FC878161

Overview
NameFC878161
Unique NameFC878161
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length875
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878161 vs. ExPASy Swiss-Prot
Match: ATB13_ARATH (Homeobox-leucine zipper protein ATHB-13 OS=Arabidopsis thaliana GN=ATHB-13 PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 8.999e-14
Identity = 42/87 (48.28%), Postives = 55/87 (63.22%), Query Frame = 3
Query:  501 DEDEDGVN-ARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDEN 758
            D  +DG     KK RL  EQ   LE++F+  + L P++K  LAR L L+PRQ+ +WFQNRRAR K KQ E D + LK+  +TL  EN
Sbjct:   74 DYSDDGSQMGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDTLKRQFDTLKAEN 160          
BLAST of FC878161 vs. ExPASy Swiss-Prot
Match: ATB23_ARATH (Homeobox-leucine zipper protein ATHB-23 OS=Arabidopsis thaliana GN=ATHB-23 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.175e-13
Identity = 41/87 (47.13%), Postives = 53/87 (60.92%), Query Frame = 3
Query:  507 DEDGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRL 767
            D+      KK RL  EQ   LE+ F+  + L   +K  LAR L L+PRQ+ +WFQNRRAR+K KQ E D + LK+  E+L DEN  L
Sbjct:   63 DDGSKMGEKKRRLNMEQLKALEKDFELGNKLESDRKLELARALGLQPRQIAIWFQNRRARSKTKQLEKDYDMLKRQFESLRDENEVL 149          
BLAST of FC878161 vs. ExPASy Swiss-Prot
Match: HAT7_ARATH (Homeobox-leucine zipper protein HAT7 OS=Arabidopsis thaliana GN=HAT7 PE=2 SV=4)

HSP 1 Score: 76.6406 bits (187), Expect = 2.005e-13
Identity = 41/90 (45.56%), Postives = 55/90 (61.11%), Query Frame = 3
Query:  498 SDEDEDGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRL 767
            SD+    +   KK RL  EQ   LE+SF+  + L P++K  LA+ L L+PRQ+ +WFQNRRAR K KQ E D + LKK  + L  +N  L
Sbjct:  104 SDDGSHMMLGEKKKRLNLEQVRALEKSFELGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWKTKQLERDYDSLKKQFDVLKSDNDSL 193          
BLAST of FC878161 vs. ExPASy Swiss-Prot
Match: HOX21_ORYSJ (Homeobox-leucine zipper protein HOX21 OS=Oryza sativa subsp. japonica GN=HOX21 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.466e-13
Identity = 42/87 (48.28%), Postives = 55/87 (63.22%), Query Frame = 3
Query:  510 EDGVNA-RKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRL 767
            +DG  A  KK RL  EQ   LE++F+  + L P++K  LAR L L+PRQV +WFQNRRAR K KQ E D + LK+  + +  EN  L
Sbjct:  122 DDGSQAGEKKRRLNVEQVRTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDALKRQLDAVKAENDAL 208          
BLAST of FC878161 vs. ExPASy Swiss-Prot
Match: HOX21_ORYSI (Homeobox-leucine zipper protein HOX21 OS=Oryza sativa subsp. indica GN=HOX21 PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 4.466e-13
Identity = 42/87 (48.28%), Postives = 55/87 (63.22%), Query Frame = 3
Query:  510 EDGVNA-RKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRL 767
            +DG  A  KK RL  EQ   LE++F+  + L P++K  LAR L L+PRQV +WFQNRRAR K KQ E D + LK+  + +  EN  L
Sbjct:  116 DDGSQAGEKKRRLNVEQVRTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDALKRQLDAVKAENDAL 202          
BLAST of FC878161 vs. ExPASy Swiss-Prot
Match: ATB20_ARATH (Homeobox-leucine zipper protein ATHB-20 OS=Arabidopsis thaliana GN=ATHB-20 PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 5.833e-13
Identity = 40/90 (44.44%), Postives = 56/90 (62.22%), Query Frame = 3
Query:  498 SDEDEDGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRL 767
            SD+    +   KK RL  EQ   LE+SF+  + L P++K  LA+ L ++PRQ+ +WFQNRRAR K +Q E D + LKK  E+L  +N  L
Sbjct:   76 SDDGAHTMLGEKKKRLQLEQVKALEKSFELGNKLEPERKIQLAKALGMQPRQIAIWFQNRRARWKTRQLERDYDSLKKQFESLKSDNASL 165          
BLAST of FC878161 vs. ExPASy Swiss-Prot
Match: HOX20_ORYSJ (Homeobox-leucine zipper protein HOX20 OS=Oryza sativa subsp. japonica GN=HOX20 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.300e-12
Identity = 44/97 (45.36%), Postives = 55/97 (56.70%), Query Frame = 3
Query:  501 DEDED--------GVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRL 767
            D DED        G    KK RL+ EQ   LE SF+  + L P++K  LAR L L+PRQV VWFQNRRAR K KQ E D   L++  + L  ++  L
