FC878164

Overview
NameFC878164
Unique NameFC878164
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length922
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878164 vs. ExPASy Swiss-Prot
Match: SYT_THELT (Threonyl-tRNA synthetase OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) GN=thrS PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.391e-28
Identity = 74/239 (30.96%), Postives = 129/239 (53.97%), Query Frame = 3
Query:  219 PIKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFDSDEGRDTFWHSSAHILGQAIEQQYGCK---LCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAAKEKQPFERIEVTRDQALEMFS--DNNFKVEIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYGISYPDKKTVKEYIE 920
            PIK+ + +    +G+     P+ I + I        + ++ NG L D+   +++D +++      +   + + H+ +HIL QA+   YG K   L IGP    G  FYYD    +  +  +    I+ E  K  ++  P ERIE+++D A+   +  D  +KVE++ ++  D  +T+++ G  VDLCRGPH+P+T  VK F  L  S AYW+G++    LQRVYG ++  ++ +K Y++
Sbjct:    2 PIKVKIKN----DGEFISEKPVQIREIIRSD---EVIAAVFNGKLIDLRSTIDSDGEVEFVDLFHELAPEVYRHTMSHILAQAVMNVYGKKNVRLGIGPAIENG--FYYDFEILNGKITEEDLSRIEEEMKKIIEQNIPVERIEMSKDDAISFMTEKDQPYKVELLKEIQ-DNKVTLFKQGDFVDLCRGPHMPSTGMVKHFKLLSVSGAYWKGDEKNPMLQRVYGTAFLRQEELKNYLD 230          
BLAST of FC878164 vs. ExPASy Swiss-Prot
Match: SYT_TREDE (Threonyl-tRNA synthetase OS=Treponema denticola GN=thrS PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.817e-28
Identity = 65/166 (39.16%), Postives = 101/166 (60.84%), Query Frame = 3
Query:  429 TFWHSSAHILGQAIEQQY-GCKLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAAKEKQPFERIEVTRDQALEMFSDNNFKVEIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFV--KGFGCLKASSAYWRGNKDRESLQRVYGISYPDKKTVKEYI 917
            T  HS+AH++ +A+   + G K+ IGP    G  FYYD F     +N D   +I+ E  K    +  FE+  ++R++ALEMF D  FK+E+I  LPAD+ I++Y+ G   DLCRGPH+ + + +  +GF  +K + AYWRG++ R  L R+YG ++     +KEY+
Sbjct:   13 TLRHSTAHVMAEAVVNLFPGTKVAIGPAIDYG--FYYD-FELPRPINNDDLPAIEKEMRKILTTRSNFEKEVISREKALEMFKDQPFKIELIKGLPADEEISIYKSGEFTDLCRGPHVCSMADINAQGFKLMKIAGAYWRGDETRPMLTRIYGTAWEKPNDLKEYL 175          
BLAST of FC878164 vs. ExPASy Swiss-Prot
Match: SYT_SULSY (Threonyl-tRNA synthetase OS=Sulfurihydrogenibium sp. (strain YO3AOP1) GN=thrS PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.817e-28
Identity = 67/199 (33.67%), Postives = 112/199 (56.28%), Query Frame = 3
Query:  339 VNGVLWDMTRPLEADCDLKLFTFDSDEGRDTFWHSSAHILGQAIEQQYGCK---LCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAAKEKQPFERIEVTRDQALEMFSDNN--FKVEII-NDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYGISYPDKKTVKEYI 917
            +NG + D+  P+    +LK    +  E  +   HS AHI+ QA+++ YG +   L IGP T  G  FYYD       L  +    I+ +  +  K+    ER E+ R++A++ F +    +K++II +++P  + I++Y+ G  VDLCRGPH+P+T     F  +  S AYWRG +    LQR+YG+++  +K +K+Y+
Sbjct:   40 LNGEIIDIHTPINQSGNLKFLKKEDKESLEILRHSLAHIMAQALKEIYGDENVHLGIGPTTEHG--FYYDVEIEGKSLTDEDLPQIEEKMKEIIKKGYQIERFELPREEAIKFFENKKEIYKIDIIKHNIPEGEPISLYKQGDFVDLCRGPHLPSTDKAGAFKLISVSGAYWRGKETNPMLQRIYGVAFWSEKELKDYL 236          
BLAST of FC878164 vs. ExPASy Swiss-Prot
Match: SYT_ERWT9 (Threonyl-tRNA synthetase OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=thrS PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.817e-28
