FC878172

Overview
NameFC878172
Unique NameFC878172
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length966
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878172 vs. ExPASy Swiss-Prot
Match: KUP1_SYNFM (Probable potassium transport system protein kup 1 OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=kup1 PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.668e-27
Identity = 74/247 (29.96%), Postives = 129/247 (52.23%), Query Frame = 1
Query:  238 RWENLVLAYKTLGVVFGGLVTSPLYV----YPSMPLKSPTEDDYLGIYSIMFWTLTLIGVVKYASIALKADDQGEGGTFALYSLLSRKMDIGFFSAKNLDSNSIFHEGAENKSRLGKFFEKSILARRILLFIAMLGMCMLIGDGILTPAISVLSAMDGIRAPFPSVSKSLVEALSAIVLIVLFLLQKFGTSRVSFLFSPIMGAWTFSTPLVGIYSIIHHYPGIFKALSPHYTFHFFWRKGKEGWLLL 966
            R   L LA   LG+V+G + TSPLY     +      +P   + +G+ S++ W+LT++  +KY +  ++AD++GEGG FAL +L+                              GK   +   AR +++  A+ G  +L GDG +TP+I+VLSA++G+       +K+L+  L+  +L+ LFL+Q  GT+++  +F P+M  W  +   +G+  I+ + P +  A+SP Y + FF      G ++L
Sbjct:   42 RGRMLSLALGALGIVYGDIGTSPLYTIKECFHGTHAIAPNPANIMGVLSLILWSLTMVVSIKYITFMMRADNRGEGGIFALLALVPMS---------------------------GKLISRG--ARAVVVMAALTGAALLYGDGFITPSITVLSAIEGLEVA-TDAAKNLIVPLACGILLGLFLVQSRGTAKIGRIFGPVMLVWFATIATLGLLCIVRN-PVVLDAVSPVYAYRFFAEHHVHGLVVL 257          
BLAST of FC878172 vs. ExPASy Swiss-Prot
Match: KUP_GEOLS (Probable potassium transport system protein kup OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=kup PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 2.179e-27
Identity = 77/245 (31.43%), Postives = 125/245 (51.02%), Query Frame = 1
Query:  241 WENLVLAYKTLGVVFGGLVTSPLYVYPSM-PLKSPTEDDYLGIYSIMFWTLTLIGVVKYASIALKADDQGEGGTFALYSLLSRKMDIGFFSAKNLDSNSIFHEGAENKSRLGKFFEKSILARRILLFIAMLGMCMLIGDGILTPAISVLSAMDG--IRAPFPSVSKSLVEALSAIVLIVLFLLQKFGTSRVSFLFSPIMGAWTFSTPLVGIYSIIHHYPGIFKALSPHYTFHFFWRKGKEGWLLL 966
            W  +V   K +G+VFG + TSP+Y    +  L  PT  +  GI S++FWT+T++   +YA +A++   +GEGG   L  +L+R +  G                                    ++F+  LG+ +L+GDG++TPAIS+LSA++G  +      + +S +  ++AI+ + LF+ Q  GT +V+  F PIM  W  S  L G  S+  H P +  A+SPHY   F    G  G+++L
Sbjct:   10 WGGIV---KAMGLVFGDIGTSPIYTLTVVFALTEPTMQNVFGILSLVFWTMTILVTAEYAWLAMRLGRKGEGGAIVLKEILARMIRPG-------------------------------RQLTFVVFLTYLGVSLLMGDGVITPAISILSAVEGMVLIPGLGGLHQSWLILIAAIIAVGLFVFQFKGTDKVAGAFGPIMVVWFASLALSGAVSVASH-PTVLFAVSPHYALQFLLDNGLAGFIVL 219          
BLAST of FC878172 vs. ExPASy Swiss-Prot
Match: KUP1_RALEH (Probable potassium transport system protein kup 1 OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=kup1 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 2.179e-27
Identity = 74/241 (30.71%), Postives = 124/241 (51.45%), Query Frame = 1
