FC878161

Overview
NameFC878161
Unique NameFC878161
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length875
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878161 vs. ExPASy Swiss-Prot
Match: ATHB4_ARATH (Homeobox-leucine zipper protein ATHB-4 OS=Arabidopsis thaliana GN=ATHB-4 PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 2.428e-43
Identity = 102/204 (50.00%), Postives = 127/204 (62.25%), Query Frame = 3
Query:  288 TTKKNSNSIDVNKGYEESAAAGVAEYQILNRQA----SPHSAVSNSFSSGR--VVKRERDLXXXXXXXXXXXXXRASDEDEDGVN---ARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLHXXXXXXXXXXXXXPLYMHM-PAATLTMCLSCERI 869
            T ++NS++    +G+  + A        L  +A    SP+SAVS+   + R   V R  D                  +DEDG N   +RKKLRL+K+Q+ +LEE+FK+HSTLNPKQK ALA+QLNLR RQVEVWFQNRRARTKLKQTEVDCE+LK+CC+ LT+ENRRL               LYMHM P  TLTMC SCER+
Sbjct:   73 TAERNSDAGSFLRGFNVNRAQSSVAVVDLEEEAAVVSSPNSAVSSLSGNKRDLAVARGGDENEAERASCSRGGGSGGSDDEDGGNGDGSRKKLRLSKDQALVLEETFKEHSTLNPKQKLALAKQLNLRARQVEVWFQNRRARTKLKQTEVDCEYLKRCCDNLTEENRRLQKEVSELRALKLSPHLYMHMTPPTTLTMCPSCERV 276          
BLAST of FC878161 vs. ExPASy Swiss-Prot
Match: HAT3_ARATH (Homeobox-leucine zipper protein HAT3 OS=Arabidopsis thaliana GN=HAT3 PE=2 SV=2)

HSP 1 Score: 172.555 bits (436), Expect = 2.685e-42
Identity = 107/214 (50.00%), Postives = 132/214 (61.68%), Query Frame = 3
Query:  288 TTKKNSNSIDVNKGYEESAAAGVAEYQILNRQA---SPHSAVSNSFSSGRVVKRERDLXXXXXXXXXXXXX-----RAS------DEDEDGV-----NARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLHXXXXXXXXXXXXXPLYMHM-PAATLTMCLSCERI 869
            ++++NS+     +G + + A       + +  A   SP+S VS S  SG+  K ER+L                  RAS       +DEDG      ++RKKLRL+KEQ+ +LEE+FK+HSTLNPKQK ALA+QLNLR RQVEVWFQNRRARTKLKQTEVDCE+LK+CCE LTDENRRL               LYMHM P  TLTMC SCER+
Sbjct:   65 SSERNSDMRSFLRGIDVNRAPSTVVVDVEDEGAGVSSPNSTVS-SVMSGK--KSERELMAAAGAVGGGRVEDNEIERASCSLGGGSDDEDGSGNGDDSSRKKLRLSKEQALVLEETFKEHSTLNPKQKMALAKQLNLRTRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTDENRRLQKEVSELRALKLSPHLYMHMKPPTTLTMCPSCERV 275          
BLAST of FC878161 vs. ExPASy Swiss-Prot
Match: HOX15_ORYSJ (Homeobox-leucine zipper protein HOX15 OS=Oryza sativa subsp. japonica GN=HOX15 PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 3.506e-42
Identity = 87/131 (66.41%), Postives = 101/131 (77.10%), Query Frame = 3
Query:  495 ASDEDEDGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLHXXXXXXXXXXXXXPLYMHM------PAATLTMCLSCERI 869
            A+ +D++G N+RKKLRL+KEQSALLE+ FK+HSTLNPKQK ALA+QLNLRPRQVEVWFQNRRARTKLKQTEVDCE LK+CCETLT+ENRRLH                  M      PAATL++C SCER+
