FC878172

Overview
NameFC878172
Unique NameFC878172
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length966
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878172 vs. ExPASy Swiss-Prot
Match: KUP_XANCP (Probable potassium transport system protein kup OS=Xanthomonas campestris pv. campestris GN=kup PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.155e-28
Identity = 78/245 (31.84%), Postives = 124/245 (50.61%), Query Frame = 1
Query:  247 NLVLAYKTLGVVFGGLVTSPLYVY-----PSMPLKSPTEDDYLGIYSIMFWTLTLIGVVKYASIALKADDQGEGGTFALYSLLSRKMDIGFFSAKNLDSNSIFHEGAENKSRLGKFFEKSILARRILLFIAMLGMCMLIGDGILTPAISVLSAMDGIRAPFPSVSKSLVEALSAIVLIVLFLLQKFGTSRVSFLFSPIMGAWTFSTPLVGIYSIIHHYPGIFKALSPHYTFHFFWRKGKEGWLLL 966
            ++ L    +GVVFG + TSPLY       P   L S   D  LG+ S+ FW L +   +KY +I ++AD++GEGG  AL +L  R +  G  SA                               ++  + + G  +  GDG++TPAISV+ A++G+    PS+   +V  ++ +VL+V+F++Q+FGT +V  +F PI   W  S   +GI++I+   P + KA +P +   FF   G  G  +L
Sbjct:   19 HMALVIGAIGVVFGDIGTSPLYTLKEAFSPHYGLTSD-HDTVLGVLSLAFWALMITVTLKYVTIIMRADNEGEGGIMALMALTQRTLKQGSRSA------------------------------YVVGILGIFGASLFFGDGVITPAISVMGAVEGLEIAAPSLHPFIV-PITVVVLLVVFMVQRFGTEKVGKVFGPITCLWFLSLGAIGIWNIV-DAPEVLKAFNPWWAIRFFMEHGWHGVFIL 230          
BLAST of FC878172 vs. ExPASy Swiss-Prot
Match: KUP_XANC8 (Probable potassium transport system protein kup OS=Xanthomonas campestris pv. campestris (strain 8004) GN=kup PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.155e-28
Identity = 78/245 (31.84%), Postives = 124/245 (50.61%), Query Frame = 1
Query:  247 NLVLAYKTLGVVFGGLVTSPLYVY-----PSMPLKSPTEDDYLGIYSIMFWTLTLIGVVKYASIALKADDQGEGGTFALYSLLSRKMDIGFFSAKNLDSNSIFHEGAENKSRLGKFFEKSILARRILLFIAMLGMCMLIGDGILTPAISVLSAMDGIRAPFPSVSKSLVEALSAIVLIVLFLLQKFGTSRVSFLFSPIMGAWTFSTPLVGIYSIIHHYPGIFKALSPHYTFHFFWRKGKEGWLLL 966
            ++ L    +GVVFG + TSPLY       P   L S   D  LG+ S+ FW L +   +KY +I ++AD++GEGG  AL +L  R +  G  SA                               ++  + + G  +  GDG++TPAISV+ A++G+    PS+   +V  ++ +VL+V+F++Q+FGT +V  +F PI   W  S   +GI++I+   P + KA +P +   FF   G  G  +L
Sbjct:   19 HMALVIGAIGVVFGDIGTSPLYTLKEAFSPHYGLTSD-HDTVLGVLSLAFWALMITVTLKYVTIIMRADNEGEGGIMALMALTQRTLKQGSRSA------------------------------YVVGILGIFGASLFFGDGVITPAISVMGAVEGLEIAAPSLHPFIV-PITVVVLLVVFMVQRFGTEKVGKVFGPITCLWFLSLGAIGIWNIV-DAPEVLKAFNPWWAIRFFMEHGWHGVFIL 230          
BLAST of FC878172 vs. ExPASy Swiss-Prot
Match: KUP_NITMU (Probable potassium transport system protein kup OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=kup PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.155e-28
Identity = 85/240 (35.42%), Postives = 124/240 (51.67%), Query Frame = 1