Query:  256 LAYKTLGVVFGGLVTSPLYVYPSMPLKSP----TEDDYLGIYSIMFWTLTLIGVVKYASIALKADDQGEGGTFALYSLLSRKMDIGFFSAKNLDSNSIFHEGAENKSRLGKFFEKSILARRILLFIAMLGMCMLIGDGILTPAISVLSAMDGIRAPFPSVSKSLVEALSAIVLIVLFLLQKFGTSRVSFLFSPIMGAWTFSTPLVGIYSIIHHYPGIFKALSPHYTFHFFWRKGKEGWLLL 966
            L    +GVVFG + TSPLY       K      + +  LG+ S++FW + ++  +KY    ++AD+ GEGG  AL +L+ R +                        R G+         R+L+ + + G CM  GD ++TPAISVLSA++G+    P +S+ ++  ++ ++L  LFL+Q+ GT+ +  LF PIM AW  +   +GI  ++   P I KA++P+Y   F      + +++L
Sbjct:   19 LVLGAVGVVFGDIGTSPLYALKECFSKEHGIMFSPEAVLGVISMLFWAMIIVVSIKYVVFVMRADNDGEGGVLALMALVLRTV----------------------APRSGR--------ARVLMMLGIFGACMFYGDAVITPAISVLSAVEGLEIAAPQLSQFVI-PITLMILAALFLIQRHGTATMGKLFGPIMTAWFLALGGLGILHLV-QAPEILKAINPYYAITFLVEHALQAFIVL 227          
BLAST of FC878172 vs. ExPASy Swiss-Prot
Match: KUP_XANC5 (Probable potassium transport system protein kup OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=kup PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.845e-27
Identity = 79/231 (34.20%), Postives = 118/231 (51.08%), Query Frame = 1
Query:  256 LAYKTLGVVFGGLVTSPLYVY-----PSMPLKSPTEDDYLGIYSIMFWTLTLIGVVKYASIALKADDQGEGGTFALYSLLSRKMDIGFFSAKNLDSNSIFHEGAENKSRLGKFFEKSILARRILLFIAMLGMCMLIGDGILTPAISVLSAMDGIRAPFPSVSKSLVEALSAIVLIVLFLLQKFGTSRVSFLFSPIMGAWTFSTPLVGIYSIIHHYPGIFKALSPHYTFHFF 933
            L    +GVVFG + TSPLY       P   L +P  D  LGI S++FW L L+  +KY ++ ++AD+ GEGG  AL +L  R +  G        S S++  G                       + + G  +  GDG++TPAISVLSA++G+    P + +  V  ++ +VL +LFL Q+FGT RV   F PI   W F+   +G+Y++    P +  AL+P +   FF
Sbjct:   21 LVIGAIGVVFGDIGTSPLYTLKEAFSPHYGL-TPDHDTVLGILSLVFWALMLVVTLKYVTVIMRADNDGEGGIMALTALAQRTLPGG--------SRSMYVVG----------------------ILGIFGASLFFGDGVITPAISVLSAVEGLEVAAPRL-EPFVVPITLVVLGMLFLAQRFGTERVGKAFGPITLLWFFALGAIGVYNMA-RAPEVLHALNPWWGVRFF 218          
BLAST of FC878172 vs. ExPASy Swiss-Prot
Match: KUP2_GEOMG (Probable potassium transport system protein kup 2 OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=kup2 PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.845e-27
Identity = 77/237 (32.49%), Postives = 126/237 (53.16%), Query Frame = 1
Query:  265 KTLGVVFGGLVTSPLYVYPS-MPLKSPTEDDYLGIYSIMFWTLTLIGVVKYASIALKADDQGEGGTFALYSLLSRKMDIGFFSAKNLDSNSIFHEGAENKSRLGKFFEKSILARRILLFIAMLGMCMLIGDGILTPAISVLSAMDGIR--APFPSVSKSLVEALSAIVLIVLFLLQKFGTSRVSFLFSPIMGAWTFSTPLVGIYSIIHHYPGIFKALSPHYTFHFFWRKGKEGWLLL 966
            K++G+VFG + TSP+Y     M L  P  +  LGI S++ WTL ++  V+YA +A+    +GEGGT  L  +L R +  G   A                                + F+A +G+ +L+GDGI+TPAIS+LSA++G+R    + ++++ ++  ++A++ ++LF+ Q  GT +V+  F PIM  W  +  L GI SI    P +  A+SPH+   F    G  G+ +L
