FC878164

Overview
NameFC878164
Unique NameFC878164
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length922
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878164 vs. ExPASy Swiss-Prot
Match: SYT_NATTJ (Threonyl-tRNA synthetase OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=thrS PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.871e-41
Identity = 95/238 (39.92%), Postives = 148/238 (62.18%), Query Frame = 3
Query:  222 IKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFDSDEGRDTFWHSSAHILGQAIEQQY-GCKLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAAKEKQPFERIEVTRDQALEMFSD--NNFKVEIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFVK--GFGCLKASSAYWRGNKDRESLQRVYGISYPDKKTVKEYIE 920
            +KITL DGSVKE ++  ++ +D+A+ IS  LA  A+ + V+G    + + L  +C++++ +F+ DEG D + H+S+HIL  A+++ Y   KL IGP     +GFYYD F  +  L+    + I  E  K  KE  P ER    RD+A+EMF +   ++K+E+I DL  D+ I  Y+ G  +DLC+GPH+P+T  +K      LK + AYWRG+++R  LQR+YG S+  K  ++EYI+
Sbjct:    2 LKITLKDGSVKEIEKG-SNVLDLAKSISNRLAKEAVGAKVDGKTVGLNKELNENCEVEILSFEDDEGCDIYRHTSSHILAHAVKRLYDNVKLGIGPPIK--DGFYYD-FDLEHSLSDKDLEDIKKEMKKIIKEDLPIERKVYKRDEAIEMFKEMGEDYKIELIQDLGEDEEICCYQQGDFIDLCQGPHLPSTGKIKDTALDLLKVAGAYWRGDENRAMLQRIYGTSFIKKSQLEEYIQ 235          
BLAST of FC878164 vs. ExPASy Swiss-Prot
Match: SYT_STRSY (Threonyl-tRNA synthetase OS=Streptococcus suis (strain 05ZYH33) GN=thrS PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 2.444e-41
Identity = 95/235 (40.43%), Postives = 141/235 (60.00%), Query Frame = 3
Query:  222 IKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFDSDEGRDTFWHSSAHILGQAIEQQY-GCKLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAAKEKQPFERIEVTRDQALEMFSDNNFKVEIINDLPADKT-ITVYRCGPLVDLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYGISYPDKKTVKEYIE 920
            IKIT PDG+V+E +   T+  +IA+ ISKSLA  AL    NG L D TR ++ D  L++   D D+  D   HS+AH+  QA  + +   KL +GP     +GFYYD       ++ +    I  E  K  KE  P ER EVT+++ALE+F ++ +K+E+I++   D+  +T+Y  G  VDLCRGPH+P+T  ++ F  L  + AYWRG  +   +QRVYG ++ DKK +K Y++
Sbjct:    2 IKITFPDGAVREYQAGVTT-FEIAESISKSLAKKALAGKFNGKLIDTTRAIDEDGTLEIVMPDHDDALDILRHSAAHLFAQAARRLFPDIKLGVGPAIQ--DGFYYDTDNAAGQISNEDLPRIQEEMMKIVKENFPSERREVTKEEALEIFKNDPYKLELIHEHSDDEGGLTIYTQGEYVDLCRGPHVPSTGRIQIFELLNVAGAYWRGKSENPMMQRVYGTAWFDKKDLKAYLQ 233          
BLAST of FC878164 vs. ExPASy Swiss-Prot
Match: SYT_STRS2 (Threonyl-tRNA synthetase OS=Streptococcus suis (strain 98HAH33) GN=thrS PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 2.444e-41
Identity = 95/235 (40.43%), Postives = 141/235 (60.00%), Query Frame = 3
Query:  222 IKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFDSDEGRDTFWHSSAHILGQAIEQQY-GCKLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAAKEKQPFERIEVTRDQALEMFSDNNFKVEIINDLPADKT-ITVYRCGPLVDLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYGISYPDKKTVKEYIE 920
            IKIT PDG+V+E +   T+  +IA+ ISKSLA  AL    NG L D TR ++ D  L++   D D+  D   HS+AH+  QA  + +   KL +GP     +GFYYD       ++ +    I  E  K  KE  P ER EVT+++ALE+F ++ +K+E+I++   D+  +T+Y  G  VDLCRGPH+P+T  ++ F  L  + AYWRG  +   +QRVYG ++ DKK +K Y++