Query:  253 VLAYKTLGVVFGGLVTSPLYVYPSM--PLK--SPTEDDYLGIYSIMFWTLTLIGVVKYASIALKADDQGEGGTFALYSLLSRKMDIGFFSAKNLDSNSIFHEGAENKSRLGKFFEKSILARRILLFIAMLGMCMLIGDGILTPAISVLSAMDGIRAPFPSVSKSLVEALSAIVLIVLFLLQKFGTSRVSFLFSPIMGAWTFSTPLVGIYSIIHHYPGIFKALSPHYTFHFFWRKGKEGWL 960
            +L    LGVV+G + TSPLYV  ++  P+   + TE + +GI S++FWT+ ++  +KY ++ L+AD+ GEGG  AL SL S                        ++ RL            IL  I   G  +  GDG++TPAISVLSA++G+    P + +  V  ++ +VLI LF+LQ+ GT  +  LF P+M  W  S  LVG+ +I    P I  A +P Y F F       GWL
Sbjct:   19 LLCLAALGVVYGDIGTSPLYVMKTVFDPIHGLAVTESNVIGIISLIFWTIMIVVSLKYVTLILRADNHGEGGIMALLSLAS--------------------SSVTDRPRL----------HNILFLIGAFGAALFFGDGVITPAISVLSAVEGLEVATP-LLQPYVLPITVVVLIALFMLQQRGTGGIGALFGPVMVIWFVSLGLVGLINIA-GAPQIVAAFNPMYAFAFCI---SNGWL 223          
BLAST of FC878172 vs. ExPASy Swiss-Prot
Match: KUP_BURA4 (Probable potassium transport system protein kup OS=Burkholderia ambifaria (strain MC40-6) GN=kup PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.155e-28
Identity = 80/232 (34.48%), Postives = 119/232 (51.29%), Query Frame = 1
Query:  256 LAYKTLGVVFGGLVTSPLYVYPS-------MPLKSPTEDDYLGIYSIMFWTLTLIGVVKYASIALKADDQGEGGTFALYSLLSRKMDIGFFSAKNLDSNSIFHEGAENKSRLGKFFEKSILARRILLFIAMLGMCMLIGDGILTPAISVLSAMDGIRAPFPSVSKSLVEALSAIVLIVLFLLQKFGTSRVSFLFSPIMGAWTFSTPLVGIYSIIHHYPGIFKALSPHYTFHF 930
            LA   +GVVFG + TSPLY           +PL   TE   LG+ S++FW + L+  +KY    ++AD+ GEGG  AL +L  R +D                    +K+R+             L+ + + G CM  GD ++TPAISV+SA++G+    P +S  LV  ++ ++LI LF +Q+ GT+ V  LF PIM  W      +G+Y I    PGI  A++P+Y   F
Sbjct:   24 LAIAAIGVVFGDIGTSPLYALKEAFSPAHGIPL---TESSILGVISLLFWAIILVVGIKYLLFVMRADNNGEGGVLALMALSLRPLD--------------------SKTRVA----------GALMALGIFGACMFYGDAVITPAISVMSAVEGLEIATPHLS-HLVLPITIVILIALFWIQRHGTALVGKLFGPIMVVWFVVIAALGVYHIA-RVPGIIAAINPYYAASF 220          
BLAST of FC878172 vs. ExPASy Swiss-Prot
Match: KUP_ACIAC (Probable potassium transport system protein kup OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=kup PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.155e-28
Identity = 85/241 (35.27%), Postives = 124/241 (51.45%), Query Frame = 1
Query:  256 LAYKTLGVVFGGLVTSPLY----VYPSMPLKSPTEDDYLGIYSIMFWTLTLIGVVKYASIALKADDQGEGGTFALYSLLSRKMDIGFFSAKNLDSNSIFHEGAENKSRLGKFFEKSILARRILLFIAMLGMCMLIGDGILTPAISVLSAMDGIRAPFPSVSKSLVEALSAIVLIVLFLLQKFGTSRVSFLFSPIMGAWTFSTPLVGIYSIIHHYPGIFKALSPHYTFHFFWRKGKEGWLLL 966
            L    +GVV+G + TS LY    V+ S  +    ++ Y G+ SI+FWTLT I  +KY  + L+AD+ GEGG  A+ +L S                    +  ++K RL          R  LL I + G  +  GDG++TPAISVLSA++G+    P   K+++  L+ IVL  LF +QK GTS +   F P+   W  S   +G+  I+ H P I  ALSPH+   F WR     +++L