Identity = 80/234 (34.19%), Postives = 119/234 (50.85%), Query Frame = 3
Query:  228 ITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFDSDEGRDTFWHSSAHILGQAIEQQY-GCKLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAAKEKQPFERIEVTRDQALEMFS--DNNFKVEIIND-LPADKTITVYRCGPLVDLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYGISYPDKKTVKEYI 917
            ITLPDGS +       S MDIA  I   LA   +   VNG L D   P+  D  + + T   + G +   HS AH+LG AI+Q +   K+ IGP    G  FYYD    D  L  +  + ++    + A+      + +V+  +A + F+    N+K  I+++ +  D    +Y     VD+CRGPH+PN  F   F   K S AYWRG+ + + LQR+YG ++ DKK +  Y+
Sbjct:    4 ITLPDGSQRSFDH-AVSVMDIAMDIGPGLAKACIAGRVNGELVDAVDPIVDDASVAIITAKDEAGLEIIRHSCAHLLGHAIKQLWPDTKMAIGPVIDNG--FYYDVDL-DRTLTQEDIELLEKRMHQLAETNYDVIKKKVSWQEARDAFAARGENYKTTILDENISHDDRPGLYHHQEYVDMCRGPHVPNMRFCHHFKLQKISGAYWRGDSNNKMLQRIYGTAWADKKQLAAYL 233          
BLAST of FC878164 vs. ExPASy Swiss-Prot
Match: SYT_COLP3 (Threonyl-tRNA synthetase OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=thrS PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.817e-28
Identity = 78/234 (33.33%), Postives = 121/234 (51.71%), Query Frame = 3
Query:  228 ITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFDSDEGRDTFWHSSAHILGQAIEQQY-GCKLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAAKEKQPFERIEVTRDQALEMFSDNN--FKVEIIND-LPADKTITVYRCGPLVDLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYGISYPDKKTVKEYI 917
            ITLPDGS +  ++   S MD+A  I   LA   +   ++G L D    +  D  L+L T    EG +   HS AH+LG AI+Q Y   K+ IGP  T   GFYYD    D  ++ D    ++    + A+      +   +   A + F++    +K+ I+++ +    T  +Y     +D+CRGPH+P+      F  +K + AYWRG+ D + LQR+YG ++ DKK +K YI
Sbjct:    4 ITLPDGSQRSFEQ-AVSVMDVALDIGPGLAKATIAGRIDGNLVDACELITQDASLQLITSKDSEGLEIIRHSCAHLLGHAIKQLYPNVKMAIGP--TIENGFYYDIDL-DESISEDDLVKLEKRMTELARTGYEVVKKTGSWQDAYDAFTERGETYKLAILDENIEKTDTPALYHHQEYIDMCRGPHVPSMRHCHHFKLMKVAGAYWRGDSDNKMLQRIYGTAWADKKQLKAYI 233          
BLAST of FC878164 vs. ExPASy Swiss-Prot
Match: SYT_PECCP (Threonyl-tRNA synthetase OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=thrS PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 2.373e-28
Identity = 77/235 (32.77%), Postives = 120/235 (51.06%), Query Frame = 3
Query:  228 ITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFDSDEGRDTFWHSSAHILGQAIEQQY-GCKLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAAKEKQPFERIEVTRDQALEMFS--DNNFKVEIIND-LPADKTITVYRCGPLVDLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYGISYPDKKTVKEYIE 920
            ITLPDGS +       SP+D+A  I   LA   +   VNG L D +  ++ D  L + T   + G +   HS AH+LG AI+Q +   K+ IGP    G  FYYD    D  L  +  + ++    + A       + +V+  +A + F+     +K+ I+++ +  D    +Y     +D+CRGPH+PN  F   F   K S AYWRG+   + LQR+YG ++ DKK +  Y++
Sbjct:    4 ITLPDGSQRHYDH-AVSPLDVALDIGPGLAKACIAGRVNGELVDASDKIDTDAQLAIITAKDEAGLEIIRHSCAHLLGHAIKQLWPDTKMAIGPVIDNG--FYYDVDI-DRTLTQEDIELLEKRMHELADTDYDVIKKKVSWQEARDAFAARGETYKMAILDENISRDDRPGLYHHEEYIDMCRGPHVPNMRFCHHFKLQKTSGAYWRGDSKNKMLQRIYGTAWADKKQLASYLQ 234          
BLAST of FC878164 vs. ExPASy Swiss-Prot
Match: SYT_ERWCT (Threonyl-tRNA synthetase OS=Erwinia carotovora subsp. atroseptica GN=thrS PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 2.373e-28
