FC878161

Overview
NameFC878161
Unique NameFC878161
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length875
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878161 vs. ExPASy Swiss-Prot
Match: HOX2_ORYSJ (Homeobox-leucine zipper protein HOX2 OS=Oryza sativa subsp. japonica GN=HOX2 PE=1 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 2.201e-36
Identity = 107/238 (44.96%), Postives = 128/238 (53.78%), Query Frame = 3
Query:  237 SLSLGLPGEIYPEAATATTKKNS-----------NSI--DVNKGYEESAAA-----GVAEYQILNRQAS--PHSAVSNSFSSGRVVKRERDLXXXXXXXXXXXXXRASDEDEDGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLHXXXXXXXXXXXXXPLYM-------HMPAATLTMCLSCERI 869
            SL LGL  +    ++T TT               NSI  DV +    + AA     GV   ++   +AS  P SA + S +SG   KRER+L                D+  DG   RKKLRL+K+Q+A+LEE FK HSTLNPKQK ALA +L LRPRQVEVWFQNRRARTKLKQTEVDCE+LK+ CE L DEN+RL                            AATLTMC SC R+
Sbjct:    7 SLGLGLASQGSLTSSTTTTSSPGAGSSSPWAAALNSIVGDVRRDQAAAHAAAAVGVGVGGEEMYQGRASTSPDSAAALSSASG---KRERELERSGSGVD-------DDDGADGAGGRKKLRLSKDQAAVLEECFKTHSTLNPKQKVALANRLGLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRWCERLADENKRLEKELADLRALKAAPSPASASAMQPSSSAAATLTMCPSCRRV 234          
BLAST of FC878161 vs. ExPASy Swiss-Prot
Match: HOX2_ORYSI (Homeobox-leucine zipper protein HOX2 OS=Oryza sativa subsp. indica GN=HOX2 PE=1 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 2.201e-36
Identity = 107/238 (44.96%), Postives = 128/238 (53.78%), Query Frame = 3
Query:  237 SLSLGLPGEIYPEAATATTKKNS-----------NSI--DVNKGYEESAAA-----GVAEYQILNRQAS--PHSAVSNSFSSGRVVKRERDLXXXXXXXXXXXXXRASDEDEDGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLHXXXXXXXXXXXXXPLYM-------HMPAATLTMCLSCERI 869
            SL LGL  +    ++T TT               NSI  DV +    + AA     GV   ++   +AS  P SA + S +SG   KRER+L                D+  DG   RKKLRL+K+Q+A+LEE FK HSTLNPKQK ALA +L LRPRQVEVWFQNRRARTKLKQTEVDCE+LK+ CE L DEN+RL                            AATLTMC SC R+
Sbjct:    7 SLGLGLASQGSLTSSTTTTSSPGAGSSSPWAAALNSIVGDVRRDQAAAHAAAAVGVGVGGEEMYQGRASTSPDSAAALSSASG---KRERELERSGSGVD-------DDDGADGAGGRKKLRLSKDQAAVLEECFKTHSTLNPKQKVALANRLGLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRWCERLADENKRLEKELADLRALKAAPSPASASAMQPSSSAAATLTMCPSCRRV 234          
BLAST of FC878161 vs. ExPASy Swiss-Prot
Match: HOX7_ORYSJ (Homeobox-leucine zipper protein HOX7 OS=Oryza sativa subsp. japonica GN=HOX7 PE=1 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 3.755e-36
Identity = 84/133 (63.16%), Postives = 92/133 (69.17%), Query Frame = 3
Query:  495 ASDEDEDGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRL-----HXXXXXXXXXXXXXPLY--MHMPAATLT---MCLSCE 863
            A DED  G  ARKKLRL+KEQS+ LE+SFK+HSTL PKQK  LA +LNLRPRQVEVWFQNRRARTKLKQTEVDCE LK+CCE LT ENRRL                   PLY   H+PAA  T   +C SCE
Sbjct:  141 ADDEDNGGGGARKKLRLSKEQSSFLEDSFKEHSTLTPKQKSDLANRLNLRPRQVEVWFQNRRARTKLKQTEVDCEHLKRCCERLTRENRRLQREVAELRGTLRTTTSSYPPLYGLHHLPAAAGTVFRVCPSCE 273          
BLAST of FC878161 vs. ExPASy Swiss-Prot
Match: HOX7_ORYSI (Homeobox-leucine zipper protein HOX7 OS=Oryza sativa subsp. indica GN=HOX7 PE=1 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 3.755e-36
Identity = 84/133 (63.16%), Postives = 92/133 (69.17%), Query Frame = 3
Query:  495 ASDEDEDGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRL-----HXXXXXXXXXXXXXPLY--MHMPAATLT---MCLSCE 863