Sbjct:    2 IKITFPDGAVREYQAGVTT-FEIAESISKSLAKKALAGKFNGKLIDTTRAIDEDGTLEIVMPDHDDALDILRHSAAHLFAQAARRLFPDIKLGVGPAIQ--DGFYYDTDNAAGQISNEDLPRIQEEMMKIVKENFPSERREVTKEEALEIFKNDPYKLELIHEHSDDEGGLTIYTQGEYVDLCRGPHVPSTGRIQIFELLNVAGAYWRGKSENPMMQRVYGTAWFDKKDLKAYLQ 233          
BLAST of FC878164 vs. ExPASy Swiss-Prot
Match: SYT_MARMM (Threonyl-tRNA synthetase OS=Maricaulis maris (strain MCS10) GN=thrS PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 2.444e-41
Identity = 94/236 (39.83%), Postives = 138/236 (58.47%), Query Frame = 3
Query:  222 IKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFDSDEGRDTFWHSSAHILGQAIEQQY-GCKLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAAKEKQPFERIEVTRDQALEMFSD--NNFKVEIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFV-KGFGCLKASSAYWRGNKDRESLQRVYGISYPDKKTVKEYI 917
            I +TLPDGS +E      SP+D+A  ISKSLA  A+I+ V+G  WD+ RPL+ D  + + T   D+  +   H +AHIL QA++  + G ++ IGP     +GFYYD F       P+ F++I+    +      PFER    R+ A+  F +    +K E+I DLP D+TIT+YR G   DLC GPH+P+T  + K F  +K + AYWRG+     LQR+YG ++ D K +K ++
Sbjct:    2 INVTLPDGSKRELPDG-ASPLDLAADISKSLAKAAIIATVDGQDWDLKRPLDGDAQVAIITRKDDKALEVIRHDTAHILAQAVQDLFPGTQVTIGPAIE--DGFYYD-FARSEPFTPEDFEAIEKRMGEIVDADLPFEREVWDRNDAIAKFEEMGEAYKAELIRDLPEDETITIYRQGEWFDLCLGPHLPSTGKIGKAFKLMKVAGAYWRGDHRNAMLQRIYGTAWADDKQLKAHL 233          
BLAST of FC878164 vs. ExPASy Swiss-Prot
Match: SYT_CLOPE (Threonyl-tRNA synthetase OS=Clostridium perfringens GN=thrS PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 2.444e-41
Identity = 92/234 (39.32%), Postives = 139/234 (59.40%), Query Frame = 3
Query:  222 IKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFDSDEGRDTFWHSSAHILGQAIEQQYGC-KLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAAKEKQPFERIEVTRDQALEMFSDNNFKVEIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYGISYPDKKTVKEYIE 920
            IKITL DGS+KE +    S  +IAQ IS+ LA NA   ++NG + D+   +  D  L++ TFDS EG+  F H+++H+L  A+++ +   KL IGP    G  FYYD F  +   + D    ++ E  K  KE    +R E+ R++ALE+  D  +KVE+INDLP  + I+ Y+ G  VDLC GPH+     +K    L+++ AYW+G++  + L RVYG ++P K  +  Y+E
Sbjct:    2 IKITLKDGSIKEVEAG-LSIFEIAQSISQGLARNACCGILNGKVEDLRFIVNEDSSLEICTFDSKEGQHAFNHTASHVLAAAVKRLFPQDKLAIGPSIDNG--FYYD-FDTEKPFSADQLNKLEEEMKKIIKENPEIKRFELPRNEALELMKDEPYKVELINDLPEGEVISFYQIGDFVDLCAGPHLMAVKPIKAVKLLRSTGAYWKGDEKNKMLSRVYGTAFPKKSELDAYLE 231          
BLAST of FC878164 vs. ExPASy Swiss-Prot
Match: SYT_CLOP1 (Threonyl-tRNA synthetase OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=thrS PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 2.444e-41
Identity = 92/234 (39.32%), Postives = 139/234 (59.40%), Query Frame = 3
Query:  222 IKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFDSDEGRDTFWHSSAHILGQAIEQQYGC-KLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAAKEKQPFERIEVTRDQALEMFSDNNFKVEIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYGISYPDKKTVKEYIE 920
            IKITL DGS+KE +    S  +IAQ IS+ LA NA   ++NG + D+   +  D  L++ TFDS EG+  F H+++H+L  A+++ +   KL IGP    G  FYYD F  +   + D    ++ E  K  KE    +R E+ R++ALE+  D  +KVE+INDLP  + I+ Y+ G  VDLC GPH+     +K    L+++ AYW+G++  + L RVYG ++P K  +  Y+E
Sbjct:    2 IKITLKDGSIKEVEAG-LSIFEIAQSISQGLARNACCGILNGKVEDLRFIVNEDSSLEICTFDSKEGQHAFNHTASHVLAAAVKRLFPQDKLAIGPSIDNG--FYYD-FDTEKPFSADQLNKLEEEMKKIIKENPEIKRFELPRNEALELMKDEPYKVELINDLPEGEVISFYQIGDFVDLCAGPHLMAVKPIKAVKLLRSTGAYWKGDEKNKMLSRVYGTAFPKKSELDAYLE 231          