Sbjct:   15 KSMGLVFGDIGTSPIYTLTVIMTLTKPDAEHVLGILSLIVWTLIILVSVEYAWLAMSLGRKGEGGTIVLKEILVRLLKSGRQVA-------------------------------FVGFLAFMGVSLLLGDGIITPAISILSAVEGMRLIPGWENLAQGVLIFIAAVIALILFIFQFKGTDKVAGAFGPIMVIWFGALTLSGIVSIA-GTPEVVSAVSPHHAVTFLMHNGLAGFFIL 219          
BLAST of FC878172 vs. ExPASy Swiss-Prot
Match: KUP1_RALSO (Probable potassium transport system protein kup 1 OS=Ralstonia solanacearum GN=kup1 PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.845e-27
Identity = 81/236 (34.32%), Postives = 123/236 (52.12%), Query Frame = 1
Query:  271 LGVVFGGLVTSPLYVY-----PSMPLKSPTEDDYLGIYSIMFWTLTLIGVVKYASIALKADDQGEGGTFALYSLLSRKMDIGFFSAKNLDSNSIFHEGAENKSRLGKFFEKSILARRILLFIAMLGMCMLIGDGILTPAISVLSAMDGIRAPFPSVSKSLVEALSAIVLIVLFLLQKFGTSRVSFLFSPIMGAWTFSTPLVGIYSIIHHYPGIFKALSPHYTFHFFWRKGKEGWLL 963
            +GVVFG + TSPLY       P   +   T+  Y G+ S++FW++TL+  +KY    ++AD+ GEGG  AL +L  R    G   A+ +                           R L+ + +LG  M  GD ++TPAISVLSA++G+    P++ +  V  LS IVL+ LFLLQK GT  V  LF P+M  W     L+G++S++   P I  AL+P +   F +R   + +++
Sbjct:    5 IGVVFGDIGTSPLYALKECFNPEHGVPFSTQTVY-GVLSMLFWSMTLVVSIKYVVFVMRADNNGEGGILALTALAMRASSGG---ARTI---------------------------RTLMLLGLLGASMFYGDAVITPAISVLSAVEGMEVMTPAL-QPWVLPLSLIVLVGLFLLQKHGTHVVGRLFGPVMLFWFVLLGLIGLFSVLRS-PQILVALNPVHAIEFMFRHAVQAFIV 207          
BLAST of FC878172 vs. ExPASy Swiss-Prot
Match: KUP1_LEGPH (Probable potassium transport system protein kup 1 OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=kup1 PE=3 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 2.845e-27
Identity = 78/241 (32.37%), Postives = 126/241 (52.28%), Query Frame = 1
Query:  256 LAYKTLGVVFGGLVTSPLYVYPSMPLKSPTED-DYLGIYSIMFWTLTLIGVVKYASIALKADDQGEGGTFALYSLLSRKMDIGFFSAKNLDSNSIFHEGAENKSRLGKFFEKSILARRILLFIAMLGMCMLIGDGILTPAISVLSAMDGIRAPFPSVSKSL---VEALSAIVLIVLFLLQKFGTSRVSFLFSPIMGAWTFSTPLVGIYSIIHHYPGIFKALSPHYTFHFFWRKGKEGWLLL 966
            LA   LGVVFG + TSPLY         P    + LG+ S++FW+L +I   KY  I  +AD+ GEGG  AL +L+  K                                 S   + +   +A+ G  +L+GDG+LTPAISV+SA++G+     ++S  L   V  +++++L++LF LQ  GT+R+ +LF P++  W  +  ++GI  I+ H P + +A++P++   F   +G  G+ LL
Sbjct:   10 LALGALGVVFGDIGTSPLYALKVTLSGIPINQFNILGVLSLIFWSLIIIVSFKYLMIIFRADNDGEGGILALLALMKHK---------------------------------STKYQPLFYIVAIFGAGLLLGDGMLTPAISVVSAVEGLG----TLSDKLYPYVLPIASVILVLLFSLQAKGTARIGYLFGPLILIWFITIAILGILQIVEH-PVVLQAINPYHAIAFLVDEGLRGYFLL 212          
BLAST of FC878172 vs. ExPASy Swiss-Prot
Match: KUP_XANAC (Probable potassium transport system protein kup OS=Xanthomonas axonopodis pv. citri GN=kup PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.716e-27
