FC878172

Overview
NameFC878172
Unique NameFC878172
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length966
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878172 vs. ExPASy Swiss-Prot
Match: KUP_LACDB (Probable potassium transport system protein kup OS=Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC BAA-365) GN=kup PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 8.866e-21
Identity = 70/244 (28.69%), Postives = 122/244 (50.00%), Query Frame = 1
Query:  271 LGVVFGGLVTSPLYVYPSM-----PLKSPTEDDYLGIYSIMFWTLTLIGVVKYASIALKADDQGEGGTFALYSLLSRKMDIGFFSAKNLDSNSIFHEGAENKSRLGKFFEKSILARRILLFIAMLGMCMLIGDGILTPAISVLSAMDGI------RAPFPSVSKSLVEALSAIVLIVLFLLQKFGTSRVSFLFSPIMGAWTFSTPLVGIYSIIHHYPGIFKALSPHYTFH-FFWRKGKEGWLLL 966
            +G+V+G + TSPLYV  S+      + +   D  +G  S++ WT+TL+  V+   IAL+A + GEGG FALY+L+ +K                                        L++ A++G   ++ DG LTPA++V SA++G+      +   P  +++ V  ++ ++L+VLF +Q+ GT  +   F PIM  W     ++G+ +I  ++  I +AL+P+Y     F    K G+ +L
Sbjct:   19 IGIVYGDIGTSPLYVMKSVIAGNGGINTVGRDLIIGTISLILWTVTLLTTVQTVIIALRATNHGEGGIFALYALIRKK-------------------------------------AAWLVWPALIGGAAILADGTLTPAVTVTSAIEGLKGLEFGKGNVPVSNQTTVLVITIVILLVLFSIQRMGTRIIGKAFGPIMLVWFAFLGVMGLINIGGNW-WILQALNPYYAIKLLFSPYNKAGFAIL 224          
BLAST of FC878172 vs. ExPASy Swiss-Prot
Match: KUP_CITK8 (Low affinity potassium transport system protein kup OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=kup PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 8.866e-21
Identity = 70/225 (31.11%), Postives = 104/225 (46.22%), Query Frame = 1
Query:  271 LGVVFGGLVTSPLYVYPSMPLKS----PTEDDYLGIYSIMFWTLTLIGVVKYASIALKADDQGEGGTFALYSLLSRKMDIGFFSAKNLDSNSIFHEGAENKSRLGKFFEKSILARRILLFIAMLGMCMLIGDGILTPAISVLSAMDGIRAPFPSVSKSLVEALSAIVLIVLFLLQKFGTSRVSFLFSPIMGAWTFSTPLVGIYSIIHHYPGIFKALSPHYTFHFF 933
            +GVV+G + TSPLY                D   G  S++FW L  +  +KY +  ++AD+ GEGG   L SL  R       S                                 L+ + ++G     G+ ++TPAISV+SA++G+    P +   +V  LS IVL +LF++QK GT  V  LF+PIM  W      +G+ SII + P +  AL+P +   FF
Sbjct:   17 IGVVYGDIGTSPLYTLRECLSGQFGFGVERDAVFGFLSLIFWLLIFVVSIKYLTFVMRADNAGEGGILTLMSLAGRNTSARMTST--------------------------------LVIMGLIGGSFFYGEVVITPAISVMSAIEGLEIVAPELDTWVVP-LSIIVLTLLFMIQKHGTGMVGKLFAPIMLTWFLILAGLGLRSIIAN-PDVLHALNPMWAAKFF 207          
BLAST of FC878172 vs. ExPASy Swiss-Prot
Match: KUP_LACDA (Probable potassium transport system protein kup OS=Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC 11842 / DSM 20081) GN=kup PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.975e-20
Identity = 69/244 (28.28%), Postives = 122/244 (50.00%), Query Frame = 1
Query:  271 LGVVFGGLVTSPLYVYPSM-----PLKSPTEDDYLGIYSIMFWTLTLIGVVKYASIALKADDQGEGGTFALYSLLSRKMDIGFFSAKNLDSNSIFHEGAENKSRLGKFFEKSILARRILLFIAMLGMCMLIGDGILTPAISVLSAMDGI------RAPFPSVSKSLVEALSAIVLIVLFLLQKFGTSRVSFLFSPIMGAWTFSTPLVGIYSIIHHYPGIFKALSPHYTFH-FFWRKGKEGWLLL 966
