FC878161

Overview
NameFC878161
Unique NameFC878161
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length875
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878161 vs. ExPASy Swiss-Prot
Match: ATB17_ARATH (Homeobox-leucine zipper protein ATHB-17 OS=Arabidopsis thaliana GN=ATHB-17 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 4.021e-30
Identity = 68/121 (56.20%), Postives = 88/121 (72.73%), Query Frame = 3
Query:  507 DEDGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLHXXXXXXXXXXXXXPLYMHMPAATLTMCLSCERI 869
            D+     RKKLRLT+EQS LLE+SF+Q+ TLNPKQK+ LA+ L LRPRQ+EVWFQNRRAR+KLKQTE++CE+LK+   +LT+EN RLH             P  ++  A++LTMC  CER+
Sbjct:  131 DDGSAPPRKKLRLTREQSRLLEDSFRQNHTLNPKQKEVLAKHLMLRPRQIEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEENHRLH-REVEELRAMKVGPTTVN-SASSLTMCPRCERV 249          
BLAST of FC878161 vs. ExPASy Swiss-Prot
Match: ATHBX_ARATH (Homeobox-leucine zipper protein ATHB-X OS=Arabidopsis thaliana GN=ATHB-X PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.339e-25
Identity = 67/125 (53.60%), Postives = 81/125 (64.80%), Query Frame = 3
Query:  501 DEDEDGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLHXXXXXXXXXXXXXPLYMHMPAAT--LTMCLSCERI 869
            D+   G   RKKLRLTKEQS LLEESF Q+ TL PKQK+ LA  L L  RQVEVWFQNRRAR+KLK TE++CE+LK+   +L ++NRRL               L    P++T  LTMC  CER+
Sbjct:   59 DDSNSGGRRRKKLRLTKEQSHLLEESFIQNHTLTPKQKKDLATFLKLSQRQVEVWFQNRRARSKLKHTEMECEYLKRWFGSLKEQNRRLQ---------IEVEELRALKPSSTSALTMCPRCERV 174          
BLAST of FC878161 vs. ExPASy Swiss-Prot
Match: HOX26_ORYSJ (Putative homeobox-leucine zipper protein HOX26 OS=Oryza sativa subsp. japonica GN=HOX26 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.645e-23
Identity = 59/118 (50.00%), Postives = 76/118 (64.41%), Query Frame = 3
Query:  507 DEDGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLHXXXXXXXXXXXXXPLYMHMPAATLTMCLSC 860
            DE+G + RKKLRLT EQ+ LLE+SF+ H+ L+  +KQ LA +L L  RQVEVWFQNRRARTKLKQTE DC+ L++ C+ L  +N RL              P+   +  AT  +C SC
Sbjct:  110 DEEGAS-RKKLRLTGEQATLLEDSFRAHNILSHAEKQELAGKLGLSARQVEVWFQNRRARTKLKQTEADCDLLRRWCDHLAADNARLRRDLAELRRSSSSPPV-SGLAVATPVVCPSC 225          
BLAST of FC878161 vs. ExPASy Swiss-Prot
Match: HOX16_ORYSJ (Homeobox-leucine zipper protein HOX16 OS=Oryza sativa subsp. japonica GN=HOX16 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.813e-14
Identity = 45/87 (51.72%), Postives = 55/87 (63.22%), Query Frame = 3
Query:  531 KKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCC-------ETLTDENRRLH 770
            KK RLT EQ  LLE SF++ + L P++K  LAR+L L+PRQV VWFQNRRAR K KQ E D + LK          + L  +N RLH
Sbjct:   77 KKRRLTPEQVHLLERSFEEENKLEPERKTELARKLGLQPRQVAVWFQNRRARWKTKQLERDFDRLKASFDALRADHDALLQDNHRLH 163          
BLAST of FC878161 vs. ExPASy Swiss-Prot
