FC878164

Overview
NameFC878164
Unique NameFC878164
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length922
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878164 vs. ExPASy Swiss-Prot
Match: SYTC_ARATH (Probable threonyl-tRNA synthetase, cytoplasmic OS=Arabidopsis thaliana GN=At1g17960 PE=2 SV=2)

HSP 1 Score: 241.891 bits (616), Expect = 3.875e-63
Identity = 115/169 (68.05%), Postives = 139/169 (82.25%), Query Frame = 3
Query:   96 MPSPNQVKDEEYLNKVIPKRISLFQSLQSEQQARLQSLPHDPIKITL-PDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFDSDEGRDTFWHSSAHILGQAIEQQYGCKLCIGPCTTRGEGFYYDA-FYGDLGLNPDHFKSIDSE 596
            M + +  KDE YL+ VIPKRI LF+ +Q+EQ  +LQS PHDPIKITL PDG  KEG+RWETSPMDIA  ISK LA +AL+S VN VLWDM RPLE DC L++F FDSD+GR+TFWHSSAHILGQA+EQ+YGCKLCIGPC  R EGFYYD+ +YG+LGLN +HF +I+++
Sbjct:    1 MANNHHPKDEAYLSSVIPKRIRLFEEIQAEQLEQLQSRPHDPIKITLLPDGIEKEGRRWETSPMDIAVQISKGLAKSALVSSVNHVLWDMNRPLEGDCSLEIFGFDSDQGRNTFWHSSAHILGQALEQEYGCKLCIGPCEPRDEGFYYDSLYYGELGLNDNHFPNIEAK 169          
BLAST of FC878164 vs. ExPASy Swiss-Prot
Match: SYTC2_HUMAN (Probable threonyl-tRNA synthetase 2, cytoplasmic OS=Homo sapiens GN=TARSL2 PE=1 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 2.512e-62
Identity = 121/295 (41.02%), Postives = 176/295 (59.66%), Query Frame = 3
Query:   93 AMPSPNQVKDEEYLNK----------------VIPKRISLFQSLQSEQQARL-----QSLPHDPIKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFDSDEGRDTFWHSSAHILGQAIEQQYGCKLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAAKEKQPFERIEVTRDQALEMFSDNNFKVEIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYGISYPDKKTVKEY 914
            A P P+Q +D++   K                 I +R+ LF+ L+ + Q  L     +    + I + + DG   +G+ W+T+P  +A  IS+ LA + +I+ VNG LWD+ RPLE D  L+L TFD++E +  +WHSSAHILG+A+E  YG  LC GP    G  FYYD F  D  ++     ++++      KEKQPFER+EV+++  LEMF  N FK  I+N+     T TVYRCGPL+DLC+GPH+ +T  +K     K SS YW GN + E+LQR+YGIS+PD K ++++
Sbjct:   98 AQPPPSQSQDKDMKKKKMKESEADSEVKHQPIFIKERLKLFEILKKDHQLLLAIYGKKGDTSNIITVRVADGQTVQGEVWKTTPYQVAAEISQELAESTVIAKVNGELWDLDRPLEGDSSLELLTFDNEEAQAVYWHSSAHILGEAMELYYGGHLCYGPPIENG--FYYDMFIEDRAVSSTELSALENICKAIIKEKQPFERLEVSKEILLEMFKYNKFKCRILNEKVNTATTTVYRCGPLIDLCKGPHVRHTGKIKTIKIFKNSSTYWEGNPEMETLQRIYGISFPDNKMMRDW 390          
BLAST of FC878164 vs. ExPASy Swiss-Prot
Match: SYTC_YEAST (Threonyl-tRNA synthetase, cytoplasmic OS=Saccharomyces cerevisiae GN=THS1 PE=1 SV=2)

HSP 1 Score: 234.572 bits (597), Expect = 6.186e-61
Identity = 121/274 (44.16%), Postives = 172/274 (62.77%), Query Frame = 3
Query:  144 IPKRISLFQSLQSEQQARLQSLPHDPIKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCD----LKLFTFDSDEGRDTFWHSSAHILGQAIEQQYGCKLCIGPCTTRGEGFYYDA----FYGDLGLNPDH------FKSIDSEADKAAKEKQPFERIEVTRDQALEMFSDNNFKVEII-NDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYGISYPDKKTVKEYIE 920
