FC878159

Overview
NameFC878159
Unique NameFC878159
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length847
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878159 vs. ExPASy Swiss-Prot
Match: CRTE_CYAPA (Geranylgeranyl pyrophosphate synthetase homolog OS=Cyanophora paradoxa GN=crtE PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 6.909e-32
Identity = 61/105 (58.10%), Postives = 80/105 (76.19%), Query Frame = 3
Query:  489 FDFKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGE 803
            F+  +Y+ ++   V   L+ ++   +P  I++S+RYSL AGGKR+RP+LCLA+C+L GG   MA+P AC++EMIHTMSLIHDDLP MDND  RRGKPTNH IYGE
Sbjct:    8 FNLLTYLYERKEIVEDTLNKSIPRGNPTFIYDSIRYSLSAGGKRIRPILCLASCELAGGTMEMALPTACALEMIHTMSLIHDDLPAMDNDSYRRGKPTNHIIYGE 112          
BLAST of FC878159 vs. ExPASy Swiss-Prot
Match: ISPA_BACST (Geranyltranstransferase OS=Bacillus stearothermophilus PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.181e-23
Identity = 53/95 (55.79%), Postives = 70/95 (73.68%), Query Frame = 3
Query:  534 QALDAAVS-----LKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGE 803
            QA++ A+S     L+ P K+ ++M YSL AGGKR+RP+L L+    +G   ++ +P AC+IEMIHT SLIHDDLP MDND LRRGKPTNH ++GE
Sbjct:   15 QAVETALSRYIERLEGPAKLKKAMAYSLEAGGKRIRPLLLLSTVRALGKDPAVGLPVACAIEMIHTYSLIHDDLPSMDNDDLRRGKPTNHKVFGE 109          
BLAST of FC878159 vs. ExPASy Swiss-Prot
Match: ISPA_BACSU (Geranyltranstransferase OS=Bacillus subtilis GN=ispA PE=3 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 5.863e-23
Identity = 51/102 (50.00%), Postives = 67/102 (65.69%), Query Frame = 3
Query:  501 SYMIQKASTVNQALDAAVSLKD-PVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGE 803
            S++  +  T+   L       D P  + +SM YSL AGGKR+RP++ LA  +  G  E   +P  C++EMIHT SLIHDDLPCMD+D LRRGKPTNH ++GE
Sbjct:    7 SFLADRKKTIENQLSVYTEKLDMPDSLKKSMLYSLQAGGKRLRPLIVLAVLNAYGKSEKDGIPVGCAVEMIHTYSLIHDDLPCMDDDDLRRGKPTNHKVFGE 108          
BLAST of FC878159 vs. ExPASy Swiss-Prot
Match: ISPA_MICLU (Geranyltranstransferase OS=Micrococcus luteus GN=fps PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.144e-18
Identity = 43/77 (55.84%), Postives = 55/77 (71.43%), Query Frame = 3
Query:  573 KIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGE 803
            ++HE++ YSL AGGKR+RP+L L   D +GG+    +P   ++EMIHT SLIHDDLP MDND  RRGK TNH  + E
Sbjct:   30 RLHEAINYSLSAGGKRIRPLLVLTTLDSLGGNAHDGLPFGIALEMIHTYSLIHDDLPAMDNDDYRRGKLTNHKRFDE 106          
BLAST of FC878159 vs. ExPASy Swiss-Prot
Match: ISPA_AQUAE (Geranyltranstransferase OS=Aquifex aeolicus GN=ispA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.827e-16
Identity = 41/92 (44.57%), Postives = 58/92 (63.04%), Query Frame = 3
Query:  528 VNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGE 803
