FC878161

Overview
NameFC878161
Unique NameFC878161
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length875
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878161 vs. ExPASy Swiss-Prot
Match: HOX4_ORYSI (Homeobox-leucine zipper protein HOX4 OS=Oryza sativa subsp. indica GN=HOX4 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.938e-12
Identity = 39/77 (50.65%), Postives = 48/77 (62.34%), Query Frame = 3
Query:  516 GVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETL 746
            G    KK RL+ EQ   LE SF+  + L P++K  LAR L L+PRQV VWFQNRRAR K KQ E D   L+   ++L
Sbjct:   46 GGGGEKKRRLSVEQVRALERSFEVENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLERDYAALRHSYDSL 122          
BLAST of FC878161 vs. ExPASy Swiss-Prot
Match: HOX25_ORYSJ (Homeobox-leucine zipper protein HOX25 OS=Oryza sativa subsp. japonica GN=HOX25 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 4.938e-12
Identity = 40/83 (48.19%), Postives = 51/83 (61.45%), Query Frame = 3
Query:  501 DEDEDGVNARKKLRLTKEQSALLEESFKQHST-LNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETL 746
            DE      A +K RLT EQ   LE SF++    L P++K  LAR+L + PRQV VWFQNRRAR K KQ E+D + L+   + L
Sbjct:   72 DEQGSSSAAARKRRLTAEQVRALERSFEEEKRKLEPERKSELARRLGIAPRQVAVWFQNRRARWKTKQLELDFDRLRAAHDEL 154          
BLAST of FC878161 vs. ExPASy Swiss-Prot
Match: HOX25_ORYSI (Homeobox-leucine zipper protein HOX25 OS=Oryza sativa subsp. indica GN=HOX25 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.938e-12
Identity = 40/83 (48.19%), Postives = 51/83 (61.45%), Query Frame = 3
Query:  501 DEDEDGVNARKKLRLTKEQSALLEESFKQHST-LNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETL 746
            DE      A +K RLT EQ   LE SF++    L P++K  LAR+L + PRQV VWFQNRRAR K KQ E+D + L+   + L
Sbjct:   12 DEQGSSSAAARKRRLTAEQVRALERSFEEEKRKLEPERKSELARRLGIAPRQVAVWFQNRRARWKTKQLELDFDRLRAAHDEL 94          
BLAST of FC878161 vs. ExPASy Swiss-Prot
Match: ATB51_ARATH (Putative homeobox-leucine zipper protein ATHB-51 OS=Arabidopsis thaliana GN=ATHB-51 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.451e-11
Identity = 37/80 (46.25%), Postives = 52/80 (65.00%), Query Frame = 3
Query:  531 KKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLH 770
            KK RLT  Q A LE SF++   L+  +K  L+R+L L+PRQ+ VWFQNRRAR K KQ E   + L++  + ++ E + LH
Sbjct:   78 KKKRLTSGQLASLERSFQEEIKLDSDRKVKLSRELGLQPRQIAVWFQNRRARWKAKQLEQLYDSLRQEYDVVSREKQMLH 157          
BLAST of FC878161 vs. ExPASy Swiss-Prot
Match: HOX8_ORYSJ (Homeobox-leucine zipper protein HOX8 OS=Oryza sativa subsp. japonica GN=HOX8 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.180e-11
Identity = 36/66 (54.55%), Postives = 43/66 (65.15%), Query Frame = 3
Query:  531 KKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLK 728
            KK RL  EQ   LE SF+  + L+P++K  +AR L L PRQV VWFQNRRAR K KQ E D   L+
Sbjct:   65 KKRRLAAEQVRALERSFEADNKLDPERKARIARDLRLHPRQVAVWFQNRRARWKTKQIERDFAALR 130          
BLAST of FC878161 vs. ExPASy Swiss-Prot
Match: HOX8_ORYSI (Homeobox-leucine zipper protein HOX8 OS=Oryza sativa subsp. indica GN=HOX8 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.180e-11
Identity = 36/66 (54.55%), Postives = 43/66 (65.15%), Query Frame = 3
Query:  531 KKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLK 728
            KK RL  EQ   LE SF+  + L+P++K  +AR L L PRQV VWFQNRRAR K KQ E D   L+
Sbjct:   41 KKRRLAAEQVRALERSFEADNKLDPERKARIARDLRLHPRQVAVWFQNRRARWKTKQIERDFAALR 106          
BLAST of FC878161 vs. ExPASy Swiss-Prot
Match: HOX13_ORYSJ (Homeobox-leucine zipper protein HOX13 OS=Oryza sativa subsp. japonica GN=HOX13 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.460e-11
Identity = 41/93 (44.09%), Postives = 50/93 (53.76%), Query Frame = 3
Query:  531 KKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTE--------------VDCEFLKKCCETLTDENRRL 767
            KK RL  EQ   LE SF   + L+P +K  +AR L L+PRQV VWFQNRRAR K KQ E               DC+ L++  + L  E R L