            I +RI +F  LQ E   ++ S+P  P+KI L DG+VKE   WET+PMDIA+GISKSLA    IS VNG LWD+ RP E + +    L+L  F+SDEG+  FWHSSAH+LG++ E   G  +C+GP T   +GF+Y+        D+  +P+       F  ++  A    K+KQ FER+ ++++  L+MF  + +K  ++   +P     TVYRCG L+DLC GPHIP+T  +K F  LK SS Y+ G+   +SLQRVYGIS+PDKK +  +++
Sbjct:   49 IEERIEMFDRLQKEYNDKVASMPRVPLKIVLKDGAVKEATSWETTPMDIAKGISKSLADRLCISKVNGQLWDLDRPFEGEANEEIKLELLDFESDEGKKVFWHSSAHVLGESCECHLGAHICLGPPT--DDGFFYEMAVRDSMKDISESPERTVSQADFPGLEGVAKNVIKQKQKFERLVMSKEDLLKMFHYSKYKTYLVQTKVPDGGATTVYRCGKLIDLCVGPHIPHTGRIKAFKLLKNSSCYFLGDATNDSLQRVYGISFPDKKLMDAHLK 320          
BLAST of FC878164 vs. ExPASy Swiss-Prot
Match: SYTC2_BOVIN (Probable threonyl-tRNA synthetase 2, cytoplasmic OS=Bos taurus GN=TARSL2 PE=2 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 7.826e-56
Identity = 111/294 (37.76%), Postives = 170/294 (57.82%), Query Frame = 3
Query:   93 AMPSPNQVKDEEYLNKVIP------------KRISLFQSLQSEQQARL-----QSLPHDPIKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFDSDEGRDTFWHSSAHILGQAIEQQYGCKLCIGPCTTRGEG-FYYDAFYGDLGLNPDHFKSIDSEADKAAKEKQPFERIEVTRDQALEMFSDNNFKVEIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYGISYPDKKTVKEYIE 920
            A P P+Q  +E+   ++ P            +R+  F+ L+ + Q  L     +    + I + + DG   +G+ W+T+P  +A  IS+ LA   +++ VNG LWD+ RPLE D  ++L TF+ +E R  +WHSSAH+LG+A+E  YG  LC   C+  G+G F+YD +  D  ++      ++S      KE+QPFER+EV+    L++F  N FK  I+ +  A  T TVYRCGPLV+LC+GPH+ +T  +K     K S AYW  N + E LQRVYG+S+PD++ +  + E
Sbjct:  100 AQPPPSQSLEEDVKKEIDPDNEVKNPPNFMKERLKFFEILKKDHQLLLAIYEKKGDSSNVITVRVADGRTVKGEAWKTTPYQVAAEISQELAETTVVAKVNGELWDLDRPLEGDATVELLTFEDEEARAVYWHSSAHVLGEALELHYGGLLC---CSPPGDGSFHYDVYLEDRAVSSAELPVLESMCQAIIKEQQPFERLEVSTKVLLDLFKYNKFKCRILKEKVATPTTTVYRCGPLVELCKGPHVRHTGTIKVIKIFKNSLAYWADNPEMEMLQRVYGVSFPDEQRMAAWEE 390          
BLAST of FC878164 vs. ExPASy Swiss-Prot
Match: SYTM_RAT (Threonyl-tRNA synthetase, mitochondrial OS=Rattus norvegicus GN=Tars2 PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 2.605e-51
Identity = 107/261 (41.00%), Postives = 151/261 (57.85%), Query Frame = 3
Query:  144 IPKRISLFQSLQSEQQARLQSLPHDP---IKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFDSDEGRDTFWHSSAHILGQAIEQQYGCKLCIGPCTTRGEGFYYDAFYG-DLGLNPDHFKSIDSEADKAAKEKQPFERIEVTRDQALEMFSDNNFKVEIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYGISYPDKKTVKEY 914
            + +R  LF+ L + Q  RL S+       IKI+LP+G   +   W T+P  +AQ IS +LA  A+ + VNG L+D+ RPLE DC L+  TFDS EG+  FW SSAH+LG A EQ  G  LC GP T    GFY D F G +  +      +++    +     QPF R+E +R Q  ++F DN+FK+ +I +     T TVY CG  VDLC+GPH+ +T  +     L  SSA WR ++  E+LQRV GIS+P  + ++ +