Identity = 77/235 (32.77%), Postives = 120/235 (51.06%), Query Frame = 3
Query:  228 ITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFDSDEGRDTFWHSSAHILGQAIEQQY-GCKLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAAKEKQPFERIEVTRDQALEMFS--DNNFKVEIIND-LPADKTITVYRCGPLVDLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYGISYPDKKTVKEYIE 920
            ITLPDGS +       SP+D+A  I   LA   +   V+G L D +  ++ D  L + T   D G +   HS AH+LG AI+Q +   K+ IGP    G  FYYD    D  L  +  + ++    + A       + +V+  +A + F+     +K+ I+++ +  D    +Y     +D+CRGPH+PN  F   F   K S AYWRG+   + LQR+YG ++ DKK +  Y++
Sbjct:    4 ITLPDGSQRHYDH-AVSPLDVALDIGPGLAKACIAGRVDGELIDASDKIDTDAQLAIITAKDDAGLEIIRHSCAHLLGHAIKQLWPDTKMAIGPVIDNG--FYYDVDI-DRTLTQEDIELLEKRMHELADTDYDVIKKKVSWQEARDAFAARGETYKIAILDENISHDDRPGLYHHEEYIDMCRGPHVPNMRFCHHFKLQKTSGAYWRGDSKNKMLQRIYGTAWADKKQLASYLQ 234          
BLAST of FC878164 vs. ExPASy Swiss-Prot
Match: SYT_DEIDV (Threonyl-tRNA synthetase OS=Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) GN=thrS PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 2.373e-28
Identity = 84/238 (35.29%), Postives = 121/238 (50.84%), Query Frame = 3
Query:  228 ITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFDSD-EGRDTFWHSSAHILGQAIEQQYGCKLCIGPCTTRGEG-FYYDAFYGDLGLNPDHFKSID-SEADKAAKE----KQPFERIEVTRDQALEMFSDNNFKVEIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKG-FGCLKASSAYWRGNKDRESLQRVYGISYPDKKTVKEYI 917
            + LPDG   E     T+ +D A  I   LA +AL +  NG L D+  PL     + L T  +  +    F HS  H++ QA+ + Y  K        RG G    + +Y D  L P+  +  D  E +K  +E       F R EV++ + L  F  + +K E+I  LP D+ IT Y+ G  VDLCRGPH P+T  + G F  +  S AYWRGN+    LQRVYG+++  +K + EY+
Sbjct:    3 VVLPDGKQLELPMGATA-LDAASAIGPRLAQDALAATANGELVDLMTPLPDGASITLITKKNPGDAAPLFRHSLGHVMSQAVGEYYRAKGYSDDRIKRGVGPSIENGWYQDFDL-PEPLREEDLPEIEKIMREILSRNLAFRRREVSKAEGLAQFPHDPYKQELIQGLPDDEPITFYQQGDYVDLCRGPHFPSTGRLPGAFKLMSTSGAYWRGNEKNPILQRVYGVAFASQKELDEYL 238          
BLAST of FC878164 vs. ExPASy Swiss-Prot
Match: SYT_SILPO (Threonyl-tRNA synthetase OS=Silicibacter pomeroyi GN=thrS PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 3.099e-28
Identity = 76/238 (31.93%), Postives = 126/238 (52.94%), Query Frame = 3
Query:  222 IKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTF-DSDEGRDTFWHSSAHILGQAIEQQY-GCKLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAAKEKQPFERIEVTRDQALEMFSDNN--FKVEIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKG--FGCLKASSAYWRGNKDRESLQRVYGISYPDKKTVKEYI 917
            I +T PDG+ +      T P  +A  IS SLA  A+ + V+G  WD+  P+  D  + + T  D  +  +   H  AHI+ +A+++ +   K+ IGP    G  +YYD F       P+    I+ +  +   +++P       R +A+E +  NN  +KVE+I  +P  + I +Y  G   DLCRGPH+ +T  V G  F  +  + AYWRG+ +R  LQR+YG+++  K+ +K ++
Sbjct:    4 ISLTFPDGNARSYDAGVT-PAQVAADISTSLAKKAISATVDGKHWDLQWPIATDAQIAIHTMADEAQANELVRHDLAHIMARAVQEIWPATKVTIGPVIENG--WYYD-FDRAEPFTPEDLGLIEKKMKEIINKREPVTTEVWERTRAIEFYKANNEPYKVELIEAIPGTEPIRMYWHGHWQDLCRGPHLQHTGQVPGDAFKLMSIAGAYWRGDSNRPMLQRIYGVAFTGKEKLKAHL 237          
BLAST of FC878164 vs. ExPASy Swiss-Prot