Sbjct:   82 AAADDDEGCNSRKKLRLSKEQSALLEDRFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCELLKRCCETLTEENRRLHRELQQLRALTHSTAAGFFMATTLPVPAATLSICPSCERL 212          
BLAST of FC878161 vs. ExPASy Swiss-Prot
Match: HOX15_ORYSI (Homeobox-leucine zipper protein HOX15 OS=Oryza sativa subsp. indica GN=HOX15 PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 3.506e-42
Identity = 87/131 (66.41%), Postives = 101/131 (77.10%), Query Frame = 3
Query:  495 ASDEDEDGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLHXXXXXXXXXXXXXPLYMHM------PAATLTMCLSCERI 869
            A+ +D++G N+RKKLRL+KEQSALLE+ FK+HSTLNPKQK ALA+QLNLRPRQVEVWFQNRRARTKLKQTEVDCE LK+CCETLT+ENRRLH                  M      PAATL++C SCER+
Sbjct:   82 AAADDDEGCNSRKKLRLSKEQSALLEDRFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCELLKRCCETLTEENRRLHRELQQLRALTHSTAAGFFMATTLPVPAATLSICPSCERL 212          
BLAST of FC878161 vs. ExPASy Swiss-Prot
Match: HOX1_ORYSJ (Homeobox-leucine zipper protein HOX1 OS=Oryza sativa subsp. japonica GN=HOX1 PE=1 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 8.636e-41
Identity = 84/133 (63.16%), Postives = 102/133 (76.69%), Query Frame = 3
Query:  495 ASDEDEDGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLH----XXXXXXXXXXXXXPLYMH----MPAATLTMCLSCERI 869
            ASD+++ G  +RKKLRL+K+Q+A+LE++FK+H+TLNPKQK ALARQLNL+PRQVEVWFQNRRARTKLKQTEVDCE LK+CCETLTDENRRLH                 P +++     P  TLTMC SCER+
Sbjct:  145 ASDDEDSGGGSRKKLRLSKDQAAVLEDTFKEHNTLNPKQKAALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCELLKRCCETLTDENRRLHRELQELRALKLATAAAAPHHLYGARVPPPTTLTMCPSCERV 277          
BLAST of FC878161 vs. ExPASy Swiss-Prot
Match: HOX1_ORYSI (Homeobox-leucine zipper protein HOX1 OS=Oryza sativa subsp. indica GN=HOX1 PE=1 SV=2)

HSP 1 Score: 167.548 bits (423), Expect = 8.636e-41
Identity = 84/133 (63.16%), Postives = 102/133 (76.69%), Query Frame = 3
Query:  495 ASDEDEDGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLH----XXXXXXXXXXXXXPLYMH----MPAATLTMCLSCERI 869
            ASD+++ G  +RKKLRL+K+Q+A+LE++FK+H+TLNPKQK ALARQLNL+PRQVEVWFQNRRARTKLKQTEVDCE LK+CCETLTDENRRLH                 P +++     P  TLTMC SCER+
Sbjct:  145 ASDDEDSGGGSRKKLRLSKDQAAVLEDTFKEHNTLNPKQKAALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCELLKRCCETLTDENRRLHRELQELRALKLATAAAAPHHLYGARVPPPTTLTMCPSCERV 277          
BLAST of FC878161 vs. ExPASy Swiss-Prot
Match: HAT2_ARATH (Homeobox-leucine zipper protein HAT2 OS=Arabidopsis thaliana GN=HAT2 PE=2 SV=2)

HSP 1 Score: 166.007 bits (419), Expect = 2.513e-40
Identity = 111/271 (40.96%), Postives = 140/271 (51.66%), Query Frame = 3