Sbjct:   37 LAERFGLFEELWTAQVKRLASMTQKKARTIKISLPEGQKVDAVAWNTTPYQLAQQISSTLADTAVAAEVNGELYDLDRPLETDCHLRFLTFDSPEGKAVFWRSSAHVLGAAAEQHLGAVLCRGPSTE--SGFYLDFFLGKERTVRSTELPTLERICQEIITAAQPFRRLEASRGQLRQLFKDNHFKLHVIEEKVTGTTATVYGCGMSVDLCQGPHLRHTGQIGALKLLTNSSALWRSSEAPETLQRVSGISFPKAELLRNW 295          
BLAST of FC878164 vs. ExPASy Swiss-Prot
Match: SYTM_MOUSE (Threonyl-tRNA synthetase, mitochondrial OS=Mus musculus GN=Tars2 PE=2 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 3.403e-51
Identity = 108/261 (41.38%), Postives = 150/261 (57.47%), Query Frame = 3
Query:  144 IPKRISLFQSLQSEQQARLQSLPHDP---IKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFDSDEGRDTFWHSSAHILGQAIEQQYGCKLCIGPCTTRGEGFYYDAFYG-DLGLNPDHFKSIDSEADKAAKEKQPFERIEVTRDQALEMFSDNNFKVEIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYGISYPDKKTVKEY 914
            + +R  LF+ L +    +L S+       IKI+LP+G   +   W T+P  +A  IS +LA  A+ + VNG L+D+ RPLE DC L+  TFDS EG+  FWHSSAH+LG A EQQ G  LC GP T    GFY+D F G +  +       ++    +     QPF R+E +RDQ  ++F DN+FK+ +I +     T TVY CG  VDLCRGPH+ +T  +     L  SSA WR     E+LQRV GIS+P  + ++ +
Sbjct:   37 LAERFGLFEELWTAHVKKLASMTQKKARAIKISLPEGQKVDAVAWNTTPYQLAHQISVTLADTAVAAEVNGELYDLDRPLETDCHLRFLTFDSPEGKAVFWHSSAHVLGAAAEQQLGAVLCRGPSTE--SGFYHDFFLGKERTVRSAELPILERICQELIAAAQPFRRLEASRDQLRQLFKDNHFKLHLIEEKVTGPTATVYGCGMSVDLCRGPHLRHTGQIGALKLLTNSSALWRSLGAPETLQRVSGISFPKVELLRNW 295          
BLAST of FC878164 vs. ExPASy Swiss-Prot
Match: SYTM_HUMAN (Threonyl-tRNA synthetase, mitochondrial OS=Homo sapiens GN=TARS2 PE=1 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 2.205e-50
Identity = 106/259 (40.93%), Postives = 150/259 (57.92%), Query Frame = 3
Query:  144 IPKRISLFQSLQSEQQARLQSLPHDP---IKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFDSDEGRDTFWHSSAHILGQAIEQQYGCKLCIGPCTTRGEGFYYDAFYG-DLGLNPDHFKSIDSEADKAAKEKQPFERIEVTRDQALEMFSDNNFKVEIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYGISYPDKKTVK 908
            + +R+ LF+ L + Q  RL S+       IKI+LP G   +   W T+P  +A+ IS +LA  A+ + VNG  +D+ RPLE D DL+  TFDS EG+  FWHSS H+LG A EQ  G  LC GP T    GFY+D F G +  +       ++    +     +PF R+E +RDQ  ++F DN FK+ +I +     T TVY CG LVDLC+GPH+ +T  + G   L  SS+ WR +   E+LQRV GIS+P  + ++
Sbjct:   32 LAERLGLFEELWAAQVKRLASMAQKEPRTIKISLPGGQKIDAVAWNTTPYQLARQISSTLADTAVAAQVNGEPYDLERPLETDSDLRFLTFDSPEGKAVFWHSSTHVLGAAAEQFLGAVLCRGPSTE--YGFYHDFFLGKERTIRGSELPVLERICQELTAAARPFRRLEASRDQLRQLFKDNPFKLHLIEEKVTGPTATVYGCGTLVDLCQGPHLRHTGQIGGLKLLSNSSSLWRSSGAPETLQRVSGISFPTTELLR 288          
BLAST of FC878164 vs. ExPASy Swiss-Prot