Identity = 79/231 (34.20%), Postives = 117/231 (50.65%), Query Frame = 1
Query:  256 LAYKTLGVVFGGLVTSPLYVY-----PSMPLKSPTEDDYLGIYSIMFWTLTLIGVVKYASIALKADDQGEGGTFALYSLLSRKMDIGFFSAKNLDSNSIFHEGAENKSRLGKFFEKSILARRILLFIAMLGMCMLIGDGILTPAISVLSAMDGIRAPFPSVSKSLVEALSAIVLIVLFLLQKFGTSRVSFLFSPIMGAWTFSTPLVGIYSIIHHYPGIFKALSPHYTFHFF 933
            L    +GVVFG + TSPLY       P   L +P  D  LGI S++FW L L+  +KY +  ++AD+ GEGG  AL +L  R +  G        S S++  G                       + + G  +  GDG++TPAISVLSA++G+    P + +  V  ++ +VL +LFL Q+FGT RV   F PI   W F+   +G+Y++    P +  AL+P +   FF
Sbjct:   21 LVIGAIGVVFGDIGTSPLYTLKEAFSPHYGL-TPDHDTVLGILSLVFWALMLVVTLKYVTAIMRADNDGEGGIMALTALAQRTLPGG--------SRSMYVVG----------------------ILGIFGASLFFGDGVITPAISVLSAVEGLEVAAPKL-EPFVVPITLVVLSMLFLAQRFGTERVGKAFGPITLLWFFALGAIGVYNMA-RAPEVLHALNPWWGVRFF 218          
BLAST of FC878172 vs. ExPASy Swiss-Prot
Match: KUP_THIDA (Probable potassium transport system protein kup OS=Thiobacillus denitrificans (strain ATCC 25259) GN=kup PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.716e-27
Identity = 81/240 (33.75%), Postives = 125/240 (52.08%), Query Frame = 1
Query:  256 LAYKTLGVVFGGLVTSPLYVYPSM---PLKSPTEDDYLGIYSIMFWTLTLIGVVKYASIALKADDQGEGGTFALYSLLSRKMDIGFFSAKNLDSNSIFHEGAENKSRLGKFFEKSILARRILLFIAMLGMCMLIGDGILTPAISVLSAMDGIRAPFPSVSKSLVEALSAIVLIVLFLLQKFGTSRVSFLFSPIMGAWTFSTPLVGIYSIIHHYPGIFKALSPHYTFHFFWRKGKEGWLLL 966
            LA   LGVVFG + TSPLY    +      + T+D+ LGI S++FW L L+  +KY  + ++AD++GEGG  AL SL+  +  +                    +SR          AR I++ +  LG  +  GD ++TPAISVLSA++G+    P++   ++  L+  +L+ LF +Q+ GT+ +  LF PIM  W     ++G   I  H P +  AL P +   FF   G  G+L+L
Sbjct:   13 LALGALGVVFGDIGTSPLYTMKEVFGGHHLALTQDNVLGILSLIFWALILVVSLKYVLVIMRADNKGEGGILALLSLVQGQAPL--------------------RSR----------ARWIIMSLGFLGASLFFGDSLITPAISVLSAVEGLEIGAPALHPFIL-PLALGILVGLFAIQRRGTASIGRLFGPIMLLWFAVLGVLGAIGIAKH-PQVLAALLPIHAIQFFMTHGTAGFLIL 220          
BLAST of FC878172 vs. ExPASy Swiss-Prot
Match: KUP_PELPD (Probable potassium transport system protein kup OS=Pelobacter propionicus (strain DSM 2379) GN=kup PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.716e-27
Identity = 75/237 (31.65%), Postives = 122/237 (51.48%), Query Frame = 1
Query:  265 KTLGVVFGGLVTSPLYVYPSM-PLKSPTEDDYLGIYSIMFWTLTLIGVVKYASIALKADDQGEGGTFALYSLLSRKMDIGFFSAKNLDSNSIFHEGAENKSRLGKFFEKSILARRILLFIAMLGMCMLIGDGILTPAISVLSAMDG--IRAPFPSVSKSLVEALSAIVLIVLFLLQKFGTSRVSFLFSPIMGAWTFSTPLVGIYSIIHHYPGIFKALSPHYTFHFFWRKGKEGWLLL 966
            K++G+VFG + TSP+Y    +  L  PT+D+ LGI S++ WTL ++  ++YA +A+    +GEGG   L  +L R +  G   A                                + F+  LG+ +L+GDG++TPAIS+LSA++G  +      +S++ +  ++  + + LF+ Q  GT +V+  F PIM  W  +  L G  S+  H PGI  A+SPH+   F    G  G+ +L