Sbjct:   72 KKRRLALEQVRALERSFDTDNKLDPDRKARIARDLGLQPRQVAVWFQNRRARWKTKQLERDFAALRARHDALRADCDALRRDKDALAAEIREL 164          
BLAST of FC878161 vs. ExPASy Swiss-Prot
Match: ATHB5_ARATH (Homeobox-leucine zipper protein ATHB-5 OS=Arabidopsis thaliana GN=ATHB-5 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.460e-11
Identity = 37/74 (50.00%), Postives = 48/74 (64.86%), Query Frame = 3
Query:  525 ARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETL 746
            A KK RL  EQ   LE++F+  + L P++K  LA++L L+PRQV +WFQNRRAR K KQ E D   LK   + L
Sbjct:   70 AEKKRRLGVEQVKALEKNFEIDNKLEPERKVKLAQELGLQPRQVAIWFQNRRARWKTKQLERDYGVLKSNFDAL 143          
BLAST of FC878161 vs. ExPASy Swiss-Prot
Match: HOX13_ORYSI (Homeobox-leucine zipper protein HOX13 OS=Oryza sativa subsp. indica GN=HOX13 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 7.131e-11
Identity = 41/94 (43.62%), Postives = 50/94 (53.19%), Query Frame = 3
Query:  531 KKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTE---------------VDCEFLKKCCETLTDENRRL 767
            KK RL  EQ   LE SF   + L+P +K  +AR L L+PRQV VWFQNRRAR K KQ E                DC+ L++  + L  E R L
Sbjct:   72 KKRRLALEQVRALERSFDTDNKLDPDRKARIARDLGLQPRQVAVWFQNRRARWKTKQLERDFAALRAQHNDALRADCDALRRDKDALAAEIREL 165          
BLAST of FC878161 vs. ExPASy Swiss-Prot
Match: ATB16_ARATH (Homeobox-leucine zipper protein ATHB-16 OS=Arabidopsis thaliana GN=ATHB-16 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 7.131e-11
Identity = 35/68 (51.47%), Postives = 46/68 (67.65%), Query Frame = 3
Query:  525 ARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLK 728
            + KK RL  +Q   LE++F+  + L P++K  LA++L L+PRQV VWFQNRRAR K KQ E D   LK
Sbjct:   57 SEKKRRLKVDQVKALEKNFELENKLEPERKTKLAQELGLQPRQVAVWFQNRRARWKTKQLEKDYGVLK 124          
The following BLAST results are available for this feature:
BLAST of FC878161 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
HOX4_ORYSI4.938e-1250.65Homeobox-leucine zipper protein HOX4 OS=Oryza sati... [more]
HOX25_ORYSJ4.938e-1248.19Homeobox-leucine zipper protein HOX25 OS=Oryza sat... [more]
HOX25_ORYSI4.938e-1248.19Homeobox-leucine zipper protein HOX25 OS=Oryza sat... [more]
ATB51_ARATH2.451e-1146.25Putative homeobox-leucine zipper protein ATHB-51 O... [more]
HOX8_ORYSJ4.180e-1154.55Homeobox-leucine zipper protein HOX8 OS=Oryza sati... [more]
HOX8_ORYSI4.180e-1154.55Homeobox-leucine zipper protein HOX8 OS=Oryza sati... [more]
HOX13_ORYSJ5.460e-1144.09Homeobox-leucine zipper protein HOX13 OS=Oryza sat... [more]
ATHB5_ARATH5.460e-1150.00Homeobox-leucine zipper protein ATHB-5 OS=Arabidop... [more]
HOX13_ORYSI7.131e-1143.62Homeobox-leucine zipper protein HOX13 OS=Oryza sat... [more]
ATB16_ARATH7.131e-1151.47Homeobox-leucine zipper protein ATHB-16 OS=Arabido... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA76CA12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA76CA12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878161 ID=FC878161; Name=FC878161; organism=Citrus clementina; type=EST; length=875bp
ATTTCCTCTCTTTTTTTCTTTATTTTTCTCTCCTTCGCTTCAGAAGTCCC
GAGTGTTTCTCAAGACTCTCGAATCTCATATCTTAAATGGGTTTTGATGA
TGGGTGTAACACGGGCCTCGTGCTAGGGTTAGGTTTCGCATCAGCCATAG
AAACTACTCCAACAAATAAGGCGAACAATATAAATATTGTCAACCACCAG
CAGCTGCAGCTGCCTAAGGGTACATGTTTTGAGCCATCGCTTAGTCTGGG
CCTTCCTGGTGAGATTTACCCTGAGGCTGCTACTGCTACTACCAAAAAGA
ATAGTAATAGTATTGATGTGAACAAAGGTTATGAGGAATCCGCAGCAGCA
GGCGTCGCCGAATATCAAATACTAAATCGTCAGGCTTCTCCTCACAGTGC
TGTTTCTAATTCCTTCTCTAGCGGTAGAGTCGTCAAGAGGGAGAGAGACC
TTAGCAGTGAAGAGATAGAGGTTGAAAAAGTTATTTCCTCAAGAGCCAGT
GATGAAGATGAAGACGGTGTTAATGCCAGAAAGAAACTTAGGCTCACCAA
AGAACAATCTGCTCTTCTTGAGGAAAGCTTCAAACAGCATAGCACTCTCA
ATCCGAAGCAAAAGCAAGCTTTGGCAAGGCAACTAAACCTACGGCCAAGA
CAAGTTGAAGTATGGTTCCAGAATAGGAGAGCCAGGACAAAGCTCAAGCA
AACAGAAGTGGACTGTGAATTCTTGAAGAAATGCTGTGAAACACTAACTG
ATGAAAACAGAAGGCTGCATAANGAGCTACAAGAACTCAAAGCTCTGAAG
CTAGCTCAGCCTCTTTACATGCATATGCCGGCAGCTACCCTGACGATGTG
CCTTTCTTGTGAACGGATCGGCGGC
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