Query:   87 MGFDDGCNTGLVLGLGFASAIETTPTNKANNINIVNHQQLQLPKGTCFEPSLSL------GLPGEIYPEAATATTKKNSNSIDVNKGYEESAAAGVAEYQILNRQASPHSAVSNSFSSGRVVKRERDLXXXXXXXXXXXXXRASDEDEDG-VNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLHXXXXXXXXXXXXXPLYMHM-PAATLTMCLSCERIGG 875
            MG +D    GL L LGF+        N   N ++ N+ Q +LP    F+P+  L        P  +  E  T  +  NS       G + S   G++   + +            +S G                        SDE+EDG   +RKKLRL+K+QSA LEE+FK+H+TLNPKQK ALA++LNL  RQVEVWFQNRRARTKLKQTEVDCE+LK+C E LT+ENRRL                Y  M P  TL MC SCER+GG
Sbjct:    3 MGKED---LGLSLSLGFSQNHNPLQMNLNPNSSLSNNLQ-RLPWNQTFDPTSDLRKIDVNSFPSTVNCEEDTGVSSPNSTISSTISG-KRSEREGISGTGVGSGDDHDEITPDRGYSRG-----------------------TSDEEEDGGETSRKKLRLSKDQSAFLEETFKEHNTLNPKQKLALAKKLNLTARQVEVWFQNRRARTKLKQTEVDCEYLKRCVEKLTEENRRLQKEAMELRTLKLSPQFYGQMTPPTTLIMCPSCERVGG 245          
BLAST of FC878161 vs. ExPASy Swiss-Prot
Match: HOX17_ORYSJ (Homeobox-leucine zipper protein HOX17 OS=Oryza sativa subsp. japonica GN=HOX17 PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 4.286e-40
Identity = 85/129 (65.89%), Postives = 100/129 (77.52%), Query Frame = 3
Query:  498 SDEDEDGVN---ARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLHXXXXXXXXXXXXXP-LYMHM-PAATLTMCLSCERI 869
            SDE++ G     +RKKLRL+K+QSA+LE+SF++H TLNP+QK  LA+QL LRPRQVEVWFQNRRARTKLKQTEVDCEFLK+CCETLT+ENRRL              P LYM+M P  TLTMC SCER+
Sbjct:   68 SDEEDGGCGIDGSRKKLRLSKDQSAVLEDSFREHPTLNPRQKATLAQQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTEENRRLQKEVQELRALKLVSPHLYMNMSPPTTLTMCPSCERV 196          
BLAST of FC878161 vs. ExPASy Swiss-Prot
Match: HOX17_ORYSI (Homeobox-leucine zipper protein HOX17 OS=Oryza sativa subsp. indica GN=HOX17 PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 4.286e-40
Identity = 85/129 (65.89%), Postives = 100/129 (77.52%), Query Frame = 3
Query:  498 SDEDEDGVN---ARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLHXXXXXXXXXXXXXP-LYMHM-PAATLTMCLSCERI 869
            SDE++ G     +RKKLRL+K+QSA+LE+SF++H TLNP+QK  LA+QL LRPRQVEVWFQNRRARTKLKQTEVDCEFLK+CCETLT+ENRRL              P LYM+M P  TLTMC SCER+
Sbjct:   68 SDEEDGGCGIDGSRKKLRLSKDQSAVLEDSFREHPTLNPRQKATLAQQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTEENRRLQKEVQELRALKLVSPHLYMNMSPPTTLTMCPSCERV 196          
BLAST of FC878161 vs. ExPASy Swiss-Prot
Match: HAT1_ARATH (Homeobox-leucine zipper protein HAT1 OS=Arabidopsis thaliana GN=HAT1 PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 2.600e-37
Identity = 90/173 (52.02%), Postives = 111/173 (64.16%), Query Frame = 3
Query:  384 ASPHSAVSNSFSSGR-VVKRERDLXXXXXXXXXXXXXRAS-----DEDED--GVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLHXXXXXXXXXXXXXPLYMHM-PAATLTMCLSCERIGG 875
