FC878164

Overview
NameFC878164
Unique NameFC878164
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length922
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878164 vs. ExPASy Swiss-Prot
Match: SYT_STAES (Threonyl-tRNA synthetase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=thrS PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 8.400e-42
Identity = 92/234 (39.32%), Postives = 140/234 (59.83%), Query Frame = 3
Query:  222 IKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFDSDEGRDTFWHSSAHILGQAIEQQYG-CKLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAAKEKQPFERIEVTRDQALEMFSDNNFKVEIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYGISYPDKKTVKEYIE 920
            I I  PDG+ KE  +  T+  DIAQ IS  L   A+    NG L D+TRPLE D  +++ T  S+E  +   HS+AH++ QA+++ YG  K  +GP    G  FYYD F  D  ++ D F  I+    +   E     R  V++++A + F D+ +K+E+I+ +P D+++T+Y  G   DLCRG H+P+TS +K F  L  + AYWRGN D + LQR+YG ++ DKK +K +++
Sbjct:    4 INIQFPDGNTKEFDKGTTTE-DIAQSISPGLRKKAVAGKFNGQLVDLTRPLEQDGAIEIITPGSEEALEVLRHSTAHLMAQALKRLYGDVKFGVGPVIEGG--FYYD-FDMDDKVSSDDFDKIEKTMKQIVNENHKIVREVVSKEKAKDFFKDDPYKLELIDAIPEDESVTLYTQGEFTDLCRGVHVPSTSKIKEFKLLSTAGAYWRGNSDNKMLQRIYGTAFFDKKDLKAHLK 233          
BLAST of FC878164 vs. ExPASy Swiss-Prot
Match: SYT_STAEQ (Threonyl-tRNA synthetase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=thrS PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 8.400e-42
Identity = 92/234 (39.32%), Postives = 140/234 (59.83%), Query Frame = 3
Query:  222 IKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFDSDEGRDTFWHSSAHILGQAIEQQYG-CKLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAAKEKQPFERIEVTRDQALEMFSDNNFKVEIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYGISYPDKKTVKEYIE 920
            I I  PDG+ KE  +  T+  DIAQ IS  L   A+    NG L D+TRPLE D  +++ T  S+E  +   HS+AH++ QA+++ YG  K  +GP    G  FYYD F  D  ++ D F  I+    +   E     R  V++++A + F D+ +K+E+I+ +P D+++T+Y  G   DLCRG H+P+TS +K F  L  + AYWRGN D + LQR+YG ++ DKK +K +++
Sbjct:    4 INIQFPDGNTKEFDKGTTTE-DIAQSISPGLRKKAVAGKFNGQLVDLTRPLEQDGAIEIITPGSEEALEVLRHSTAHLMAQALKRLYGDVKFGVGPVIEGG--FYYD-FDMDDKVSSDDFDKIEKTMKQIVNENHKIVREVVSKEKAKDFFKDDPYKLELIDAIPEDESVTLYTQGEFTDLCRGVHVPSTSKIKEFKLLSTAGAYWRGNSDNKMLQRIYGTAFFDKKDLKAHLK 233          
BLAST of FC878164 vs. ExPASy Swiss-Prot
Match: SYT_STAAN (Threonyl-tRNA synthetase OS=Staphylococcus aureus (strain N315) GN=thrS PE=1 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 8.400e-42
Identity = 91/236 (38.56%), Postives = 141/236 (59.75%), Query Frame = 3
Query:  216 DPIKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFDSDEGRDTFWHSSAHILGQAIEQQYG-CKLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAAKEKQPFERIEVTRDQALEMFSDNNFKVEIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYGISYPDKKTVKEYIE 920
            + I I  PDG+ K   +  T+  DIAQ IS  L   A+    NG L D+T+PLE D  + + T  S+E  +   HS+AH++  AI++ YG  K  +GP    G  FYYD F  D  ++ D F+ I+    +   E    ER  V+RD+A E+FS++ +K+E+I+ +P D+ +T+Y  G   DLCRG H+P+T+ +K F  L  + AYWRG+ + + LQR+YG ++ DKK +K +++
Sbjct:    2 EQINIQFPDGNKKAFDKGTTTE-DIAQSISPGLRKKAVAGKFNGQLVDLTKPLETDGSIGIVTPGSEEALEVLRHSTAHLMAHAIKRLYGNVKFGVGPVIEGG--FYYD-FDIDQNISSDDFEQIEKTMKQIVNENMKIERKVVSRDEAKELFSNDEYKLELIDAIPEDENVTLYSQGDFTDLCRGVHVPSTAKIKEFKLLSTAGAYWRGDSNNKMLQRIYGTAFFDKKELKAHLQ 233          
