FC878159
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC878159 vs. ExPASy Swiss-Prot
Match: CRTE_CYAPA (Geranylgeranyl pyrophosphate synthetase homolog OS=Cyanophora paradoxa GN=crtE PE=3 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 6.909e-32 Identity = 61/105 (58.10%), Postives = 80/105 (76.19%), Query Frame = 3 Query: 489 FDFKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGE 803 F+ +Y+ ++ V L+ ++ +P I++S+RYSL AGGKR+RP+LCLA+C+L GG MA+P AC++EMIHTMSLIHDDLP MDND RRGKPTNH IYGE Sbjct: 8 FNLLTYLYERKEIVEDTLNKSIPRGNPTFIYDSIRYSLSAGGKRIRPILCLASCELAGGTMEMALPTACALEMIHTMSLIHDDLPAMDNDSYRRGKPTNHIIYGE 112
BLAST of FC878159 vs. ExPASy Swiss-Prot
Match: ISPA_BACST (Geranyltranstransferase OS=Bacillus stearothermophilus PE=1 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 1.181e-23 Identity = 53/95 (55.79%), Postives = 70/95 (73.68%), Query Frame = 3 Query: 534 QALDAAVS-----LKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGE 803 QA++ A+S L+ P K+ ++M YSL AGGKR+RP+L L+ +G ++ +P AC+IEMIHT SLIHDDLP MDND LRRGKPTNH ++GE Sbjct: 15 QAVETALSRYIERLEGPAKLKKAMAYSLEAGGKRIRPLLLLSTVRALGKDPAVGLPVACAIEMIHTYSLIHDDLPSMDNDDLRRGKPTNHKVFGE 109
BLAST of FC878159 vs. ExPASy Swiss-Prot
Match: ISPA_BACSU (Geranyltranstransferase OS=Bacillus subtilis GN=ispA PE=3 SV=2) HSP 1 Score: 108.227 bits (269), Expect = 5.863e-23 Identity = 51/102 (50.00%), Postives = 67/102 (65.69%), Query Frame = 3 Query: 501 SYMIQKASTVNQALDAAVSLKD-PVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGE 803 S++ + T+ L D P + +SM YSL AGGKR+RP++ LA + G E +P C++EMIHT SLIHDDLPCMD+D LRRGKPTNH ++GE Sbjct: 7 SFLADRKKTIENQLSVYTEKLDMPDSLKKSMLYSLQAGGKRLRPLIVLAVLNAYGKSEKDGIPVGCAVEMIHTYSLIHDDLPCMDDDDLRRGKPTNHKVFGE 108
BLAST of FC878159 vs. ExPASy Swiss-Prot
Match: ISPA_MICLU (Geranyltranstransferase OS=Micrococcus luteus GN=fps PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 1.144e-18 Identity = 43/77 (55.84%), Postives = 55/77 (71.43%), Query Frame = 3 Query: 573 KIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGE 803 ++HE++ YSL AGGKR+RP+L L D +GG+ +P ++EMIHT SLIHDDLP MDND RRGK TNH + E Sbjct: 30 RLHEAINYSLSAGGKRIRPLLVLTTLDSLGGNAHDGLPFGIALEMIHTYSLIHDDLPAMDNDDYRRGKLTNHKRFDE 106
BLAST of FC878159 vs. ExPASy Swiss-Prot
Match: ISPA_AQUAE (Geranyltranstransferase OS=Aquifex aeolicus GN=ispA PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.827e-16 Identity = 41/92 (44.57%), Postives = 58/92 (63.04%), Query Frame = 3 Query: 528 VNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGE 803 + + L+ + + P ++ E+M+Y L GKR+RP+ +A +GG+E A+ IE+IH SLIHDDLPCMDND RRG PT H +GE Sbjct: 11 IEKRLNEILKPEGPEELIEAMKYYPLQKGKRIRPLFTVAVASALGGNEDDAITVGSGIELIHNYSLIHDDLPCMDNDVWRRGLPTCHIKFGE 102
BLAST of FC878159 vs. ExPASy Swiss-Prot