Match: SYT_CYTH3 (Threonyl-tRNA synthetase OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=thrS PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 6.417e-50
Identity = 98/235 (41.70%), Postives = 154/235 (65.53%), Query Frame = 3
Query:  222 IKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFDSDEGRDTFWHSSAHILGQAIEQQY-GCKLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAAKEKQPFERIEVTRDQALEMFSDNN--FKVEIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYGISYPDKKTVKEYI 917
            IKITLPDGS++E ++  TS M IA  IS+ LA N L + VNG +WD +R + +D  ++L T++  EG+ TFWHSSAH+L +A+E  Y G K  IGP    G  FYYD  +GD   + D F++I+ +  + AK+K  + R E+++  A+  F+D    +K++++  L +D +IT Y+ G   DLCRGPHIP+T F+K    +  + AYWRG++  + L R+YG+++P ++ +K+Y+
Sbjct:    2 IKITLPDGSIREYEKGITS-MGIALSISEGLARNVLAAKVNGEIWDASRAITSDSTVQLLTWNDTEGKSTFWHSSAHLLAEALEALYPGTKFGIGPAIETG--FYYDVDFGDRAFSQDDFENIEKKVLELAKQKNAYIRKEISKKDAVAYFTDKQDPYKLDLLEGL-SDGSITFYKQGAFTDLCRGPHIPDTGFIKAVKLMSVAGAYWRGDEKSKQLTRIYGVTFPKQQELKDYL 232          
BLAST of FC878164 vs. ExPASy Swiss-Prot
Match: SYT_PARD8 (Threonyl-tRNA synthetase OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=thrS PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 9.266e-49
Identity = 98/235 (41.70%), Postives = 149/235 (63.40%), Query Frame = 3
Query:  222 IKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFDSDEGRDTFWHSSAHILGQAIEQQY-GCKLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAAKEKQPFERIEVTRDQALEMFSDNN--FKVEIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYGISYPDKKTVKEYI 917
            IKIT PD SV+E  +  T+ M IA+ IS  LA   L + VNG +WD++RP+  D  +KL  ++ +EG+  FWHSSAH++ +A+++ Y G K  IGP    G  FYYD   G+  +    F +I+++  +   +K+  +R ++T+  A++MF D    +K E+I++L  D TIT Y  G   DLCRGPH+PNTS++K    L  + AYWRG++ R+ L R+YGI++P KK + EY+
Sbjct:    2 IKITFPDNSVREYAKGTTA-MQIAESISSRLAQEVLAASVNGEVWDLSRPINDDATVKLLKWEDEEGKHAFWHSSAHLMAEALQELYPGIKFGIGPAIENG--FYYDVDPGEAVIKEGDFAAIEAKMLELVAKKEEIKRQDITKADAMKMFGDRGEEYKTELISELE-DGTITTYTQGSFTDLCRGPHLPNTSYLKAVKILSVAGAYWRGDEKRKQLVRLYGITFPKKKMLDEYL 232          
BLAST of FC878164 vs. ExPASy Swiss-Prot
Match: SYT_PORG3 (Threonyl-tRNA synthetase OS=Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257) GN=thrS PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 4.599e-48
Identity = 102/237 (43.04%), Postives = 144/237 (60.76%), Query Frame = 3
Query:  222 IKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFDSDEGRDTFWHSSAHILGQAIEQQY-GCKLCIGPCTTRGEGFYYDAFYGD-LGLNPDHFKSIDSEADKAAKEKQPFERIEVTRDQALEMFSDNN--FKVEIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYGISYPDKKTVKEYIE 920
            IKIT PDG+ +E +   T   DIA  IS  L  + L + VNG +WD+ RP+  D ++KLF +D  EG+  FWHSSAH++ +A+E+ Y G K  IGP    G  FYYD   G+ + +      +I+      A  K+   R ++ +  AL MF D +  +KVE+I++L AD TIT Y  G   DLCRGPH+PNT ++K    L  + AYWRG++ R+ L R+YGIS+P KK + EY+E
Sbjct:    2 IKITFPDGNFREYEAGITG-WDIAGSISPRLQQDVLAAGVNGQVWDLHRPINEDAEVKLFKWDDAEGKHAFWHSSAHLMAEALEELYPGIKFGIGPAIENG--FYYDVDPGEGISIKDADLPAIEKRMQDLAARKETIIRRDIAKADALRMFGDKDDQYKVELISEL-ADGTITTYTQGGFTDLCRGPHLPNTGYIKAIKLLSVAGAYWRGDEKRKQLTRIYGISFPKKKMLDEYLE 234          
The following BLAST results are available for this feature:
BLAST of FC878164 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SYTC_ARATH3.875e-6368.05Probable threonyl-tRNA synthetase, cytoplasmic OS=... [more]
SYTC2_HUMAN2.512e-6241.02Probable threonyl-tRNA synthetase 2, cytoplasmic O... [more]
SYTC_YEAST6.186e-6144.16Threonyl-tRNA synthetase, cytoplasmic OS=Saccharom... [more]
SYTC2_BOVIN7.826e-5637.76Probable threonyl-tRNA synthetase 2, cytoplasmic O... [more]
SYTM_RAT2.605e-5141.00Threonyl-tRNA synthetase, mitochondrial OS=Rattus ... [more]
SYTM_MOUSE3.403e-5141.38Threonyl-tRNA synthetase, mitochondrial OS=Mus mus... [more]
SYTM_HUMAN2.205e-5040.93Threonyl-tRNA synthetase, mitochondrial OS=Homo sa... [more]
SYT_CYTH36.417e-5041.70Threonyl-tRNA synthetase OS=Cytophaga hutchinsonii... [more]
SYT_PARD89.266e-4941.70Threonyl-tRNA synthetase OS=Parabacteroides distas... [more]
SYT_PORG34.599e-4843.04Threonyl-tRNA synthetase OS=Porphyromonas gingival... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA83DG03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA83DG03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878164 ID=FC878164; Name=FC878164; organism=Citrus clementina; type=EST; length=922bp
CGCTTACATTCAACTGCCGCCGTATTTCCTCTCAACTCTTTCGCTGTCAA
AACACTAAACCCTCCTCCGCCACCAATCTCCGCCGCATCCGCGCGATGCC
GTCTCCAAATCAAGTCAAAGACGAAGAGTATCTCAACAAAGTCATTCCCA
AACGTATCAGTCTCTTCCAGTCTCTTCAGTCCGAACAACAAGCCCGCCTC
CAGTCTCTCCCCCATGATCCCATCAAGATTACTCTGCCCGATGGGTCTGT
GAAAGAAGGCAAGAGATGGGAGACTTCGCCCATGGATATTGCTCAGGGAA
TTTCGAAGAGTTTGGCGGCCAATGCTTTGATTTCCATGGTGAATGGTGTT
TTGTGGGACATGACTAGGCCCTTAGAGGCCGATTGTGACCTCAAGTTATT
CACTTTTGATTCTGACGAAGGCCGTGATACTTTCTGGCACTCTAGTGCCC
ACATTCTAGGACAGGCAATTGAGCAGCAGTATGGTTGTAAGTTGTGTATT
GGTCCATGCACAACAAGAGGAGAGGGTTTCTATTATGATGCATTTTATGG
GGACTTGGGCTTGAATCCAGATCACTTCAAGTCAATTGATTCAGAAGCAG
ATAAAGCTGCCAAGGAAAAGCAGCCTTTTGAGCGCATTGAAGTTACAAGA
GATCAGGCTCTTGAGATGTTTTCCGACAACAATTTTAAGGTTGAAATAAT
CAATGATCTGCCTGCTGACAAAACTATCACAGTGTACAGATGTGGTCCCT
TGGTTGATTTGTGTCGTGGACCTCATATACCAAATACATCATTTGTGAAA
GGATTTGGGTGTTTGAAGGCTTCATCGGCTTATTGGAGGGGGAACAAGGA
TCGTGAGAGTTTACAGAGAGTTTATGGGATATCATACCCTGATAAAAAAA
CGGTGAAGGAATATATTGAACT
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