BLAST of FC878164 vs. ExPASy Swiss-Prot
Match: SYT_STAAM (Threonyl-tRNA synthetase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=thrS PE=1 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 8.400e-42
Identity = 91/236 (38.56%), Postives = 141/236 (59.75%), Query Frame = 3
Query:  216 DPIKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFDSDEGRDTFWHSSAHILGQAIEQQYG-CKLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAAKEKQPFERIEVTRDQALEMFSDNNFKVEIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYGISYPDKKTVKEYIE 920
            + I I  PDG+ K   +  T+  DIAQ IS  L   A+    NG L D+T+PLE D  + + T  S+E  +   HS+AH++  AI++ YG  K  +GP    G  FYYD F  D  ++ D F+ I+    +   E    ER  V+RD+A E+FS++ +K+E+I+ +P D+ +T+Y  G   DLCRG H+P+T+ +K F  L  + AYWRG+ + + LQR+YG ++ DKK +K +++
Sbjct:    2 EQINIQFPDGNKKAFDKGTTTE-DIAQSISPGLRKKAVAGKFNGQLVDLTKPLETDGSIGIVTPGSEEALEVLRHSTAHLMAHAIKRLYGNVKFGVGPVIEGG--FYYD-FDIDQNISSDDFEQIEKTMKQIVNENMKIERKVVSRDEAKELFSNDEYKLELIDAIPEDENVTLYSQGDFTDLCRGVHVPSTAKIKEFKLLSTAGAYWRGDSNNKMLQRIYGTAFFDKKELKAHLQ 233          
BLAST of FC878164 vs. ExPASy Swiss-Prot
Match: SYT_STAA1 (Threonyl-tRNA synthetase OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=thrS PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 8.400e-42
Identity = 91/236 (38.56%), Postives = 141/236 (59.75%), Query Frame = 3
Query:  216 DPIKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFDSDEGRDTFWHSSAHILGQAIEQQYG-CKLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAAKEKQPFERIEVTRDQALEMFSDNNFKVEIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYGISYPDKKTVKEYIE 920
            + I I  PDG+ K   +  T+  DIAQ IS  L   A+    NG L D+T+PLE D  + + T  S+E  +   HS+AH++  AI++ YG  K  +GP    G  FYYD F  D  ++ D F+ I+    +   E    ER  V+RD+A E+FS++ +K+E+I+ +P D+ +T+Y  G   DLCRG H+P+T+ +K F  L  + AYWRG+ + + LQR+YG ++ DKK +K +++
Sbjct:    2 EQINIQFPDGNKKAFDKGTTTE-DIAQSISPGLRKKAVAGKFNGQLVDLTKPLETDGSIGIVTPGSEEALEVLRHSTAHLMAHAIKRLYGNVKFGVGPVIEGG--FYYD-FDIDQNISSDDFEQIEKTMKQIVNENMKIERKVVSRDEAKELFSNDEYKLELIDAIPEDENVTLYSQGDFTDLCRGVHVPSTAKIKEFKLLSTAGAYWRGDSNNKMLQRIYGTAFFDKKELKAHLQ 233          
BLAST of FC878164 vs. ExPASy Swiss-Prot
Match: SYT_BACHD (Threonyl-tRNA synthetase OS=Bacillus halodurans GN=thrS PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 8.400e-42
Identity = 94/239 (39.33%), Postives = 140/239 (58.58%), Query Frame = 3
Query:  216 DPIKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFDSDEGRDTFWHSSAHILGQAIEQQY---GCKLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAAKEKQPFERIEVTRDQALEMFSD--NNFKVEIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYGISYPDKKTVKEYI 917
            D I IT PDG+VKE  +  T+  +IA  IS  L   AL  M++G L D+  P+E D  + + T +SDE  +   HS+AH++ QA+++ +     KL +GP    G  FYYD    D  L P+    I+ E  K   E  P ER+ V+R++AL  + +  + +K+E+INDLP D+TIT+Y  G   DLCRG H+P+T  +K F  L  + AYWRG+   + LQR+YG ++  K  + E++
Sbjct:    3 DMINITFPDGAVKEFPKGTTTA-EIAGSISPGLKKKALAGMLDGTLLDLNTPIEQDGTITIVTPESDEALEVLRHSTAHVMAQALKRLFKDRNVKLGVGPVIEGG--FYYDVDM-DESLTPEDLPKIEKEMKKIIGENLPIERVVVSREEALARYEEVGDPYKIELINDLPEDETITIYEQGEFFDLCRGVHVPSTGKLKEFKLLNLAGAYWRGDSSNKMLQRIYGTAFFKKADLDEHL 237          