BLAST of FC878164 vs. ExPASy Swiss-Prot
Match: SYT_BACFR (Threonyl-tRNA synthetase OS=Bacteroides fragilis GN=thrS PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 3.192e-41
Identity = 88/235 (37.45%), Postives = 140/235 (59.57%), Query Frame = 3
Query:  222 IKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFDSDEGRDTFWHSSAHILGQAIEQQY-GCKLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAAKEKQPFERIEVTRDQALEMFSDNN--FKVEIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYGISYPDKKTVKEYI 917
            IKIT PDGSV+E      + + IA+ IS  LA + L   VNG ++D+ RP+  D  + L+ ++ ++G+  FWH+SAH+L +A+++ Y G +  IGP    G  FYYD   G+  +      +I+++  +   +K+   R ++ +  AL+MF D    +K E+I++L  D  IT Y  G   DLCRGPH+  T+ +K       + AYWRG++DR+ L R+YGI++P KK + EY+
Sbjct:    2 IKITFPDGSVREYNEG-VNGLQIAESISSRLAQDVLACGVNGEIYDLGRPINEDASVVLYKWEDEQGKHAFWHTSAHLLAEALQELYPGIQFGIGPAIENG--FYYDVDPGEAVIKEADLPAIEAKMAELVAKKEAVVRRDIAKGDALKMFGDRGETYKCELISELE-DGHITTYTQGDFTDLCRGPHLMTTAPIKAIKLTSVAGAYWRGHEDRKMLTRIYGITFPKKKMLDEYL 232          
BLAST of FC878164 vs. ExPASy Swiss-Prot
Match: SYT_BACFN (Threonyl-tRNA synthetase OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=thrS PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 3.192e-41
Identity = 88/235 (37.45%), Postives = 140/235 (59.57%), Query Frame = 3
Query:  222 IKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFDSDEGRDTFWHSSAHILGQAIEQQY-GCKLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAAKEKQPFERIEVTRDQALEMFSDNN--FKVEIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYGISYPDKKTVKEYI 917
            IKIT PDGSV+E      + + IA+ IS  LA + L   VNG ++D+ RP+  D  + L+ ++ ++G+  FWH+SAH+L +A+++ Y G +  IGP    G  FYYD   G+  +      +I+++  +   +K+   R ++ +  AL+MF D    +K E+I++L  D  IT Y  G   DLCRGPH+  T+ +K       + AYWRG++DR+ L R+YGI++P KK + EY+
Sbjct:    2 IKITFPDGSVREYNEG-VNGLQIAESISSRLAQDVLACGVNGEIYDLGRPINEDASVVLYKWEDEQGKHAFWHTSAHLLAEALQELYPGIQFGIGPAIENG--FYYDVDPGEAVIKEADLPAIEAKMAELVAKKEAVVRRDIAKGDALKMFGDRGETYKCELISELE-DGHITTYTQGDFTDLCRGPHLMTTAPIKAIKLTSVAGAYWRGHEDRKMLTRIYGITFPKKKMLDEYL 232          
BLAST of FC878164 vs. ExPASy Swiss-Prot
Match: SYT_CLOBK (Threonyl-tRNA synthetase OS=Clostridium botulinum (strain Okra / Type B1) GN=thrS PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 4.169e-41
Identity = 93/235 (39.57%), Postives = 134/235 (57.02%), Query Frame = 3
Query:  222 IKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFDSDEGRDTFWHSSAHILGQAIEQQYG-CKLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAAKEKQPFERIEVTRDQALEMFSDNN--FKVEIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYGISYPDKKTVKEYI 917
            IKITL DG V E +       DIA  IS +L   AL + ++G   D+   L  D  L++ TF+ + G+    H+ AHIL QA+++ Y   KL IGP    G  FYYD F  D    P+  + I++E  K  KE    ER E+ R++A+ +  +NN  +KVE+I DLP  + I+ Y+ G   DLC GPH+P+T  VK    L  + AYWRGN++ + LQR+YG ++  K  + EY+
Sbjct:    2 IKITLKDGKVMEFEEG-IKISDIAMKISPALYKKALAAKIDGETMDLMTELHKDSSLEILTFEDEMGKWALRHTGAHILAQAVKRLYPEVKLAIGPAIDTG--FYYD-FEADFTFTPEILEKIEAEIKKIIKENHKLERFELPREEAINLMKENNEDYKVELIEDLPEGEVISFYKQGDFTDLCAGPHVPSTGKVKSVKLLSLAGAYWRGNENNKMLQRIYGTAFTKKSELDEYL 232          
BLAST of FC878164 vs. ExPASy Swiss-Prot