Sbjct:   11 LTLGAIGVVYGDIGTSVLYAVKEVFGSGHVAFTPQNVY-GVLSILFWTLTTIVSLKYVVLVLRADNNGEGGLIAMLALAS--------------------QAVKDKPRL----------RSALLGIGVFGTSLFYGDGVITPAISVLSAVEGLEVVSPHFGKAVI-PLTLIVLFCLFAVQKRGTSGIGRYFGPVTLVWFTSIAALGVPHIVGH-PEILGALSPHHALGFIWRSPGTSFIIL 218          
BLAST of FC878172 vs. ExPASy Swiss-Prot
Match: KUP3_RALEH (Probable potassium transport system protein kup 3 OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=kup3 PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.155e-28
Identity = 76/241 (31.54%), Postives = 124/241 (51.45%), Query Frame = 1
Query:  256 LAYKTLGVVFGGLVTSPLYVYPSMPLKSP----TEDDYLGIYSIMFWTLTLIGVVKYASIALKADDQGEGGTFALYSLLSRKMDIGFFSAKNLDSNSIFHEGAENKSRLGKFFEKSILARRILLFIAMLGMCMLIGDGILTPAISVLSAMDGIRAPFPSVSKSLVEALSAIVLIVLFLLQKFGTSRVSFLFSPIMGAWTFSTPLVGIYSIIHHYPGIFKALSPHYTFHFFWRKGKEGWLLL 966
            L    +GVVFG + TSPLY       K      + D  LG+ SI+FW + ++  +KY    ++AD+ GEGG  AL +L+ R +                      +SR  K          IL+ + + G CM  GD ++TPAISVLSA++G+    P +S+ ++  ++ ++L  LFL+Q+ GT+ V  LF PIM  W  +   +GI +++   P I K+++P+Y   F      + +++L
Sbjct:   19 LVLGAVGVVFGDIGTSPLYALKECFSKEHGIAFSPDAVLGVISILFWAMIIVVSIKYVVFVMRADNDGEGGVLALMALVLRTV--------------------AQRSRKAK----------ILMMLGIFGACMFYGDAVITPAISVLSAVEGLEIAAPQLSQFVI-PITLVILAALFLIQRHGTAAVGKLFGPIMTTWFVALGALGILNLV-QAPEILKSINPYYAISFLVEHALQAFIVL 227          
BLAST of FC878172 vs. ExPASy Swiss-Prot
Match: KUP3_LEGPH (Probable potassium transport system protein kup 3 OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=kup3 PE=3 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 1.155e-28
Identity = 76/241 (31.54%), Postives = 121/241 (50.21%), Query Frame = 1
Query:  256 LAYKTLGVVFGGLVTSPLYVYPSMPLKS----PTEDDYLGIYSIMFWTLTLIGVVKYASIALKADDQGEGGTFALYSLLSRKMDIGFFSAKNLDSNSIFHEGAENKSRLGKFFEKSILARRILLFIAMLGMCMLIGDGILTPAISVLSAMDGIRAPFPSVSKSLVEALSAIVLIVLFLLQKFGTSRVSFLFSPIMGAWTFSTPLVGIYSIIHHYPGIFKALSPHYTFHFFWRKGKEGWLLL 966
            L+   LG+V+G + TSPLY + ++ L +    P  +  +G  S++ WTL +I  VKY   AL+ D+ GEGG  AL SLLS K+                                    R  ++ + ++G  ++ GDG +TPAISVLSA++G+    PS+ K  V  ++  +LI LF +Q  GT+ +   F P+M  W  +  ++G   +I H P +  A++P Y   F +  G  G+ +L
Sbjct:   20 LSLSALGIVYGDIGTSPLYTFKTVILLAGGGTPAVNTIMGSVSLIIWTLIIIASVKYIHFALRIDNDGEGGILALMSLLSLKLK----------------------------------QRPFIIAVGLMGAALIYGDGTITPAISVLSAVEGLEILSPSL-KYYVLPIAITILITLFAIQSKGTATIGKAFGPVMAFWFLTIGILGARGVIQH-PSVLAAINPIYGLSFLFSNGATGFFIL 224          
BLAST of FC878172 vs. ExPASy Swiss-Prot
Match: KUP1_LEGPL (Probable potassium transport system protein kup 1 OS=Legionella pneumophila (strain Lens) GN=kup1 PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.509e-28