Match: ISPA_HAEIN (Geranyltranstransferase OS=Haemophilus influenzae GN=ispA PE=3 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 1.309e-14 Identity = 46/108 (42.59%), Postives = 63/108 (58.33%), Query Frame = 3 Query: 495 FKSYMIQKASTVNQALDAAVSLKDPVKIH-----ESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGE 803 F + Q + +N+ L+A + ++ H E+M+Y+LL GGKRVRP L A ++G + AA +IE IH SLIHDDLP MD+D LRRG PT H + E Sbjct: 4 FSEELQQVQTRINRFLEAQF---EGIESHNAPLLEAMKYALLLGGKRVRPFLVYATGQMLGAEKQTLDYAAAAIEAIHAYSLIHDDLPAMDDDNLRRGHPTCHIQFDE 108
BLAST of FC878159 vs. ExPASy Swiss-Prot
Match: ISPA_BRAJA (Probable geranyltranstransferase OS=Bradyrhizobium japonicum GN=fppS PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 2.233e-14 Identity = 44/102 (43.14%), Postives = 59/102 (57.84%), Query Frame = 3 Query: 504 YMIQKASTVNQALDAAVSLKDP--VKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGE 803 +M A V +AL + +D ++ +MRY+ L GGKR R +LCLAA L M +IEM+H +L+HDDLP MD+D LRRG PT H +GE Sbjct: 36 WMQDGAKRVEEALARLLCAEDDGETELMAAMRYATLHGGKRTRALLCLAAGALADTPAHMLDDVGAAIEMMHACTLVHDDLPAMDDDVLRRGLPTVHVKFGE 137
BLAST of FC878159 vs. ExPASy Swiss-Prot
Match: ISPA_RHISN (Probable geranyltranstransferase OS=Rhizobium sp. (strain NGR234) GN=NGR_a02750 PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 2.916e-14 Identity = 44/102 (43.14%), Postives = 59/102 (57.84%), Query Frame = 3 Query: 504 YMIQKASTVNQALDAAVSLKD--PVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGE 803 +M A V QAL + +D ++ +MRY+ L GGKR R +LCLAA L + +IEM+H +L+HDDLP MD+D LRRG PT H +GE Sbjct: 36 WMQNGAKRVEQALARLLCAEDHGETELMAAMRYATLHGGKRTRALLCLAAGALADTPAHILDDVGAAIEMMHACTLVHDDLPAMDDDVLRRGLPTVHVKFGE 137
BLAST of FC878159 vs. ExPASy Swiss-Prot
Match: IDSA_METTM (Bifunctional short chain isoprenyl diphosphate synthase OS=Methanobacterium thermoautotrophicum (strain Marburg / DSM 2133) GN=idsA PE=1 SV=3) HSP 1 Score: 78.5666 bits (192), Expect = 4.974e-14 Identity = 37/79 (46.84%), Postives = 55/79 (69.62%), Query Frame = 3 Query: 567 PVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGE 803 P + ++ + + AGGK++RP L L +C+ VGG+ A A +IE+IHT SLIHDD+ MD+D +RRG+P+ H I+GE Sbjct: 28 PDTLLKASEHLITAGGKKIRPSLALLSCEAVGGNPEDAAGVAAAIELIHTFSLIHDDI--MDDDEMRRGEPSVHVIWGE 104
BLAST of FC878159 vs. ExPASy Swiss-Prot
Match: GGPS_SULAC (Geranylgeranyl pyrophosphate synthetase OS=Sulfolobus acidocaldarius GN=gds PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.890e-13 Identity = 39/102 (38.24%), Postives = 62/102 (60.78%), Query Frame = 3 Query: 495 FKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYG 800 F +Y + ++VN + + +S D K++E+ + +GGKR+RP++ + DL GG A A +IE++HT +L+HDD+ MD D +RRG PT H YG Sbjct: 4 FDNYFNEIVNSVNDIIKSYIS-GDVPKLYEASYHLFTSGGKRLRPLILTISSDLFGGQRERAYYAGAAIEVLHTFTLVHDDI--MDQDNIRRGLPTVHVKYG 102 The following BLAST results are available for this feature:
BLAST of FC878159 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 29
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Sequences
The
following sequences are available for this feature:
EST sequence >FC878159 ID=FC878159; Name=FC878159; organism=Citrus clementina; type=EST; length=847bpback to top |