Match: SYT_RHIME (Threonyl-tRNA synthetase OS=Rhizobium meliloti GN=thrS PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 3.099e-28
Identity = 72/236 (30.51%), Postives = 132/236 (55.93%), Query Frame = 3
Query:  222 IKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFDSDEGRDTFWHSSAHILGQAIEQQY-GCKLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAAKEKQPFERIEVTRDQALEMFS--DNNFKVEIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFV-KGFGCLKASSAYWRGNKDRESLQRVYGISYPDKKTVKEYI 917
            + +T PDGSV+E     T   D+A+ ISKSLA  A+   ++G L D++  +  +  +++ T +     +   H +AH++ +A+++ + G ++ IGP    G  FYYD F  +    PD    I+ +  +     +PF +   +RD+A E+F+    N+KVE+++ +P  + + +Y  G   DLCRGPH+ +T  +   F  +K + AYWRG+ +   L R+YG ++  ++ + +Y+
Sbjct:    6 VSLTFPDGSVREFAAGTTG-RDVAESISKSLAKKAVAIAISGELRDLSDAV-TEGRIEIVTREDKRALELIRHDAAHVMAEAVQELWPGTQVTIGPVIDNG--FYYD-FAKNEPFTPDDLPVIEKKMREIIARNKPFTKEVWSRDRAKEVFAAKGENYKVELVDAIPEGQDLKIYYQGDWFDLCRGPHMASTGQIGTAFKLMKVAGAYWRGDSNNPMLTRIYGTAWHTQEELDQYL 236          
The following BLAST results are available for this feature:
BLAST of FC878164 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SYT_THELT1.391e-2830.96Threonyl-tRNA synthetase OS=Thermotoga lettingae (... [more]
SYT_TREDE1.817e-2839.16Threonyl-tRNA synthetase OS=Treponema denticola GN... [more]
SYT_SULSY1.817e-2833.67Threonyl-tRNA synthetase OS=Sulfurihydrogenibium s... [more]
SYT_ERWT91.817e-2834.19Threonyl-tRNA synthetase OS=Erwinia tasmaniensis (... [more]
SYT_COLP31.817e-2833.33Threonyl-tRNA synthetase OS=Colwellia psychrerythr... [more]
SYT_PECCP2.373e-2832.77Threonyl-tRNA synthetase OS=Pectobacterium carotov... [more]
SYT_ERWCT2.373e-2832.77Threonyl-tRNA synthetase OS=Erwinia carotovora sub... [more]
SYT_DEIDV2.373e-2835.29Threonyl-tRNA synthetase OS=Deinococcus deserti (s... [more]
SYT_SILPO3.099e-2831.93Threonyl-tRNA synthetase OS=Silicibacter pomeroyi ... [more]
SYT_RHIME3.099e-2830.51Threonyl-tRNA synthetase OS=Rhizobium meliloti GN=... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA83DG03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA83DG03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878164 ID=FC878164; Name=FC878164; organism=Citrus clementina; type=EST; length=922bp
CGCTTACATTCAACTGCCGCCGTATTTCCTCTCAACTCTTTCGCTGTCAA
AACACTAAACCCTCCTCCGCCACCAATCTCCGCCGCATCCGCGCGATGCC
GTCTCCAAATCAAGTCAAAGACGAAGAGTATCTCAACAAAGTCATTCCCA
AACGTATCAGTCTCTTCCAGTCTCTTCAGTCCGAACAACAAGCCCGCCTC
CAGTCTCTCCCCCATGATCCCATCAAGATTACTCTGCCCGATGGGTCTGT
GAAAGAAGGCAAGAGATGGGAGACTTCGCCCATGGATATTGCTCAGGGAA
TTTCGAAGAGTTTGGCGGCCAATGCTTTGATTTCCATGGTGAATGGTGTT
TTGTGGGACATGACTAGGCCCTTAGAGGCCGATTGTGACCTCAAGTTATT
CACTTTTGATTCTGACGAAGGCCGTGATACTTTCTGGCACTCTAGTGCCC
ACATTCTAGGACAGGCAATTGAGCAGCAGTATGGTTGTAAGTTGTGTATT
GGTCCATGCACAACAAGAGGAGAGGGTTTCTATTATGATGCATTTTATGG
GGACTTGGGCTTGAATCCAGATCACTTCAAGTCAATTGATTCAGAAGCAG
ATAAAGCTGCCAAGGAAAAGCAGCCTTTTGAGCGCATTGAAGTTACAAGA
GATCAGGCTCTTGAGATGTTTTCCGACAACAATTTTAAGGTTGAAATAAT
CAATGATCTGCCTGCTGACAAAACTATCACAGTGTACAGATGTGGTCCCT
TGGTTGATTTGTGTCGTGGACCTCATATACCAAATACATCATTTGTGAAA
GGATTTGGGTGTTTGAAGGCTTCATCGGCTTATTGGAGGGGGAACAAGGA
TCGTGAGAGTTTACAGAGAGTTTATGGGATATCATACCCTGATAAAAAAA
CGGTGAAGGAATATATTGAACT
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