Identity = 79/238 (33.19%), Postives = 122/238 (51.26%), Query Frame = 1
Query:  256 LAYKTLGVVFGGLVTSPLYVYPSMPLKSPTED-DYLGIYSIMFWTLTLIGVVKYASIALKADDQGEGGTFALYSLLSRKMDIGFFSAKNLDSNSIFHEGAENKSRLGKFFEKSILARRILLFIAMLGMCMLIGDGILTPAISVLSAMDGIRAPFPSVSKSLVEALSAIVLIVLFLLQKFGTSRVSFLFSPIMGAWTFSTPLVGIYSIIHHYPGIFKALSPHYTFHFFWRKGKEGWLLL 966
            LA   LGVVFG + TSPLY         P    + LG+ S++FW+L ++   KY  I  +AD+ GEGG  AL +L+  K                                 S   + +   +A+ G  +L+GDG+LTPAISV+SA++G+           V  +++++LI+LF LQ  GT R+ +LF P++  W  +  ++GI  I  H P + KA++P+Y   F   +G +G+LLL
Sbjct:   10 LALGALGVVFGDIGTSPLYALKVTLSGIPINQFNILGVLSLIFWSLIIVVSFKYLMIIFRADNNGEGGILALLALMKHK---------------------------------STKYQPLFYIVAIFGAGLLLGDGMLTPAISVVSAVEGL-GTLSDKLYPYVLPIASLILILLFSLQATGTGRIGYLFGPLILVWFITIAILGILQIAEH-PVVLKAINPYYAIAFLVDEGLQGYLLL 212          
BLAST of FC878172 vs. ExPASy Swiss-Prot
Match: KUP_BURCM (Probable potassium transport system protein kup OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=kup PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.971e-28
Identity = 80/232 (34.48%), Postives = 118/232 (50.86%), Query Frame = 1
Query:  256 LAYKTLGVVFGGLVTSPLYVYPS-------MPLKSPTEDDYLGIYSIMFWTLTLIGVVKYASIALKADDQGEGGTFALYSLLSRKMDIGFFSAKNLDSNSIFHEGAENKSRLGKFFEKSILARRILLFIAMLGMCMLIGDGILTPAISVLSAMDGIRAPFPSVSKSLVEALSAIVLIVLFLLQKFGTSRVSFLFSPIMGAWTFSTPLVGIYSIIHHYPGIFKALSPHYTFHF 930
            LA   +GVVFG + TSPLY           +PL   TE   LG+ S++FW + L+  +KY    ++AD+ GEGG  AL +L  R +D                     K+R+             L+ + + G CM  GD ++TPAISV+SA++G+    P +S  LV  ++ ++LI LF +Q+ GT+ V  LF PIM  W      +G+Y I    PGI  A++P+Y   F
Sbjct:   24 LAIAAIGVVFGDIGTSPLYALKEAFSPAHGIPL---TESSILGVISLLFWAIILVVGIKYLLFVMRADNNGEGGVLALMALSLRPLD--------------------PKTRVA----------GALMALGIFGACMFYGDAVITPAISVMSAVEGLEIATPHLS-HLVLPITIVILIALFWIQRHGTALVGKLFGPIMVVWFIVIAALGVYHIA-RVPGIIAAINPYYAASF 220          
BLAST of FC878172 vs. ExPASy Swiss-Prot
Match: KUP_CHLTE (Probable potassium transport system protein kup OS=Chlorobium tepidum GN=kup PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 2.574e-28
Identity = 86/244 (35.25%), Postives = 125/244 (51.23%), Query Frame = 1
Query:  256 LAYKTLGVVFGGLVTSPLYVYP-------SMPLKSPTEDDYLGIYSIMFWTLTLIGVVKYASIALKADDQGEGGTFALYSLLSRKMDIGFFSAKNLDSNSIFHEGAENKSRLGKFFEKSILARRILLFIAMLGMCMLIGDGILTPAISVLSAMDGIRAPFPSVSKSLVEALSAIVLIVLFLLQKFGTSRVSFLFSPIMGAWTFSTPLVGIYSIIHHYPGIFKALSPHYTFHFFWRKGKEGWLLL 966
            ++   LGVVFG + TSPLY          S+P+ +P   + LG+ S++ W L LI  +KY +  +KAD++GEGG  AL +L                   I     +NKS            R IL+ + + G  +L GDG++TP+ISVLSA++GI+   PS    LV  ++  +L  LFL Q  GT++V   F PI+  W  S  L G+  I+  YP I KA+ P Y   F      +G+L+L
