FC878172

Overview
NameFC878172
Unique NameFC878172
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length966
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC878172 vs. ExPASy Swiss-Prot
Match: KUP_ECOBW (Low affinity potassium transport system protein kup OS=Escherichia coli (strain K12 / BW2952) GN=kup PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.600e-22
Identity = 71/225 (31.56%), Postives = 107/225 (47.56%), Query Frame = 1 
Query:  271 LGVVFGGLVTSPLYVYPSMPLKS----PTEDDYLGIYSIMFWTLTLIGVVKYASIALKADDQGEGGTFALYSLLSRKMDIGFFSAKNLDSNSIFHEGAENKSRLGKFFEKSILARRILLFIAMLGMCMLIGDGILTPAISVLSAMDGIRAPFPSVSKSLVEALSAIVLIVLFLLQKFGTSRVSFLFSPIMGAWTFSTPLVGIYSIIHHYPGIFKALSPHYTFHFF 933
            +GVV+G + TSPLY                D   G  S++FW L  +  +KY +  ++AD+ GEGG   L SL  R                                  S     +L+ + ++G     G+ ++TPAISV+SA++G+    P +   +V  LS IVL +LF++QK GT+ V  LF+PIM  W      +G+ SII + P +  AL+P +  HFF
Sbjct:   17 IGVVYGDIGTSPLYTLRECLSGQFGFGVERDAVFGFLSLIFWLLIFVVSIKYLTFVMRADNAGEGGILTLMSLAGRNT--------------------------------SARTTSMLVIMGLIGGSFFYGEVVITPAISVMSAIEGLEIVAPQLDTWIVP-LSIIVLTLLFMIQKHGTAMVGKLFAPIMLTWFLILAGLGLRSIIAN-PEVLHALNPMWAVHFF 207
[Close]
BLAST of FC878172 vs. ExPASy Swiss-Prot
Match: KUP_ECO8A (Low affinity potassium transport system protein kup OS=Escherichia coli O8 (strain IAI1) GN=kup PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.600e-22
Identity = 71/225 (31.56%), Postives = 107/225 (47.56%), Query Frame = 1 
Query:  271 LGVVFGGLVTSPLYVYPSMPLKS----PTEDDYLGIYSIMFWTLTLIGVVKYASIALKADDQGEGGTFALYSLLSRKMDIGFFSAKNLDSNSIFHEGAENKSRLGKFFEKSILARRILLFIAMLGMCMLIGDGILTPAISVLSAMDGIRAPFPSVSKSLVEALSAIVLIVLFLLQKFGTSRVSFLFSPIMGAWTFSTPLVGIYSIIHHYPGIFKALSPHYTFHFF 933
            +GVV+G + TSPLY                D   G  S++FW L  +  +KY +  ++AD+ GEGG   L SL  R                                  S     +L+ + ++G     G+ ++TPAISV+SA++G+    P +   +V  LS IVL +LF++QK GT+ V  LF+PIM  W      +G+ SII + P +  AL+P +  HFF
Sbjct:   17 IGVVYGDIGTSPLYTLRECLSGQFGFGVERDAVFGFLSLIFWLLIFVVSIKYLTFVMRADNAGEGGILTLMSLAGRNT--------------------------------SARTTSMLVIMGLIGGSFFYGEVVITPAISVMSAIEGLEIVAPQLDTWIVP-LSIIVLTLLFMIQKHGTAMVGKLFAPIMLTWFLILAGLGLRSIIAN-PEVLHALNPMWAVHFF 207
[Close]
BLAST of FC878172 vs. ExPASy Swiss-Prot
Match: KUP_ECO81 (Low affinity potassium transport system protein kup OS=Escherichia coli O81 (strain ED1a) GN=kup PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.600e-22
Identity = 71/225 (31.56%), Postives = 107/225 (47.56%), Query Frame = 1 
