSDNG--DMIDCTKMGMGGKAIPPNIDRVGDMKSDAMFILLVEKDAAYIRLAEDRFYNRFPC----IIVTAKGQPDVATRLFLRKMKMELKLPVLALVDSDPYGLKILSVYGCGSKNMSYDSANLTTPDIK 810
            +++  +I ++    I   +R++FY DV +F+ Q+    ++  +A  L  ++  L V    KG+ +GRL F  +    M++ +  G G   + P++  + ++  D    ++VEKD    R+A +    R  C    + V  KG P   T L L+   +E K  V  L D DP+G+ I  +Y  GSK          TPDI+
Sbjct:   34 LRLYEIIIEMQELGITRNEREIFYMDVNVFRTQSVVRRLVSSIASELQISKHDLGVRNTLKGIFIGRLGFVRHHGLGMVEMSSKG-GCPQLIPDMSDIAEVLCDYKKTVVVEKDTVLQRIASE--IEREKCLEEILFVCGKGYPCKNTVLLLK--MIEHKTAVAGLFDLDPFGIHIFCIYKYGSKE---------TPDIR 219          
The following BLAST results are available for this feature:
BLAST of FC878149 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
TOP6A_HALMA7.387e-2429.01Type II DNA topoisomerase VI subunit A OS=Haloarcu... [more]
SPO11_CAEEL1.260e-2327.76Meiotic recombination protein spo-11 OS=Caenorhabd... [more]
REC12_SCHPO1.646e-2336.22Meiotic recombination protein rec12 OS=Schizosacch... [more]
TOP6A_METAC2.149e-2329.32Type II DNA topoisomerase VI subunit A OS=Methanos... [more]
TOP6A_METBF4.053e-2228.73Type 2 DNA topoisomerase 6 subunit A OS=Methanosar... [more]
SPO11_NOSCE4.966e-1225.49Probable meiosis-specific protein SPO11 homolog OS... [more]
SPO11_YEAST2.465e-1126.34Meiosis-specific protein SPO11 OS=Saccharomyces ce... [more]
SPO11_ENCCU3.219e-1128.00Probable meiosis-specific protein SPO11 homolog OS... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA76CA10RM1 IVIA1 Citrus clementina cDNA clone IC0AAA76CA10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878149 ID=FC878149; Name=FC878149; organism=Citrus clementina; type=EST; length=877bp
CGCGAATTCACCGACCTTTCACTCTCCGCCGTCCAATCAACCATCGAAAC
CCTAATCCTCCAAATAGCCCGCTCCATACTCGCCGGCAACGGCTTCAGTT
TCCAAGTCCCCTCACGCGCCTCCTCCAACCAACTCTACGTCCCCGAACTC
GACCGCATCGTGCTAAAAGACAAAACTACCCTCCGCCCTTTCGCGAGCCT
GTCGACCGTACGCAAATCCACCATCACCGTCAAAATCCTCTCGCTCATCC
ACCAGCTCTGCTTGAGAAACATCCACGTCACCAAACGAGACCTGTTCTAC
ACTGACGTCAAACTCTTCCAAGACCAGACCCAATCCGACGCCGTTTTGGA
CGACGTCGCTTGCATTCTAGGCTGCACGCGGTCCAGCCTCAACGTGATCG
CCGCCGAAAAGGGTGTCGTCGTCGGAAGACTGACTTTCAGCGACAATGGC
GACATGATTGATTGCACTAAAATGGGTATGGGCGGGAAAGCGATTCCGCC
AAATATTGATCGAGTTGGTGACATGAAAAGCGATGCCATGTTCATACTTT
TGGTTGAAAAGGATGCCGCTTACATTAGATTAGCTGAAGATAGATTTTAC
AATCGATTTCCTTGTATAATTGTGACGGCGAAAGGCCAGCCTGATGTAGC
TACTAGGTTGTTTTTGAGGAAGATGAAGATGGAGTTGAAGTTACCAGTTT
TGGCCTTAGTTGATAGTGATCCTTATGGATTGAAAATTTTGTCAGTGTAT
GGATGTGGGTCGAAGAATATGTCTTATGACAGTGCTAATTTGACCACACC
GGATATTAAGTGGTTGGGGATCAGGCCGAGTGATTTGGATAAGTATAAAA
TACCGGAGCAGTGTAGGTTGCCAATGA
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