Match: HOX16_ORYSI (Homeobox-leucine zipper protein HOX16 OS=Oryza sativa subsp. indica GN=HOX16 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.813e-14
Identity = 45/87 (51.72%), Postives = 55/87 (63.22%), Query Frame = 3
Query:  531 KKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCC-------ETLTDENRRLH 770
            KK RLT EQ  LLE SF++ + L P++K  LAR+L L+PRQV VWFQNRRAR K KQ E D + LK          + L  +N RLH
Sbjct:   79 KKRRLTPEQVHLLERSFEEENKLEPERKTELARKLGLQPRQVAVWFQNRRARWKTKQLERDFDRLKASFDALRADHDALLQDNHRLH 165          
BLAST of FC878161 vs. ExPASy Swiss-Prot
Match: HOX5_ORYSJ (Homeobox-leucine zipper protein HOX5 OS=Oryza sativa subsp. japonica GN=HOX5 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.891e-14
Identity = 42/89 (47.19%), Postives = 55/89 (61.80%), Query Frame = 3
Query:  501 DEDEDGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRL 767
            +E  D     KK RLT EQ  +LE SF++ + L P++K  LAR+L + PRQV VWFQNRRAR K KQ E D + LK   + L  ++  L
Sbjct:   76 EEYYDEQAPEKKRRLTAEQVQMLERSFEEENKLEPERKTELARRLGMAPRQVAVWFQNRRARWKTKQLEHDFDRLKAAYDALAADHHAL 164          
BLAST of FC878161 vs. ExPASy Swiss-Prot
Match: HOX5_ORYSI (Homeobox-leucine zipper protein HOX5 OS=Oryza sativa subsp. indica GN=HOX5 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.891e-14
Identity = 42/89 (47.19%), Postives = 55/89 (61.80%), Query Frame = 3
Query:  501 DEDEDGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRL 767
            +E  D     KK RLT EQ  +LE SF++ + L P++K  LAR+L + PRQV VWFQNRRAR K KQ E D + LK   + L  ++  L
Sbjct:   76 EEYYDEQAPEKKRRLTAEQVQMLERSFEEENKLEPERKTELARRLGMAPRQVAVWFQNRRARWKTKQLEHDFDRLKAAYDALAADHHAL 164          
BLAST of FC878161 vs. ExPASy Swiss-Prot
Match: HOX23_ORYSJ (Homeobox-leucine zipper protein HOX23 OS=Oryza sativa subsp. japonica GN=HOX23 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.891e-14
Identity = 44/98 (44.90%), Postives = 58/98 (59.18%), Query Frame = 3
Query:  495 ASDEDEDGVNA-------RKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRL 767
            AS+++EDG           KK RL+ EQ   LE SF+  + L P++K  LAR L L+PRQV +WFQNRRAR K KQ E D + L++  +    EN  L
Sbjct:   85 ASEDEEDGCGGGGGGGGGEKKRRLSVEQVRTLERSFESGNKLEPERKAQLARALGLQPRQVAIWFQNRRARWKTKQLEKDFDALRRQLDAARAENDAL 182          
BLAST of FC878161 vs. ExPASy Swiss-Prot
Match: HOX23_ORYSI (Homeobox-leucine zipper protein HOX23 OS=Oryza sativa subsp. indica GN=HOX23 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.891e-14
Identity = 44/98 (44.90%), Postives = 58/98 (59.18%), Query Frame = 3
Query:  495 ASDEDEDGVNA-------RKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRL 767
            AS+++EDG           KK RL+ EQ   LE SF+  + L P++K  LAR L L+PRQV +WFQNRRAR K KQ E D + L++  +    EN  L
Sbjct:   85 ASEDEEDGCGGGGGGGGGEKKRRLSVEQVRTLERSFESGNKLEPERKAQLARALGLQPRQVAIWFQNRRARWKTKQLEKDFDALRRQLDAARAENDAL 182          