Match: SYT_THETN (Threonyl-tRNA synthetase OS=Thermoanaerobacter tengcongensis GN=thrS PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 9.287e-41
Identity = 87/233 (37.34%), Postives = 142/233 (60.94%), Query Frame = 3
Query:  228 ITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFDSDEGRDTFWHSSAHILGQAIEQQY-GCKLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAAKEKQPFERIEVTRDQALEMFS--DNNFKVEIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYGISYPDKKTVKEYI 917
            ITL DG+ +E ++  T   +IA+ IS  LA  A+    NG + ++   +E D +L++ TF+ +EG+  +WH+S+HIL QA+++ +   KL IGP    G  FYYD F  +     + F++I+ E +K  KE    ER  +++++A++     D  +KVE+I ++P  + I+ Y+ G  VDLC GPH+P+T  VK    L  + AYW+G++  + LQR+YGIS+P K  + EY+
Sbjct:   13 ITLRDGTKREFEKGITV-YEIAKSISDKLAREAVGGKFNGKIVELNTKIEEDGELEILTFEDEEGKKIYWHTSSHILAQAVKRLFKDVKLAIGPAIDNG--FYYD-FDTERPFTTEDFEAIEEEMNKIIKEDYKLERFVLSKEEAIKFMKEKDEPYKVELIEEIPEGEEISFYKQGEFVDLCAGPHLPSTGMVKAIKLLSVAGAYWKGDEKNKMLQRIYGISFPKKSMLDEYL 241          
The following BLAST results are available for this feature:
BLAST of FC878164 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SYT_NATTJ1.871e-4139.92Threonyl-tRNA synthetase OS=Natranaerobius thermop... [more]
SYT_STRSY2.444e-4140.43Threonyl-tRNA synthetase OS=Streptococcus suis (st... [more]
SYT_STRS22.444e-4140.43Threonyl-tRNA synthetase OS=Streptococcus suis (st... [more]
SYT_MARMM2.444e-4139.83Threonyl-tRNA synthetase OS=Maricaulis maris (stra... [more]
SYT_CLOPE2.444e-4139.32Threonyl-tRNA synthetase OS=Clostridium perfringen... [more]
SYT_CLOP12.444e-4139.32Threonyl-tRNA synthetase OS=Clostridium perfringen... [more]
SYT_BACFR3.192e-4137.45Threonyl-tRNA synthetase OS=Bacteroides fragilis G... [more]
SYT_BACFN3.192e-4137.45Threonyl-tRNA synthetase OS=Bacteroides fragilis (... [more]
SYT_CLOBK4.169e-4139.57Threonyl-tRNA synthetase OS=Clostridium botulinum ... [more]
SYT_THETN9.287e-4137.34Threonyl-tRNA synthetase OS=Thermoanaerobacter ten... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA83DG03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA83DG03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878164 ID=FC878164; Name=FC878164; organism=Citrus clementina; type=EST; length=922bp
CGCTTACATTCAACTGCCGCCGTATTTCCTCTCAACTCTTTCGCTGTCAA
AACACTAAACCCTCCTCCGCCACCAATCTCCGCCGCATCCGCGCGATGCC
GTCTCCAAATCAAGTCAAAGACGAAGAGTATCTCAACAAAGTCATTCCCA
AACGTATCAGTCTCTTCCAGTCTCTTCAGTCCGAACAACAAGCCCGCCTC
CAGTCTCTCCCCCATGATCCCATCAAGATTACTCTGCCCGATGGGTCTGT
GAAAGAAGGCAAGAGATGGGAGACTTCGCCCATGGATATTGCTCAGGGAA
TTTCGAAGAGTTTGGCGGCCAATGCTTTGATTTCCATGGTGAATGGTGTT
TTGTGGGACATGACTAGGCCCTTAGAGGCCGATTGTGACCTCAAGTTATT
CACTTTTGATTCTGACGAAGGCCGTGATACTTTCTGGCACTCTAGTGCCC
ACATTCTAGGACAGGCAATTGAGCAGCAGTATGGTTGTAAGTTGTGTATT
GGTCCATGCACAACAAGAGGAGAGGGTTTCTATTATGATGCATTTTATGG
GGACTTGGGCTTGAATCCAGATCACTTCAAGTCAATTGATTCAGAAGCAG
ATAAAGCTGCCAAGGAAAAGCAGCCTTTTGAGCGCATTGAAGTTACAAGA
GATCAGGCTCTTGAGATGTTTTCCGACAACAATTTTAAGGTTGAAATAAT
CAATGATCTGCCTGCTGACAAAACTATCACAGTGTACAGATGTGGTCCCT
TGGTTGATTTGTGTCGTGGACCTCATATACCAAATACATCATTTGTGAAA
GGATTTGGGTGTTTGAAGGCTTCATCGGCTTATTGGAGGGGGAACAAGGA
TCGTGAGAGTTTACAGAGAGTTTATGGGATATCATACCCTGATAAAAAAA
CGGTGAAGGAATATATTGAACT
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