Sbjct:    1 MSLAALGVVFGDIGTSPLYAIRECFHGEFSIPVNTP---NVLGVLSLLIWALLLIVTLKYLTFIMKADNEGEGGILALTAL-------------------IISHSKKNKSE-----------RWILVSLGLFGAALLYGDGMITPSISVLSAVEGIQIIAPSFG-PLVIPVTIAILAGLFLFQHHGTAKVGSFFGPIILLWFTSIGLCGLVEIV-KYPAILKAVFPWYGLEFLVNNHAKGFLVL 209          
The following BLAST results are available for this feature:
BLAST of FC878172 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 336
Match NameE-valueIdentityDescription
KUP_XANCP1.155e-2831.84Probable potassium transport system protein kup OS... [more]
KUP_XANC81.155e-2831.84Probable potassium transport system protein kup OS... [more]
KUP_NITMU1.155e-2835.42Probable potassium transport system protein kup OS... [more]
KUP_BURA41.155e-2834.48Probable potassium transport system protein kup OS... [more]
KUP_ACIAC1.155e-2835.27Probable potassium transport system protein kup OS... [more]
KUP3_RALEH1.155e-2831.54Probable potassium transport system protein kup 3 ... [more]
KUP3_LEGPH1.155e-2831.54Probable potassium transport system protein kup 3 ... [more]
KUP1_LEGPL1.509e-2833.19Probable potassium transport system protein kup 1 ... [more]
KUP_BURCM1.971e-2834.48Probable potassium transport system protein kup OS... [more]
KUP_CHLTE2.574e-2835.25Probable potassium transport system protein kup OS... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA38CG07RM2 IVIA1 Citrus clementina cDNA clone IC0AAA38CG07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878172 ID=FC878172; Name=FC878172; organism=Citrus clementina; type=EST; length=966bp
AATTACAGAATTGAAATTCTACAAATTATTATTATCTTTTCGGTGCTTTT
TCTTTTTTCTTTTTTTCTCCAAATTATGGACCGGCAACTCGGTGCCGCTG
ACTCGGTTGCCGCGTCCACCTTCTCCGAGGTCGTCGTCGACGTTCAGCCT
TCTTTTAATGCTGACGTCCATTCTCGTCTTCGTCACTCTCGCAACTCCAT
CAACTCCTCTGCTTCTGCTGCAGACAACAAGAAGGGTCGATGGGAGAATT
TGGTACTCGCATACAAGACACTGGGAGTTGTATTTGGAGGACTCGTAACA
TCTCCATTATATGTGTACCCGTCAATGCCGTTGAAGTCTCCAACTGAAGA
TGACTACTTGGGCATTTACAGCATCATGTTTTGGACTCTTACTCTAATTG
GTGTTGTCAAATATGCCAGCATAGCTCTCAAAGCTGATGATCAAGGCGAA
GGAGGAACATTTGCCTTGTATTCCTTACTTAGTCGGAAAATGGATATTGG
GTTCTTTTCTGCTAAAAACCTGGATTCAAACTCTATTTTTCATGAGGGCG
CAGAAAATAAAAGTAGGCTAGGCAAGTTTTTTGAGAAAAGTATTCTTGCC
AGAAGAATATTGCTCTTCATTGCAATGTTAGGAATGTGCATGTTGATTGG
AGATGGAATACTTACACCTGCAATCTCAGTATTATCAGCTATGGATGGCA
TCAGAGCACCTTTTCCTTCTGTCAGTAAATCTTTGGTGGAAGCTCTTTCT
GCTATAGTTCTAATTGTTCTCTTCCTACTGCAAAAGTTTGGCACCTCCCG
AGTGAGTTTTCTTTTCTCCCCCATCATGGGTGCATGGACATTCAGTACTC
CTCTTGTTGGAATTTATAGCATTATACATCACTATCCTGGTATATTCAAA
GCTTTATCCCCACACTACACATTCCATTTCTTTTGGAGGAAAGGAAAAGA
AGGCTGGCTGTTGCTT
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