BLAST of FC878161 vs. ExPASy Swiss-Prot
Match: HAT5_ARATH (Homeobox-leucine zipper protein HAT5 OS=Arabidopsis thaliana GN=HAT5 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.999e-14
Identity = 42/82 (51.22%), Postives = 53/82 (64.63%), Query Frame = 3
Query:  501 DEDEDGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETL 746
            D+  D     KK RLT EQ  LLE+SF+  + L P++K  LA++L L+PRQV VWFQNRRAR K KQ E D + LK   + L
Sbjct:   58 DDFYDDQLPEKKRRLTTEQVHLLEKSFETENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDLLKSTYDQL 139          
The following BLAST results are available for this feature:
BLAST of FC878161 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
ATB17_ARATH4.021e-3056.20Homeobox-leucine zipper protein ATHB-17 OS=Arabido... [more]
ATHBX_ARATH1.339e-2553.60Homeobox-leucine zipper protein ATHB-X OS=Arabidop... [more]
HOX26_ORYSJ3.645e-2350.00Putative homeobox-leucine zipper protein HOX26 OS=... [more]
HOX16_ORYSJ1.813e-1451.72Homeobox-leucine zipper protein HOX16 OS=Oryza sat... [more]
HOX16_ORYSI1.813e-1451.72Homeobox-leucine zipper protein HOX16 OS=Oryza sat... [more]
HOX5_ORYSJ6.891e-1447.19Homeobox-leucine zipper protein HOX5 OS=Oryza sati... [more]
HOX5_ORYSI6.891e-1447.19Homeobox-leucine zipper protein HOX5 OS=Oryza sati... [more]
HOX23_ORYSJ6.891e-1444.90Homeobox-leucine zipper protein HOX23 OS=Oryza sat... [more]
HOX23_ORYSI6.891e-1444.90Homeobox-leucine zipper protein HOX23 OS=Oryza sat... [more]
HAT5_ARATH8.999e-1451.22Homeobox-leucine zipper protein HAT5 OS=Arabidopsi... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA76CA12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA76CA12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878161 ID=FC878161; Name=FC878161; organism=Citrus clementina; type=EST; length=875bp
ATTTCCTCTCTTTTTTTCTTTATTTTTCTCTCCTTCGCTTCAGAAGTCCC
GAGTGTTTCTCAAGACTCTCGAATCTCATATCTTAAATGGGTTTTGATGA
TGGGTGTAACACGGGCCTCGTGCTAGGGTTAGGTTTCGCATCAGCCATAG
AAACTACTCCAACAAATAAGGCGAACAATATAAATATTGTCAACCACCAG
CAGCTGCAGCTGCCTAAGGGTACATGTTTTGAGCCATCGCTTAGTCTGGG
CCTTCCTGGTGAGATTTACCCTGAGGCTGCTACTGCTACTACCAAAAAGA
ATAGTAATAGTATTGATGTGAACAAAGGTTATGAGGAATCCGCAGCAGCA
GGCGTCGCCGAATATCAAATACTAAATCGTCAGGCTTCTCCTCACAGTGC
TGTTTCTAATTCCTTCTCTAGCGGTAGAGTCGTCAAGAGGGAGAGAGACC
TTAGCAGTGAAGAGATAGAGGTTGAAAAAGTTATTTCCTCAAGAGCCAGT
GATGAAGATGAAGACGGTGTTAATGCCAGAAAGAAACTTAGGCTCACCAA
AGAACAATCTGCTCTTCTTGAGGAAAGCTTCAAACAGCATAGCACTCTCA
ATCCGAAGCAAAAGCAAGCTTTGGCAAGGCAACTAAACCTACGGCCAAGA
CAAGTTGAAGTATGGTTCCAGAATAGGAGAGCCAGGACAAAGCTCAAGCA
AACAGAAGTGGACTGTGAATTCTTGAAGAAATGCTGTGAAACACTAACTG
ATGAAAACAGAAGGCTGCATAANGAGCTACAAGAACTCAAAGCTCTGAAG
CTAGCTCAGCCTCTTTACATGCATATGCCGGCAGCTACCCTGACGATGTG
CCTTTCTTGTGAACGGATCGGCGGC
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