            A DED  G  ARKKLRL+KEQS+ LE+SFK+HSTL PKQK  LA +LNLRPRQVEVWFQNRRARTKLKQTEVDCE LK+CCE LT ENRRL                   PLY   H+PAA  T   +C SCE
Sbjct:  141 ADDEDNGGGGARKKLRLSKEQSSFLEDSFKEHSTLTPKQKSDLANRLNLRPRQVEVWFQNRRARTKLKQTEVDCEHLKRCCERLTRENRRLQREVAELRGALRTTTSSYPPLYGLHHLPAAAGTVFRVCPSCE 273          
BLAST of FC878161 vs. ExPASy Swiss-Prot
Match: HOX28_ORYSJ (Homeobox-leucine zipper protein HOX28 OS=Oryza sativa subsp. japonica GN=HOX28 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 4.151e-35
Identity = 77/122 (63.11%), Postives = 87/122 (71.31%), Query Frame = 3
Query:  507 DEDGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLH-XXXXXXXXXXXXXPLYMHMPAATLTMCLSCERI 869
            D  G  ARKKLRL+K+Q+A+LEE FK H TL PKQK ALA+ LNLRPRQVEVWFQNRRARTKLKQTEVDCE LK+ C+ L D+NRRLH              P     P  TLTMCLSC+R+
Sbjct:   86 DVGGGGARKKLRLSKDQAAVLEECFKTHHTLTPKQKVALAKSLNLRPRQVEVWFQNRRARTKLKQTEVDCEHLKRWCDQLADDNRRLHKELAELRALKATPTPPAAAPPLTTLTMCLSCKRV 207          
BLAST of FC878161 vs. ExPASy Swiss-Prot
Match: HOX28_ORYSI (Homeobox-leucine zipper protein HOX28 OS=Oryza sativa subsp. indica GN=HOX28 PE=2 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 4.151e-35
Identity = 77/122 (63.11%), Postives = 87/122 (71.31%), Query Frame = 3
Query:  507 DEDGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLH-XXXXXXXXXXXXXPLYMHMPAATLTMCLSCERI 869
            D  G  ARKKLRL+K+Q+A+LEE FK H TL PKQK ALA+ LNLRPRQVEVWFQNRRARTKLKQTEVDCE LK+ C+ L D+NRRLH              P     P  TLTMCLSC+R+
Sbjct:   86 DVGGGGARKKLRLSKDQAAVLEECFKTHHTLTPKQKVALAKSLNLRPRQVEVWFQNRRARTKLKQTEVDCEHLKRWCDQLADDNRRLHKELAELRALKATPTPPAAAPPLTTLTMCLSCKRV 207          
BLAST of FC878161 vs. ExPASy Swiss-Prot
Match: HOX3_ORYSJ (Homeobox-leucine zipper protein HOX3 OS=Oryza sativa subsp. japonica GN=HOX3 PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.477e-32
Identity = 76/132 (57.58%), Postives = 91/132 (68.94%), Query Frame = 3
Query:  501 DEDEDGVNAR---KKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLHXXXXXXXXXXXXXPLYMH------MPAATLTMCLSCERI 869
            DE+E GV      KKLRL+KEQS LLEESF+ + TL PKQK+ALA +L LRPRQVEVWFQNRRARTKLKQTE++CE+LK+C  +LT+ENRRL              P  +       +PA+ LTMC  CERI
Sbjct:   65 DEEERGVGGPHRPKKLRLSKEQSRLLEESFRLNHTLTPKQKEALAIKLKLRPRQVEVWFQNRRARTKLKQTEMECEYLKRCFGSLTEENRRLQREVEELRAMRVAPPTVLSPHTRQPLPASALTMCPRCERI 196          
BLAST of FC878161 vs. ExPASy Swiss-Prot
Match: HOX3_ORYSI (Homeobox-leucine zipper protein HOX3 OS=Oryza sativa subsp. indica GN=HOX3 PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.477e-32
Identity = 76/132 (57.58%), Postives = 91/132 (68.94%), Query Frame = 3
Query:  501 DEDEDGVNAR---KKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLHXXXXXXXXXXXXXPLYMH------MPAATLTMCLSCERI 869
            DE+E GV      KKLRL+KEQS LLEESF+ + TL PKQK+ALA +L LRPRQVEVWFQNRRARTKLKQTE++CE+LK+C  +LT+ENRRL              P  +       +PA+ LTMC  CERI
Sbjct:   65 DEEERGVGGPHRPKKLRLSKEQSRLLEESFRLNHTLTPKQKEALAIKLKLRPRQVEVWFQNRRARTKLKQTEMECEYLKRCFGSLTEENRRLQREVEELRAMRVAPPTVLSPHTRQPLPASALTMCPRCERI 196          
BLAST of FC878161 vs. ExPASy Swiss-Prot
Match: HOX18_ORYSJ (Homeobox-leucine zipper protein HOX18 OS=Oryza sativa subsp. japonica GN=HOX18 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 6.203e-31
Identity = 71/128 (55.47%), Postives = 87/128 (67.97%), Query Frame = 3