Query:  271 LGVVFGGLVTSPLYVYPSMPLKS----PTEDDYLGIYSIMFWTLTLIGVVKYASIALKADDQGEGGTFALYSLLSRKMDIGFFSAKNLDSNSIFHEGAENKSRLGKFFEKSILARRILLFIAMLGMCMLIGDGILTPAISVLSAMDGIRAPFPSVSKSLVEALSAIVLIVLFLLQKFGTSRVSFLFSPIMGAWTFSTPLVGIYSIIHHYPGIFKALSPHYTFHFF 933
            +GVV+G + TSPLY                D   G  S++FW L  +  +KY +  ++AD+ GEGG   L SL  R                                  S     +L+ + ++G     G+ ++TPAISV+SA++G+    P +   +V  LS IVL +LF++QK GT+ V  LF+PIM  W      +G+ SII + P +  AL+P +  HFF
Sbjct:   17 IGVVYGDIGTSPLYTLRECLSGQFGFGVERDAVFGFLSLIFWLLIFVVSIKYLTFVMRADNAGEGGILTLMSLAGRNT--------------------------------SARTTSMLVIMGLIGGSFFYGEVVITPAISVMSAIEGLEIVAPQLDTWIVP-LSIIVLTLLFMIQKHGTAMVGKLFAPIMLTWFLILAGLGLRSIIAN-PEVLHALNPMWAVHFF 207
[Close]
BLAST of FC878172 vs. ExPASy Swiss-Prot
Match: KUP_ECO7I (Low affinity potassium transport system protein kup OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=kup PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.600e-22
Identity = 71/225 (31.56%), Postives = 107/225 (47.56%), Query Frame = 1 
Query:  271 LGVVFGGLVTSPLYVYPSMPLKS----PTEDDYLGIYSIMFWTLTLIGVVKYASIALKADDQGEGGTFALYSLLSRKMDIGFFSAKNLDSNSIFHEGAENKSRLGKFFEKSILARRILLFIAMLGMCMLIGDGILTPAISVLSAMDGIRAPFPSVSKSLVEALSAIVLIVLFLLQKFGTSRVSFLFSPIMGAWTFSTPLVGIYSIIHHYPGIFKALSPHYTFHFF 933
            +GVV+G + TSPLY                D   G  S++FW L  +  +KY +  ++AD+ GEGG   L SL  R                                  S     +L+ + ++G     G+ ++TPAISV+SA++G+    P +   +V  LS IVL +LF++QK GT+ V  LF+PIM  W      +G+ SII + P +  AL+P +  HFF
Sbjct:   17 IGVVYGDIGTSPLYTLRECLSGQFGFGVERDAVFGFLSLIFWLLIFVVSIKYLTFVMRADNAGEGGILTLMSLAGRNT--------------------------------SARTTSMLVIMGLIGGSFFYGEVVITPAISVMSAIEGLEIVAPQLDTWIVP-LSIIVLTLLFMIQKHGTAMVGKLFAPIMLTWFLILAGLGLRSIIAN-PEVLHALNPMWAVHFF 207
[Close]
BLAST of FC878172 vs. ExPASy Swiss-Prot
Match: KUP_ECO55 (Low affinity potassium transport system protein kup OS=Escherichia coli (strain 55989 / EAEC) GN=kup PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.600e-22
Identity = 71/225 (31.56%), Postives = 107/225 (47.56%), Query Frame = 1 
Query:  271 LGVVFGGLVTSPLYVYPSMPLKS----PTEDDYLGIYSIMFWTLTLIGVVKYASIALKADDQGEGGTFALYSLLSRKMDIGFFSAKNLDSNSIFHEGAENKSRLGKFFEKSILARRILLFIAMLGMCMLIGDGILTPAISVLSAMDGIRAPFPSVSKSLVEALSAIVLIVLFLLQKFGTSRVSFLFSPIMGAWTFSTPLVGIYSIIHHYPGIFKALSPHYTFHFF 933
            +GVV+G + TSPLY                D   G  S++FW L  +  +KY +  ++AD+ GEGG   L SL  R                                  S     +L+ + ++G     G+ ++TPAISV+SA++G+    P +   +V  LS IVL +LF++QK GT+ V  LF+PIM  W      +G+ SII + P +  AL+P +  HFF