Sbjct:   15 KSMGLVFGDIGTSPIYTLTVIIALTKPTQDNILGIISLIVWTLIILVHLEYAVLAMSLSRKGEGGEIVLREILVRMIKPGRQMA-------------------------------FVTFLTYLGVALLMGDGVITPAISILSAVEGTLLIPGLGGLSQNTLILIAGTIALFLFVFQYKGTDKVARAFGPIMVLWFAALALSGAISVSSH-PGILAAISPHHAISFLMHNGLPGFFVL 219          
The following BLAST results are available for this feature:
BLAST of FC878172 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 336
Match NameE-valueIdentityDescription
KUP1_SYNFM1.668e-2729.96Probable potassium transport system protein kup 1 ... [more]
KUP_GEOLS2.179e-2731.43Probable potassium transport system protein kup OS... [more]
KUP1_RALEH2.179e-2730.71Probable potassium transport system protein kup 1 ... [more]
KUP_XANC52.845e-2734.20Probable potassium transport system protein kup OS... [more]
KUP2_GEOMG2.845e-2732.49Probable potassium transport system protein kup 2 ... [more]
KUP1_RALSO2.845e-2734.32Probable potassium transport system protein kup 1 ... [more]
KUP1_LEGPH2.845e-2732.37Probable potassium transport system protein kup 1 ... [more]
KUP_XANAC3.716e-2734.20Probable potassium transport system protein kup OS... [more]
KUP_THIDA3.716e-2733.75Probable potassium transport system protein kup OS... [more]
KUP_PELPD3.716e-2731.65Probable potassium transport system protein kup OS... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA38CG07RM2 IVIA1 Citrus clementina cDNA clone IC0AAA38CG07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878172 ID=FC878172; Name=FC878172; organism=Citrus clementina; type=EST; length=966bp
AATTACAGAATTGAAATTCTACAAATTATTATTATCTTTTCGGTGCTTTT
TCTTTTTTCTTTTTTTCTCCAAATTATGGACCGGCAACTCGGTGCCGCTG
ACTCGGTTGCCGCGTCCACCTTCTCCGAGGTCGTCGTCGACGTTCAGCCT
TCTTTTAATGCTGACGTCCATTCTCGTCTTCGTCACTCTCGCAACTCCAT
CAACTCCTCTGCTTCTGCTGCAGACAACAAGAAGGGTCGATGGGAGAATT
TGGTACTCGCATACAAGACACTGGGAGTTGTATTTGGAGGACTCGTAACA
TCTCCATTATATGTGTACCCGTCAATGCCGTTGAAGTCTCCAACTGAAGA
TGACTACTTGGGCATTTACAGCATCATGTTTTGGACTCTTACTCTAATTG
GTGTTGTCAAATATGCCAGCATAGCTCTCAAAGCTGATGATCAAGGCGAA
GGAGGAACATTTGCCTTGTATTCCTTACTTAGTCGGAAAATGGATATTGG
GTTCTTTTCTGCTAAAAACCTGGATTCAAACTCTATTTTTCATGAGGGCG
CAGAAAATAAAAGTAGGCTAGGCAAGTTTTTTGAGAAAAGTATTCTTGCC
AGAAGAATATTGCTCTTCATTGCAATGTTAGGAATGTGCATGTTGATTGG
AGATGGAATACTTACACCTGCAATCTCAGTATTATCAGCTATGGATGGCA
TCAGAGCACCTTTTCCTTCTGTCAGTAAATCTTTGGTGGAAGCTCTTTCT
GCTATAGTTCTAATTGTTCTCTTCCTACTGCAAAAGTTTGGCACCTCCCG
AGTGAGTTTTCTTTTCTCCCCCATCATGGGTGCATGGACATTCAGTACTC
CTCTTGTTGGAATTTATAGCATTATACATCACTATCCTGGTATATTCAAA
GCTTTATCCCCACACTACACATTCCATTTCTTTTGGAGGAAAGGAAAAGA
AGGCTGGCTGTTGCTT
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