            +SP+S +S++ S  R   +RE                R+S     DE+ED  G   RKKLRL+K+QSA+LE++FK+H+TLNPKQK ALA++L L  RQVEVWFQNRRARTKLKQTEVDCE+LK+C E LT+ENRRL               LY  M P  TL MC SCER+ G
Sbjct:   78 SSPNSTISSTVSGKRRSTEREGTSGGGCGDDLDITLDRSSSRGTSDEEEDYGGETCRKKLRLSKDQSAVLEDTFKEHNTLNPKQKLALAKKLGLTARQVEVWFQNRRARTKLKQTEVDCEYLKRCVEKLTEENRRLEKEAAELRALKLSPRLYGQMSPPTTLLMCPSCERVAG 250          
The following BLAST results are available for this feature:
BLAST of FC878161 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
ATHB4_ARATH2.428e-4350.00Homeobox-leucine zipper protein ATHB-4 OS=Arabidop... [more]
HAT3_ARATH2.685e-4250.00Homeobox-leucine zipper protein HAT3 OS=Arabidopsi... [more]
HOX15_ORYSJ3.506e-4266.41Homeobox-leucine zipper protein HOX15 OS=Oryza sat... [more]
HOX15_ORYSI3.506e-4266.41Homeobox-leucine zipper protein HOX15 OS=Oryza sat... [more]
HOX1_ORYSJ8.636e-4163.16Homeobox-leucine zipper protein HOX1 OS=Oryza sati... [more]
HOX1_ORYSI8.636e-4163.16Homeobox-leucine zipper protein HOX1 OS=Oryza sati... [more]
HAT2_ARATH2.513e-4040.96Homeobox-leucine zipper protein HAT2 OS=Arabidopsi... [more]
HOX17_ORYSJ4.286e-4065.89Homeobox-leucine zipper protein HOX17 OS=Oryza sat... [more]
HOX17_ORYSI4.286e-4065.89Homeobox-leucine zipper protein HOX17 OS=Oryza sat... [more]
HAT1_ARATH2.600e-3752.02Homeobox-leucine zipper protein HAT1 OS=Arabidopsi... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA76CA12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA76CA12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878161 ID=FC878161; Name=FC878161; organism=Citrus clementina; type=EST; length=875bp
ATTTCCTCTCTTTTTTTCTTTATTTTTCTCTCCTTCGCTTCAGAAGTCCC
GAGTGTTTCTCAAGACTCTCGAATCTCATATCTTAAATGGGTTTTGATGA
TGGGTGTAACACGGGCCTCGTGCTAGGGTTAGGTTTCGCATCAGCCATAG
AAACTACTCCAACAAATAAGGCGAACAATATAAATATTGTCAACCACCAG
CAGCTGCAGCTGCCTAAGGGTACATGTTTTGAGCCATCGCTTAGTCTGGG
CCTTCCTGGTGAGATTTACCCTGAGGCTGCTACTGCTACTACCAAAAAGA
ATAGTAATAGTATTGATGTGAACAAAGGTTATGAGGAATCCGCAGCAGCA
GGCGTCGCCGAATATCAAATACTAAATCGTCAGGCTTCTCCTCACAGTGC
TGTTTCTAATTCCTTCTCTAGCGGTAGAGTCGTCAAGAGGGAGAGAGACC
TTAGCAGTGAAGAGATAGAGGTTGAAAAAGTTATTTCCTCAAGAGCCAGT
GATGAAGATGAAGACGGTGTTAATGCCAGAAAGAAACTTAGGCTCACCAA
AGAACAATCTGCTCTTCTTGAGGAAAGCTTCAAACAGCATAGCACTCTCA
ATCCGAAGCAAAAGCAAGCTTTGGCAAGGCAACTAAACCTACGGCCAAGA
CAAGTTGAAGTATGGTTCCAGAATAGGAGAGCCAGGACAAAGCTCAAGCA
AACAGAAGTGGACTGTGAATTCTTGAAGAAATGCTGTGAAACACTAACTG
ATGAAAACAGAAGGCTGCATAANGAGCTACAAGAACTCAAAGCTCTGAAG
CTAGCTCAGCCTCTTTACATGCATATGCCGGCAGCTACCCTGACGATGTG
CCTTTCTTGTGAACGGATCGGCGGC
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