            +G+V+G + TSPLYV  S+      + +   D  +G  S++ WT+TL+  V+   IAL+A + GEGG FALY+L+ +K                                        L++ A++G   ++ DG LTPA++V +A++G+      +   P  +++ V  ++ ++L+VLF +Q+ GT  +   F PIM  W     ++G+ +I  ++  I +AL+P+Y     F    K G+ +L
Sbjct:   10 IGIVYGDIGTSPLYVMKSVIAGNGGINTVGRDLIIGTISLILWTVTLLTTVQTVIIALRATNHGEGGIFALYALIRKK-------------------------------------AAWLVWPALIGGAAILADGTLTPAVTVTTAIEGLKGLEFGKGNVPVSNQTTVLVITIVILLVLFSIQRMGTRIIGKAFGPIMLVWFAFLGVMGLINIGGNW-WILQALNPYYAIKLLFSPYNKAGFAIL 215          
BLAST of FC878172 vs. ExPASy Swiss-Prot
Match: KUP_HERAR (Probable potassium transport system protein kup OS=Herminiimonas arsenicoxydans GN=kup PE=3 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 7.506e-20
Identity = 71/243 (29.22%), Postives = 119/243 (48.97%), Query Frame = 1
Query:  229 KKGRWENLVLAYKTLGVVFGGLVTSPLYVYPSMPLKSP----TEDDYLGIYSIMFWTLTLIGVVKYASIALKADDQGEGGTFALYSLLSRKMDIGFFSAKNLDSNSIFHEGAENKSRLGKFFEKSILARRILLFIAMLGMCMLIGDGILTPAISVLSAMDGIRAPFPSVSKSLVEALSAIVLIVLFLLQKFGTSRVSFLFSPIMGAWTFSTPLVGIYSIIHHYPGIFKALSPHYTFHFFWRKG 945
            KK     L LA   +G+V+G + TSPLY    +  K      T ++ LG+ S++ W L +I  +KY ++ L+A+++GEGG  AL +L          +  ++  NS ++                      L+ + + G  +  GD ++TPAISVLSA++G+     S     V  ++  +L+ L+ LQ  GT+ +   F P+M  W  +  ++G+ +II   P I  AL+P +  HF    G
Sbjct:    6 KKSSLAALTLA--AVGIVYGDIGTSPLYTMKEVFSKEHGLDLTPENLLGVVSLIVWGLIIIVSLKYVTLVLRANNRGEGGIMALMAL----------ALSSVTKNSRWYFP--------------------LMVMGLFGATLFYGDSVITPAISVLSAVEGLGVA-TSAFDPYVVPVTVAILVGLYSLQARGTAGIGKWFGPVMLIWFITLAVMGVVNII-DAPYILHALNPWHALHFLSGNG 214          
BLAST of FC878172 vs. ExPASy Swiss-Prot
Match: KUP3_BRASB (Probable potassium transport system protein kup 3 OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=kup3 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.280e-19
Identity = 66/242 (27.27%), Postives = 111/242 (45.87%), Query Frame = 1
Query:  256 LAYKTLGVVFGGLVTSPLYVYPSMPLKSPTEDD-----YLGIYSIMFWTLTLIGVVKYASIALKADDQGEGGTFALYSLLSRKMDIGFFSAKNLDSNSIFHEGAENKSRLGKFFEKSILARRILLFIAMLGMCMLIGDGILTPAISVLSAMDGIRAPFPSVSKSLVEALSAIVLIVLFLLQKFGTSRVSFLFSPIMGAWTFSTPLVGIYSIIHHYPGIFKALSPHYTFHFFWRKGKEGWLLL 966
            L   ++GVV+G + TSPLY        + +  +      +G+ S++ W L ++  +KY  I L+AD+ GEGGT AL +L  R +  G                                   I++ + ++   +  GD ++TPA+SVLSA++G +    +    +V  L+ I+L  LF +Q  GT++V+  F PIM  W     +     I+ H P +  A++P     F    G  G++ L
Sbjct:   30 LTLGSIGVVYGDIGTSPLYALREAVTAASSSGEAAPHAVMGVISLILWALIVVVTLKYVVILLRADNHGEGGTLALMALAQRGVTRG---------------------------------ASIIVLLGIISGALFYGDAVITPALSVLSAIEGTKLVTAAFDPYVVP-LTVIILAALFAVQARGTAKVAAFFGPIMLIWFLVIGIAAFPPILRH-PEVLWAINPVNAVSFMLHHGIVGFITL 236          
BLAST of FC878172 vs. ExPASy Swiss-Prot
Match: KUP_WIGBR (Low affinity potassium transport system protein kup OS=Wigglesworthia glossinidia brevipalpis GN=kup PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 3.263e-15