Sbjct:   25 DVDEDMAMCGGRGGGGGEKKRRLSVEQVRALERSFETENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLERDYAALRQSYDALRADHDAL 121          
BLAST of FC878161 vs. ExPASy Swiss-Prot
Match: HOX20_ORYSI (Homeobox-leucine zipper protein HOX20 OS=Oryza sativa subsp. indica GN=HOX20 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.300e-12
Identity = 44/97 (45.36%), Postives = 55/97 (56.70%), Query Frame = 3
Query:  501 DEDED--------GVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRL 767
            D DED        G    KK RL+ EQ   LE SF+  + L P++K  LAR L L+PRQV VWFQNRRAR K KQ E D   L++  + L  ++  L
Sbjct:   25 DVDEDMAMCGGRGGGGGEKKRRLSVEQVRALERSFETENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLERDYAALRQSYDALRADHDAL 121          
BLAST of FC878161 vs. ExPASy Swiss-Prot
Match: ATB54_ARATH (Homeobox-leucine zipper protein ATHB-54 OS=Arabidopsis thaliana GN=ATHB-54 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.217e-12
Identity = 38/66 (57.58%), Postives = 45/66 (68.18%), Query Frame = 3
Query:  531 KKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLK 728
            KK +LT  Q  LLEESF++   L P +K  LA +L L+P QV VWFQNRRAR K KQ E DC+ LK
Sbjct:   68 KKRKLTPIQLRLLEESFEEEKRLEPDRKLWLAEKLGLQPSQVAVWFQNRRARYKTKQLEHDCDSLK 133          
BLAST of FC878161 vs. ExPASy Swiss-Prot
Match: HOX4_ORYSJ (Homeobox-leucine zipper protein HOX4 OS=Oryza sativa subsp. japonica GN=HOX4 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.938e-12
Identity = 39/77 (50.65%), Postives = 48/77 (62.34%), Query Frame = 3
Query:  516 GVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETL 746
            G    KK RL+ EQ   LE SF+  + L P++K  LAR L L+PRQV VWFQNRRAR K KQ E D   L+   ++L
Sbjct:   46 GGGGEKKRRLSVEQVRALERSFEVENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLERDYAALRHSYDSL 122          
The following BLAST results are available for this feature:
BLAST of FC878161 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
ATB13_ARATH8.999e-1448.28Homeobox-leucine zipper protein ATHB-13 OS=Arabido... [more]
ATB23_ARATH1.175e-1347.13Homeobox-leucine zipper protein ATHB-23 OS=Arabido... [more]
HAT7_ARATH2.005e-1345.56Homeobox-leucine zipper protein HAT7 OS=Arabidopsi... [more]
HOX21_ORYSJ4.466e-1348.28Homeobox-leucine zipper protein HOX21 OS=Oryza sat... [more]
HOX21_ORYSI4.466e-1348.28Homeobox-leucine zipper protein HOX21 OS=Oryza sat... [more]
ATB20_ARATH5.833e-1344.44Homeobox-leucine zipper protein ATHB-20 OS=Arabido... [more]
HOX20_ORYSJ1.300e-1245.36Homeobox-leucine zipper protein HOX20 OS=Oryza sat... [more]
HOX20_ORYSI1.300e-1245.36Homeobox-leucine zipper protein HOX20 OS=Oryza sat... [more]
ATB54_ARATH2.217e-1257.58Homeobox-leucine zipper protein ATHB-54 OS=Arabido... [more]
HOX4_ORYSJ4.938e-1250.65Homeobox-leucine zipper protein HOX4 OS=Oryza sati... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA76CA12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA76CA12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878161 ID=FC878161; Name=FC878161; organism=Citrus clementina; type=EST; length=875bp
ATTTCCTCTCTTTTTTTCTTTATTTTTCTCTCCTTCGCTTCAGAAGTCCC
GAGTGTTTCTCAAGACTCTCGAATCTCATATCTTAAATGGGTTTTGATGA
TGGGTGTAACACGGGCCTCGTGCTAGGGTTAGGTTTCGCATCAGCCATAG
AAACTACTCCAACAAATAAGGCGAACAATATAAATATTGTCAACCACCAG
CAGCTGCAGCTGCCTAAGGGTACATGTTTTGAGCCATCGCTTAGTCTGGG
CCTTCCTGGTGAGATTTACCCTGAGGCTGCTACTGCTACTACCAAAAAGA
ATAGTAATAGTATTGATGTGAACAAAGGTTATGAGGAATCCGCAGCAGCA
GGCGTCGCCGAATATCAAATACTAAATCGTCAGGCTTCTCCTCACAGTGC
TGTTTCTAATTCCTTCTCTAGCGGTAGAGTCGTCAAGAGGGAGAGAGACC
TTAGCAGTGAAGAGATAGAGGTTGAAAAAGTTATTTCCTCAAGAGCCAGT
GATGAAGATGAAGACGGTGTTAATGCCAGAAAGAAACTTAGGCTCACCAA
AGAACAATCTGCTCTTCTTGAGGAAAGCTTCAAACAGCATAGCACTCTCA
ATCCGAAGCAAAAGCAAGCTTTGGCAAGGCAACTAAACCTACGGCCAAGA
CAAGTTGAAGTATGGTTCCAGAATAGGAGAGCCAGGACAAAGCTCAAGCA
AACAGAAGTGGACTGTGAATTCTTGAAGAAATGCTGTGAAACACTAACTG
ATGAAAACAGAAGGCTGCATAANGAGCTACAAGAACTCAAAGCTCTGAAG
CTAGCTCAGCCTCTTTACATGCATATGCCGGCAGCTACCCTGACGATGTG
CCTTTCTTGTGAACGGATCGGCGGC
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