Sbjct:   17 IGVVYGDIGTSPLYTLRECLSGQFGFGVERDAVFGFLSLIFWLLIFVVSIKYLTFVMRADNAGEGGILTLMSLAGRNT--------------------------------SARTTSMLVIMGLIGGSFFYGEVVITPAISVMSAIEGLEIVAPQLDTWIVP-LSIIVLTLLFMIQKHGTAMVGKLFAPIMLTWFLILAGLGLRSIIAN-PEVLHALNPMWAVHFF 207
[Close]
BLAST of FC878172 vs. ExPASy Swiss-Prot
Match: KUP_ECO45 (Low affinity potassium transport system protein kup OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=kup PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.600e-22
Identity = 71/225 (31.56%), Postives = 107/225 (47.56%), Query Frame = 1 
Query:  271 LGVVFGGLVTSPLYVYPSMPLKS----PTEDDYLGIYSIMFWTLTLIGVVKYASIALKADDQGEGGTFALYSLLSRKMDIGFFSAKNLDSNSIFHEGAENKSRLGKFFEKSILARRILLFIAMLGMCMLIGDGILTPAISVLSAMDGIRAPFPSVSKSLVEALSAIVLIVLFLLQKFGTSRVSFLFSPIMGAWTFSTPLVGIYSIIHHYPGIFKALSPHYTFHFF 933
            +GVV+G + TSPLY                D   G  S++FW L  +  +KY +  ++AD+ GEGG   L SL  R                                  S     +L+ + ++G     G+ ++TPAISV+SA++G+    P +   +V  LS IVL +LF++QK GT+ V  LF+PIM  W      +G+ SII + P +  AL+P +  HFF
Sbjct:   17 IGVVYGDIGTSPLYTLRECLSGQFGFGVERDAVFGFLSLIFWLLIFVVSIKYLTFVMRADNAGEGGILTLMSLAGRNT--------------------------------SARTTSMLVIMGLIGGSFFYGEVVITPAISVMSAIEGLEIVAPQLDTWIVP-LSIIVLTLLFMIQKHGTAMVGKLFAPIMLTWFLILAGLGLRSIIAN-PEVLHALNPMWAVHFF 207
[Close]
BLAST of FC878172 vs. ExPASy Swiss-Prot
Match: KUP_ECO27 (Low affinity potassium transport system protein kup OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=kup PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.600e-22
Identity = 71/225 (31.56%), Postives = 107/225 (47.56%), Query Frame = 1 
Query:  271 LGVVFGGLVTSPLYVYPSMPLKS----PTEDDYLGIYSIMFWTLTLIGVVKYASIALKADDQGEGGTFALYSLLSRKMDIGFFSAKNLDSNSIFHEGAENKSRLGKFFEKSILARRILLFIAMLGMCMLIGDGILTPAISVLSAMDGIRAPFPSVSKSLVEALSAIVLIVLFLLQKFGTSRVSFLFSPIMGAWTFSTPLVGIYSIIHHYPGIFKALSPHYTFHFF 933
            +GVV+G + TSPLY                D   G  S++FW L  +  +KY +  ++AD+ GEGG   L SL  R                                  S     +L+ + ++G     G+ ++TPAISV+SA++G+    P +   +V  LS IVL +LF++QK GT+ V  LF+PIM  W      +G+ SII + P +  AL+P +  HFF
Sbjct:   17 IGVVYGDIGTSPLYTLRECLSGQFGFGVERDAVFGFLSLIFWLLIFVVSIKYLTFVMRADNAGEGGILTLMSLAGRNT--------------------------------SARTTSMLVIMGLIGGSFFYGEVVITPAISVMSAIEGLEIVAPQLDTWIVP-LSIIVLTLLFMIQKHGTAMVGKLFAPIMLTWFLILAGLGLRSIIAN-PEVLHALNPMWAVHFF 207
[Close]
BLAST of FC878172 vs. ExPASy Swiss-Prot
Match: KUP_ECO24 (Low affinity potassium transport system protein kup OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=kup PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.600e-22
Identity = 71/225 (31.56%), Postives = 107/225 (47.56%), Query Frame = 1 