BLAST of FC878164 vs. ExPASy Swiss-Prot
Match: SYT_STAA8 (Threonyl-tRNA synthetase OS=Staphylococcus aureus (strain NCTC 8325) GN=thrS PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 1.097e-41
Identity = 90/236 (38.14%), Postives = 141/236 (59.75%), Query Frame = 3
Query:  216 DPIKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFDSDEGRDTFWHSSAHILGQAIEQQYG-CKLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAAKEKQPFERIEVTRDQALEMFSDNNFKVEIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYGISYPDKKTVKEYIE 920
            + I I  PDG+ K   +  T+  DIAQ IS  L   A+    NG L D+T+PLE D  +++ T  S+E  +   HS+AH++  AI++ YG  K  +GP    G  FYYD F  D  ++ D F+ I+    +   E    ER  V+RD+  E+FS++ +K+E+I+ +P D+ +T+Y  G   DLCRG H+P+T+ +K F  L  + AYWRG+ + + LQR+YG ++ DKK +K +++
Sbjct:    2 EQINIQFPDGNKKAFDKGTTTE-DIAQSISPGLRKKAVAGKFNGQLVDLTKPLETDGSIEIVTPGSEEALEVLRHSTAHLMAHAIKRLYGNVKFGVGPVIEGG--FYYD-FDIDQNISSDDFEQIEKTMKQIVNENMKIERKVVSRDEVKELFSNDEYKLELIDAIPEDENVTLYSQGDFTDLCRGVHVPSTAKIKEFKLLSTAGAYWRGDSNNKMLQRIYGTAFFDKKELKAHLQ 233          
BLAST of FC878164 vs. ExPASy Swiss-Prot
Match: SYT_CLOBA (Threonyl-tRNA synthetase OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=thrS PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 1.097e-41
Identity = 90/234 (38.46%), Postives = 138/234 (58.97%), Query Frame = 3
Query:  222 IKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFDSDEGRDTFWHSSAHILGQAIEQQYG-CKLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAAKEKQPFERIEVTRDQALEMFSDNNFKVEIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYGISYPDKKTVKEYIE 920
            IK++L DGSVKE +    S  +IA+ IS+ LA NA   +VNG + D+   +  D  L + TFDS EG+D   HS +H+L  A+++ +   KL IGP    G  FYYD F  D+  +    + +++E  K  KE    E+ E+ RD+ALE+  D  +KVE+INDL  D+ I+ Y+ G   DLC GPH+ +   +K     +++ AYW+G++  + L R+YG ++  K  + EY+E
Sbjct:    2 IKVSLKDGSVKEFEAG-LSVYEIAKSISEGLARNACCGVVNGKVCDLRNKINEDVSLSICTFDSQEGKDAVRHSISHVLAYAVKRLFPQTKLAIGPSIATG--FYYD-FDKDVAFSAQDLEKLEAEMKKIIKENPSIEKFELPRDEALELMKDEPYKVELINDLGEDEIISFYKIGEFTDLCAGPHVMSLKPIKALKLTRSAGAYWKGDEKNKMLTRIYGTAFLKKSELDEYLE 231          
BLAST of FC878164 vs. ExPASy Swiss-Prot
Match: SYT_CLOPS (Threonyl-tRNA synthetase OS=Clostridium perfringens (strain SM101 / Type A) GN=thrS PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.433e-41
Identity = 92/234 (39.32%), Postives = 139/234 (59.40%), Query Frame = 3
Query:  222 IKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFDSDEGRDTFWHSSAHILGQAIEQQYGC-KLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAAKEKQPFERIEVTRDQALEMFSDNNFKVEIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYGISYPDKKTVKEYIE 920
            IKITL DGS+KE +    S  +IAQ IS+ LA NA   ++NG + D+   +  D  L++ TFDS EG+  F H+++H+L  A+++ +   KL IGP    G  FYYD F  +   + D    ++ E  K  KE    +R E+ R++ALE+  D  +KVE+INDLP  + I+ Y+ G  VDLC GPH+     +K    L+++ AYW+G++  + L RVYG ++P K  +  Y+E
Sbjct:    2 IKITLKDGSIKEVEAG-LSIFEIAQSISQGLARNACCGILNGKVEDLRFIVNEDSSLEICTFDSKEGQHAFNHTASHVLAAAVKRLFPQDKLAIGPSIDNG--FYYD-FDTEKSFSADQLNKLEEEMKKIIKENPEIKRFELPRNEALELMKDEPYKVELINDLPEGEVISFYQIGDFVDLCAGPHLMAVKPIKAVKLLRSTGAYWKGDEKNKMLSRVYGTAFPKKSELDAYLE 231          
BLAST of FC878164 vs. ExPASy Swiss-Prot