            + + L+  +  + P ++ E+M+Y  L  GKR+RP+  +A    +GG+E  A+     IE+IH  SLIHDDLPCMDND  RRG PT H  +GE
Sbjct:   11 IEKRLNEILKPEGPEELIEAMKYYPLQKGKRIRPLFTVAVASALGGNEDDAITVGSGIELIHNYSLIHDDLPCMDNDVWRRGLPTCHIKFGE 102          
BLAST of FC878159 vs. ExPASy Swiss-Prot
Match: ISPA_HAEIN (Geranyltranstransferase OS=Haemophilus influenzae GN=ispA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.309e-14
Identity = 46/108 (42.59%), Postives = 63/108 (58.33%), Query Frame = 3
Query:  495 FKSYMIQKASTVNQALDAAVSLKDPVKIH-----ESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGE 803
            F   + Q  + +N+ L+A     + ++ H     E+M+Y+LL GGKRVRP L  A   ++G  +     AA +IE IH  SLIHDDLP MD+D LRRG PT H  + E
Sbjct:    4 FSEELQQVQTRINRFLEAQF---EGIESHNAPLLEAMKYALLLGGKRVRPFLVYATGQMLGAEKQTLDYAAAAIEAIHAYSLIHDDLPAMDDDNLRRGHPTCHIQFDE 108          
BLAST of FC878159 vs. ExPASy Swiss-Prot
Match: ISPA_BRAJA (Probable geranyltranstransferase OS=Bradyrhizobium japonicum GN=fppS PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.233e-14
Identity = 44/102 (43.14%), Postives = 59/102 (57.84%), Query Frame = 3
Query:  504 YMIQKASTVNQALDAAVSLKDP--VKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGE 803
            +M   A  V +AL   +  +D    ++  +MRY+ L GGKR R +LCLAA  L      M      +IEM+H  +L+HDDLP MD+D LRRG PT H  +GE
Sbjct:   36 WMQDGAKRVEEALARLLCAEDDGETELMAAMRYATLHGGKRTRALLCLAAGALADTPAHMLDDVGAAIEMMHACTLVHDDLPAMDDDVLRRGLPTVHVKFGE 137          
BLAST of FC878159 vs. ExPASy Swiss-Prot
Match: ISPA_RHISN (Probable geranyltranstransferase OS=Rhizobium sp. (strain NGR234) GN=NGR_a02750 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.916e-14
Identity = 44/102 (43.14%), Postives = 59/102 (57.84%), Query Frame = 3
Query:  504 YMIQKASTVNQALDAAVSLKD--PVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGE 803
            +M   A  V QAL   +  +D    ++  +MRY+ L GGKR R +LCLAA  L      +      +IEM+H  +L+HDDLP MD+D LRRG PT H  +GE
Sbjct:   36 WMQNGAKRVEQALARLLCAEDHGETELMAAMRYATLHGGKRTRALLCLAAGALADTPAHILDDVGAAIEMMHACTLVHDDLPAMDDDVLRRGLPTVHVKFGE 137          
BLAST of FC878159 vs. ExPASy Swiss-Prot
Match: IDSA_METTM (Bifunctional short chain isoprenyl diphosphate synthase OS=Methanobacterium thermoautotrophicum (strain Marburg / DSM 2133) GN=idsA PE=1 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 4.974e-14
Identity = 37/79 (46.84%), Postives = 55/79 (69.62%), Query Frame = 3
Query:  567 PVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGE 803
            P  + ++  + + AGGK++RP L L +C+ VGG+   A   A +IE+IHT SLIHDD+  MD+D +RRG+P+ H I+GE
Sbjct:   28 PDTLLKASEHLITAGGKKIRPSLALLSCEAVGGNPEDAAGVAAAIELIHTFSLIHDDI--MDDDEMRRGEPSVHVIWGE 104          