Query:  271 LGVVFGGLVTSPLYVYPSMPLKS----PTEDDYLGIYSIMFWTLTLIGVVKYASIALKADDQGEGGTFALYSLLSRKMDIGFFSAKNLDSNSIFHEGAENKSRLGKFFEKSILARRILLFIAMLGMCMLIGDGILTPAISVLSAMDGIRAPFPSVSKSLVEALSAIVLIVLFLLQKFGTSRVSFLFSPIMGAWTFSTPLVGIYSIIHHYPGIFKALSPHYTFHFF 933
            +GVV+G + TSPLY                D   G  S++FW L  +  +KY +  ++AD+ GEGG   L SL  R                                  S     +L+ + ++G     G+ ++TPAISV+SA++G+    P +   +V  LS IVL +LF++QK GT+ V  LF+PIM  W      +G+ SII + P +  AL+P +  HFF
Sbjct:   17 IGVVYGDIGTSPLYTLRECLSGQFGFGVERDAVFGFLSLIFWLLIFVVSIKYLTFVMRADNAGEGGILTLMSLAGRNT--------------------------------SARTTSMLVIMGLIGGSFFYGEVVITPAISVMSAIEGLEIVAPQLDTWIVP-LSIIVLTLLFMIQKHGTAMVGKLFAPIMLTWFLILAGLGLRSIIAN-PEVLHALNPMWAVHFF 207
[Close]
BLAST of FC878172 vs. ExPASy Swiss-Prot
Match: KUP_SHIF8 (Low affinity potassium transport system protein kup OS=Shigella flexneri serotype 5b (strain 8401) GN=kup PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.701e-22
Identity = 71/225 (31.56%), Postives = 107/225 (47.56%), Query Frame = 1 
Query:  271 LGVVFGGLVTSPLYVYPSMPLKS----PTEDDYLGIYSIMFWTLTLIGVVKYASIALKADDQGEGGTFALYSLLSRKMDIGFFSAKNLDSNSIFHEGAENKSRLGKFFEKSILARRILLFIAMLGMCMLIGDGILTPAISVLSAMDGIRAPFPSVSKSLVEALSAIVLIVLFLLQKFGTSRVSFLFSPIMGAWTFSTPLVGIYSIIHHYPGIFKALSPHYTFHFF 933
            +GVV+G + TSPLY                D   G  S++FW L  +  +KY +  ++AD+ GEGG   L SL  R                                  S     +L+ + ++G     G+ ++TPAISV+SA++G+    P +   +V  LS IVL +LF++QK GT+ V  LF+PIM  W      +G+ SII + P +  AL+P +  HFF
Sbjct:   17 IGVVYGDIGTSPLYTLRECLSGQFGFGLERDAVFGFLSLIFWLLIFVVSIKYLTFVMRADNAGEGGILTLMSLAGRNT--------------------------------SARTTSMLVIMGLIGGSFFYGEVVITPAISVMSAIEGLEIVAPQLDTWIVP-LSIIVLTLLFMIQKHGTAMVGKLFAPIMLTWFLILAGLGLRSIIAN-PEVLHALNPMWAVHFF 207
[Close]
BLAST of FC878172 vs. ExPASy Swiss-Prot
Match: KUP_SODGM (Low affinity potassium transport system protein kup OS=Sodalis glossinidius (strain morsitans) GN=kup PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 6.140e-22
Identity = 72/230 (31.30%), Postives = 114/230 (49.57%), Query Frame = 1 
Query:  271 LGVVFGGLVTSPLYVYPSMPLKSPTEDDY---------LGIYSIMFWTLTLIGVVKYASIALKADDQGEGGTFALYSLLSRKMDIGFFSAKNLDSNSIFHEGAENKSRLGKFFEKSILARRILLFIAMLGMCMLIGDGILTPAISVLSAMDGIRAPFPSVSKSLVEALSAIVLIVLFLLQKFGTSRVSFLFSPIMGAWTFSTPLVGIYSIIHHYPGIFKALSPHYTFHFF 933
            +GVV+G + TSPLY      L+      Y          G  S++FW L LI  +KY    ++AD+ GEGG   L SL  R                  + GA+                 +L+ I ++G     G+ ++TPA+SV+SA++G++   PS+ + +V  LS +VL +LF +QK GT  V  LF+P+M  W  +  ++G+  II++ P +  AL+P +   FF