Match: SYT_CLOBB (Threonyl-tRNA synthetase OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=thrS PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.433e-41
Identity = 89/234 (38.03%), Postives = 140/234 (59.83%), Query Frame = 3
Query:  222 IKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFDSDEGRDTFWHSSAHILGQAIEQQYG-CKLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAAKEKQPFERIEVTRDQALEMFSDNNFKVEIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYGISYPDKKTVKEYIE 920
            IK+TL DGSVKE +    S  +IA+ IS+ LA NA   +VNG + D+   ++ D  L + TFDS EG+D   HS +H+L  A+++ +   KL IGP    G  FYYD F  D+  +    + +++E  K  KE    E+ E+ R++ALE+  D  +KVE+INDL  D+ I+ Y+ G   DLC GPH+ +   +K    ++++ AYW+G++  + L R+YG ++  K  + EY++
Sbjct:    2 IKVTLKDGSVKEFEAG-LSVYEIAKSISEGLARNACCGVVNGKVCDLREEVKEDVSLSICTFDSQEGKDAVRHSISHVLAYAVKRLFPETKLAIGPSIATG--FYYD-FDKDVAFSAQDLEKLEAEMKKIIKENPSIEKFELPRNEALELMKDEPYKVELINDLGEDEIISFYKLGEFTDLCAGPHVMSLKPIKAIKLIRSAGAYWKGDEKNKMLTRIYGTAFLKKSELDEYLD 231          
The following BLAST results are available for this feature:
BLAST of FC878164 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SYT_STAES8.400e-4239.32Threonyl-tRNA synthetase OS=Staphylococcus epiderm... [more]
SYT_STAEQ8.400e-4239.32Threonyl-tRNA synthetase OS=Staphylococcus epiderm... [more]
SYT_STAAN8.400e-4238.56Threonyl-tRNA synthetase OS=Staphylococcus aureus ... [more]
SYT_STAAM8.400e-4238.56Threonyl-tRNA synthetase OS=Staphylococcus aureus ... [more]
SYT_STAA18.400e-4238.56Threonyl-tRNA synthetase OS=Staphylococcus aureus ... [more]
SYT_BACHD8.400e-4239.33Threonyl-tRNA synthetase OS=Bacillus halodurans GN... [more]
SYT_STAA81.097e-4138.14Threonyl-tRNA synthetase OS=Staphylococcus aureus ... [more]
SYT_CLOBA1.097e-4138.46Threonyl-tRNA synthetase OS=Clostridium botulinum ... [more]
SYT_CLOPS1.433e-4139.32Threonyl-tRNA synthetase OS=Clostridium perfringen... [more]
SYT_CLOBB1.433e-4138.03Threonyl-tRNA synthetase OS=Clostridium botulinum ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA83DG03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA83DG03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878164 ID=FC878164; Name=FC878164; organism=Citrus clementina; type=EST; length=922bp
CGCTTACATTCAACTGCCGCCGTATTTCCTCTCAACTCTTTCGCTGTCAA
AACACTAAACCCTCCTCCGCCACCAATCTCCGCCGCATCCGCGCGATGCC
GTCTCCAAATCAAGTCAAAGACGAAGAGTATCTCAACAAAGTCATTCCCA
AACGTATCAGTCTCTTCCAGTCTCTTCAGTCCGAACAACAAGCCCGCCTC
CAGTCTCTCCCCCATGATCCCATCAAGATTACTCTGCCCGATGGGTCTGT
GAAAGAAGGCAAGAGATGGGAGACTTCGCCCATGGATATTGCTCAGGGAA
TTTCGAAGAGTTTGGCGGCCAATGCTTTGATTTCCATGGTGAATGGTGTT
TTGTGGGACATGACTAGGCCCTTAGAGGCCGATTGTGACCTCAAGTTATT
CACTTTTGATTCTGACGAAGGCCGTGATACTTTCTGGCACTCTAGTGCCC
ACATTCTAGGACAGGCAATTGAGCAGCAGTATGGTTGTAAGTTGTGTATT
GGTCCATGCACAACAAGAGGAGAGGGTTTCTATTATGATGCATTTTATGG
GGACTTGGGCTTGAATCCAGATCACTTCAAGTCAATTGATTCAGAAGCAG
ATAAAGCTGCCAAGGAAAAGCAGCCTTTTGAGCGCATTGAAGTTACAAGA
GATCAGGCTCTTGAGATGTTTTCCGACAACAATTTTAAGGTTGAAATAAT
CAATGATCTGCCTGCTGACAAAACTATCACAGTGTACAGATGTGGTCCCT
TGGTTGATTTGTGTCGTGGACCTCATATACCAAATACATCATTTGTGAAA
GGATTTGGGTGTTTGAAGGCTTCATCGGCTTATTGGAGGGGGAACAAGGA
TCGTGAGAGTTTACAGAGAGTTTATGGGATATCATACCCTGATAAAAAAA
CGGTGAAGGAATATATTGAACT
back to top