BLAST of FC878159 vs. ExPASy Swiss-Prot
Match: GGPS_SULAC (Geranylgeranyl pyrophosphate synthetase OS=Sulfolobus acidocaldarius GN=gds PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.890e-13
Identity = 39/102 (38.24%), Postives = 62/102 (60.78%), Query Frame = 3
Query:  495 FKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYG 800
            F +Y  +  ++VN  + + +S  D  K++E+  +   +GGKR+RP++   + DL GG    A  A  +IE++HT +L+HDD+  MD D +RRG PT H  YG
Sbjct:    4 FDNYFNEIVNSVNDIIKSYIS-GDVPKLYEASYHLFTSGGKRLRPLILTISSDLFGGQRERAYYAGAAIEVLHTFTLVHDDI--MDQDNIRRGLPTVHVKYG 102          
The following BLAST results are available for this feature:
BLAST of FC878159 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
CRTE_CYAPA6.909e-3258.10Geranylgeranyl pyrophosphate synthetase homolog OS... [more]
ISPA_BACST1.181e-2355.79Geranyltranstransferase OS=Bacillus stearothermoph... [more]
ISPA_BACSU5.863e-2350.00Geranyltranstransferase OS=Bacillus subtilis GN=is... [more]
ISPA_MICLU1.144e-1855.84Geranyltranstransferase OS=Micrococcus luteus GN=f... [more]
ISPA_AQUAE1.827e-1644.57Geranyltranstransferase OS=Aquifex aeolicus GN=isp... [more]
ISPA_HAEIN1.309e-1442.59Geranyltranstransferase OS=Haemophilus influenzae ... [more]
ISPA_BRAJA2.233e-1443.14Probable geranyltranstransferase OS=Bradyrhizobium... [more]
ISPA_RHISN2.916e-1443.14Probable geranyltranstransferase OS=Rhizobium sp. ... [more]
IDSA_METTM4.974e-1446.84Bifunctional short chain isoprenyl diphosphate syn... [more]
GGPS_SULAC1.890e-1338.24Geranylgeranyl pyrophosphate synthetase OS=Sulfolo... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA83DG02RM1 IVIA1 Citrus clementina cDNA clone IC0AAA83DG02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878159 ID=FC878159; Name=FC878159; organism=Citrus clementina; type=EST; length=847bp
CCAAAATCCAAAGTTTTATCTTTGCCCGCTGTTGGTTGGCCTCCCTCCCT
CCACCGTGCATTTGCGGTTGCCGCTAAATTTCCATCTTTGGTCTAAAGAA
AAAAAAAAGGAAAATGGCTTTGTTTGGTAACATGGTACAATTTGGGCATT
TCTGTTTATGAGTCTCGAAGAAGAAGAAGGAATCGGGAGGATAAAGTGGG
AGAGGCTTACGGCTTGCCTGCCCAGATTGCGTATTCTCGGTTGTCAGTTC
TCGCACCAGTGTAATCTCCATTTCTTCTTGCCTTACCAAAATGAGTTGCG
TCAATCTTGCGGCATGGACTCAAACATGCTCAATCTTTAACCAAGCTAGC
AGTCGCAGATCTAACAAAACTCAGCCGTTCCGTACGCTTACAACACTGCC
CGTTTCCTTGGCTTCACAGAGACCAAGGCGCCCCGTTTCGATCTCCGCAG
TTCAAACTCTCGAGGAAAACCCCGCCCCAAGCCCCACTTTCGATTTCAAG
TCCTACATGATCCAAAAAGCAAGTACCGTCAACCAAGCCTTAGACGCCGC
CGTTTCGCTCAAGGACCCCGTGAAGATCCACGAATCCATGCGATACTCTT
TACTGGCGGGCGGCAAGCGGGTGCGCCCTGTGCTCTGCCTCGCCGCTTGT
GACCTCGTTGGTGGCCACGAGTCCATGGCCATGCCAGCTGCATGCTCTAT
CGAGATGATCCACACCATGTCCTTAATTCACGACGATTTGCCTTGCATGG
ATAACGACCCTCTACGTCGAGGGAAGCCCACGAACCACACGATCTACGGC
GAAGACGTCGCCGTTTTGGCCGGCGATGCGCTTTTGGCCTATGCTTT
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