Sbjct:   17 IGVVYGDIGTSPLYT-----LRECLAGHYGFGVERVAVFGFLSLIFWLLILIVSLKYLLFVMRADNAGEGGILTLMSLAGR------------------NTGAK--------------LTPVLVIIGLIGGSFFYGEVVITPAVSVMSAIEGLQIVAPSLQEFIV-PLSVVVLTLLFFIQKKGTGSVGKLFAPVMLLWFLTLGVLGVRGIIYN-PEVLYALNPKWAIAFF 207
The following BLAST results are available for this feature:
BLAST of FC878172 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 336
Match NameE-valueIdentityDescription
KUP_ECOBW3.600e-2231.56Low affinity potassium transport system protein ku... [more]
KUP_ECO8A3.600e-2231.56Low affinity potassium transport system protein ku... [more]
KUP_ECO813.600e-2231.56Low affinity potassium transport system protein ku... [more]
KUP_ECO7I3.600e-2231.56Low affinity potassium transport system protein ku... [more]
KUP_ECO553.600e-2231.56Low affinity potassium transport system protein ku... [more]
KUP_ECO453.600e-2231.56Low affinity potassium transport system protein ku... [more]
KUP_ECO273.600e-2231.56Low affinity potassium transport system protein ku... [more]
KUP_ECO243.600e-2231.56Low affinity potassium transport system protein ku... [more]
KUP_SHIF84.701e-2231.56Low affinity potassium transport system protein ku... [more]
KUP_SODGM6.140e-2231.30Low affinity potassium transport system protein ku... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA38CG07RM2 IVIA1 Citrus clementina cDNA clone IC0AAA38CG07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878172 ID=FC878172; Name=FC878172; organism=Citrus clementina; type=EST; length=966bp
AATTACAGAATTGAAATTCTACAAATTATTATTATCTTTTCGGTGCTTTT
TCTTTTTTCTTTTTTTCTCCAAATTATGGACCGGCAACTCGGTGCCGCTG
ACTCGGTTGCCGCGTCCACCTTCTCCGAGGTCGTCGTCGACGTTCAGCCT
TCTTTTAATGCTGACGTCCATTCTCGTCTTCGTCACTCTCGCAACTCCAT
CAACTCCTCTGCTTCTGCTGCAGACAACAAGAAGGGTCGATGGGAGAATT
TGGTACTCGCATACAAGACACTGGGAGTTGTATTTGGAGGACTCGTAACA
TCTCCATTATATGTGTACCCGTCAATGCCGTTGAAGTCTCCAACTGAAGA
TGACTACTTGGGCATTTACAGCATCATGTTTTGGACTCTTACTCTAATTG
GTGTTGTCAAATATGCCAGCATAGCTCTCAAAGCTGATGATCAAGGCGAA
GGAGGAACATTTGCCTTGTATTCCTTACTTAGTCGGAAAATGGATATTGG
GTTCTTTTCTGCTAAAAACCTGGATTCAAACTCTATTTTTCATGAGGGCG
CAGAAAATAAAAGTAGGCTAGGCAAGTTTTTTGAGAAAAGTATTCTTGCC
AGAAGAATATTGCTCTTCATTGCAATGTTAGGAATGTGCATGTTGATTGG
AGATGGAATACTTACACCTGCAATCTCAGTATTATCAGCTATGGATGGCA
TCAGAGCACCTTTTCCTTCTGTCAGTAAATCTTTGGTGGAAGCTCTTTCT
GCTATAGTTCTAATTGTTCTCTTCCTACTGCAAAAGTTTGGCACCTCCCG
AGTGAGTTTTCTTTTCTCCCCCATCATGGGTGCATGGACATTCAGTACTC
CTCTTGTTGGAATTTATAGCATTATACATCACTATCCTGGTATATTCAAA
GCTTTATCCCCACACTACACATTCCATTTCTTTTGGAGGAAAGGAAAAGA
AGGCTGGCTGTTGCTT
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