Query:  516 GVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLH------XXXXXXXXXXXXXPLYMHMP----AATLTMCLSCERI 869
            G   RKKL+LTKEQS LLE+SF+ H+ L+  QK  LARQL L+PRQVEVWFQNRRARTKLKQTEVDCEFLK+CCE+LT+EN++L                     LY+  P    AA + +C SCE++
Sbjct:  110 GGGTRKKLQLTKEQSTLLEDSFRVHNILSHAQKHELARQLKLKPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCESLTEENKQLKHELMELRRLASPAAAAAGSQLYVQFPRAAAAAMVNVCPSCEKV 237          
BLAST of FC878161 vs. ExPASy Swiss-Prot
Match: HOX18_ORYSI (Homeobox-leucine zipper protein HOX18 OS=Oryza sativa subsp. indica GN=HOX18 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 6.203e-31
Identity = 71/128 (55.47%), Postives = 87/128 (67.97%), Query Frame = 3
Query:  516 GVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLH------XXXXXXXXXXXXXPLYMHMP----AATLTMCLSCERI 869
            G   RKKL+LTKEQS LLE+SF+ H+ L+  QK  LARQL L+PRQVEVWFQNRRARTKLKQTEVDCEFLK+CCE+LT+EN++L                     LY+  P    AA + +C SCE++
Sbjct:  110 GGGTRKKLQLTKEQSTLLEDSFRVHNILSHAQKHELARQLKLKPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCESLTEENKQLKHELMELRRLASAAAAAAGSQLYVQFPRAAAAAMVNVCPSCEKV 237          
The following BLAST results are available for this feature:
BLAST of FC878161 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
HOX2_ORYSJ2.201e-3644.96Homeobox-leucine zipper protein HOX2 OS=Oryza sati... [more]
HOX2_ORYSI2.201e-3644.96Homeobox-leucine zipper protein HOX2 OS=Oryza sati... [more]
HOX7_ORYSJ3.755e-3663.16Homeobox-leucine zipper protein HOX7 OS=Oryza sati... [more]
HOX7_ORYSI3.755e-3663.16Homeobox-leucine zipper protein HOX7 OS=Oryza sati... [more]
HOX28_ORYSJ4.151e-3563.11Homeobox-leucine zipper protein HOX28 OS=Oryza sat... [more]
HOX28_ORYSI4.151e-3563.11Homeobox-leucine zipper protein HOX28 OS=Oryza sat... [more]
HOX3_ORYSJ1.477e-3257.58Homeobox-leucine zipper protein HOX3 OS=Oryza sati... [more]
HOX3_ORYSI1.477e-3257.58Homeobox-leucine zipper protein HOX3 OS=Oryza sati... [more]
HOX18_ORYSJ6.203e-3155.47Homeobox-leucine zipper protein HOX18 OS=Oryza sat... [more]
HOX18_ORYSI6.203e-3155.47Homeobox-leucine zipper protein HOX18 OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA76CA12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA76CA12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878161 ID=FC878161; Name=FC878161; organism=Citrus clementina; type=EST; length=875bp
ATTTCCTCTCTTTTTTTCTTTATTTTTCTCTCCTTCGCTTCAGAAGTCCC
GAGTGTTTCTCAAGACTCTCGAATCTCATATCTTAAATGGGTTTTGATGA
TGGGTGTAACACGGGCCTCGTGCTAGGGTTAGGTTTCGCATCAGCCATAG
AAACTACTCCAACAAATAAGGCGAACAATATAAATATTGTCAACCACCAG
CAGCTGCAGCTGCCTAAGGGTACATGTTTTGAGCCATCGCTTAGTCTGGG
CCTTCCTGGTGAGATTTACCCTGAGGCTGCTACTGCTACTACCAAAAAGA
ATAGTAATAGTATTGATGTGAACAAAGGTTATGAGGAATCCGCAGCAGCA
GGCGTCGCCGAATATCAAATACTAAATCGTCAGGCTTCTCCTCACAGTGC
TGTTTCTAATTCCTTCTCTAGCGGTAGAGTCGTCAAGAGGGAGAGAGACC
TTAGCAGTGAAGAGATAGAGGTTGAAAAAGTTATTTCCTCAAGAGCCAGT
GATGAAGATGAAGACGGTGTTAATGCCAGAAAGAAACTTAGGCTCACCAA
AGAACAATCTGCTCTTCTTGAGGAAAGCTTCAAACAGCATAGCACTCTCA
ATCCGAAGCAAAAGCAAGCTTTGGCAAGGCAACTAAACCTACGGCCAAGA
CAAGTTGAAGTATGGTTCCAGAATAGGAGAGCCAGGACAAAGCTCAAGCA
AACAGAAGTGGACTGTGAATTCTTGAAGAAATGCTGTGAAACACTAACTG
ATGAAAACAGAAGGCTGCATAANGAGCTACAAGAACTCAAAGCTCTGAAG
CTAGCTCAGCCTCTTTACATGCATATGCCGGCAGCTACCCTGACGATGTG
CCTTTCTTGTGAACGGATCGGCGGC
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