Identity = 61/232 (26.29%), Postives = 109/232 (46.98%), Query Frame = 1
Query:  250 LVLAYKTLGVVFGGLVTSPLYVYPSMPLKS-PTEDDYL---GIYSIMFWTLTLIGVVKYASIALKADDQGEGGTFALYSLLSRKMDIGFFSAKNLDSNSIFHEGAENKSRLGKFFEKSILARRILLFIAMLGMCMLIGDGILTPAISVLSAMDGIRAPFPSVSKSLVEALSAIVLIVLFLLQKFGTSRVSFLFSPIMGAWTFSTPLVGIYSIIHHYPGIFKALSPHYTFHFF 933
            L   + T+ V+ G +  SP+Y+     + +   + D L   GI SI+FWTL  I  +KY  + +  ++ GEGG   L S+          +AK ++S S F                      +++ + ++ MC+  GD I+ P+IS++S ++ I   + S  K  +  +S  +   LF +QK   +  + +FS ++  W     L+G+   I+  P I  A++P Y  +FF
Sbjct:   13 LCTIFSTINVLHGLIAISPIYIIKESFVNNLGFKIDKLAIFGILSIIFWTLFFIIFLKYLILIVSINNSGEGGILTLMSI----------TAKKINSKSTF----------------------VIVILGLISMCLFFGDIIIIPSISIISVIEEISIYYLSFEK-FIFIISIAIFTFLFFIQKKIKNEFNNIFSFLISIWFILVGLIGLKG-IYINPEILLAINPKYLINFF 210          
The following BLAST results are available for this feature:
BLAST of FC878172 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 336
Match NameE-valueIdentityDescription
KUP_LACDB8.866e-2128.69Probable potassium transport system protein kup OS... [more]
KUP_CITK88.866e-2131.11Low affinity potassium transport system protein ku... [more]
KUP_LACDA1.975e-2028.28Probable potassium transport system protein kup OS... [more]
KUP_HERAR7.506e-2029.22Probable potassium transport system protein kup OS... [more]
KUP3_BRASB1.280e-1927.27Probable potassium transport system protein kup 3 ... [more]
KUP_WIGBR3.263e-1526.29Low affinity potassium transport system protein ku... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA38CG07RM2 IVIA1 Citrus clementina cDNA clone IC0AAA38CG07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878172 ID=FC878172; Name=FC878172; organism=Citrus clementina; type=EST; length=966bp
AATTACAGAATTGAAATTCTACAAATTATTATTATCTTTTCGGTGCTTTT
TCTTTTTTCTTTTTTTCTCCAAATTATGGACCGGCAACTCGGTGCCGCTG
ACTCGGTTGCCGCGTCCACCTTCTCCGAGGTCGTCGTCGACGTTCAGCCT
TCTTTTAATGCTGACGTCCATTCTCGTCTTCGTCACTCTCGCAACTCCAT
CAACTCCTCTGCTTCTGCTGCAGACAACAAGAAGGGTCGATGGGAGAATT
TGGTACTCGCATACAAGACACTGGGAGTTGTATTTGGAGGACTCGTAACA
TCTCCATTATATGTGTACCCGTCAATGCCGTTGAAGTCTCCAACTGAAGA
TGACTACTTGGGCATTTACAGCATCATGTTTTGGACTCTTACTCTAATTG
GTGTTGTCAAATATGCCAGCATAGCTCTCAAAGCTGATGATCAAGGCGAA
GGAGGAACATTTGCCTTGTATTCCTTACTTAGTCGGAAAATGGATATTGG
GTTCTTTTCTGCTAAAAACCTGGATTCAAACTCTATTTTTCATGAGGGCG
CAGAAAATAAAAGTAGGCTAGGCAAGTTTTTTGAGAAAAGTATTCTTGCC
AGAAGAATATTGCTCTTCATTGCAATGTTAGGAATGTGCATGTTGATTGG
AGATGGAATACTTACACCTGCAATCTCAGTATTATCAGCTATGGATGGCA
TCAGAGCACCTTTTCCTTCTGTCAGTAAATCTTTGGTGGAAGCTCTTTCT
GCTATAGTTCTAATTGTTCTCTTCCTACTGCAAAAGTTTGGCACCTCCCG
AGTGAGTTTTCTTTTCTCCCCCATCATGGGTGCATGGACATTCAGTACTC
CTCTTGTTGGAATTTATAGCATTATACATCACTATCCTGGTATATTCAAA
GCTTTATCCCCACACTACACATTCCATTTCTTTTGGAGGAAAGGAAAAGA
AGGCTGGCTGTTGCTT
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