FC878172

Overview
NameFC878172
Unique NameFC878172
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length966
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878172 vs. ExPASy Swiss-Prot
Match: KUP_FLAJ1 (Probable potassium transport system protein kup OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) GN=kup PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 3.361e-28
Identity = 77/222 (34.68%), Postives = 120/222 (54.05%), Query Frame = 1
Query:  268 TLGVVFGGLVTSPLYVYPSMPLKSPT--EDDYLGIYSIMFWTLTLIGVVKYASIALKADDQGEGGTFALYSLLSRKMDIGFFSAKNLDSNSIFHEGAENKSRLGKFFEKSILARRILLFIAMLGMCMLIGDGILTPAISVLSAMDGIRAPFPSVSKSLVEALSAIVLIVLFLLQKFGTSRVSFLFSPIMGAWTFSTPLVGIYSIIHHYPGIFKALSPHYTFH 927
            TLG+++G + TSPLYV  ++ L + T   D  LG  S +FWTLTL   +KY  I L AD+ GEGG FALY+L+                          K+++           + L+  A++G   L+ DGI+TP IS+ SA++GIRA +P++    +  +   +L +LF +Q+FGT  V   F+P+M  W      +G   I+ H+P + KA++P+Y +H
Sbjct:   20 TLGIIYGDIGTSPLYVMKAI-LGNHTINADIVLGGISCVFWTLTLQTTIKYVLITLSADNHGEGGIFALYALVK-------------------------KTKI-----------QWLIVPAIIGGSALLADGIITPPISISSAVEGIRAFYPTMQTQTIVYIVITILFILFTIQQFGTKLVGKFFAPMMLIWFAMLGTLGFIQIM-HFPEVIKAINPYYAYH 203          
BLAST of FC878172 vs. ExPASy Swiss-Prot
Match: KUP_CHLPD (Probable potassium transport system protein kup OS=Chlorobium phaeobacteroides (strain DSM 266) GN=kup PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 5.733e-28
Identity = 84/244 (34.43%), Postives = 132/244 (54.10%), Query Frame = 1
Query:  256 LAYKTLGVVFGGLVTSPLYVYP-------SMPLKSPTEDDYLGIYSIMFWTLTLIGVVKYASIALKADDQGEGGTFALYSLLSRKMDIGFFSAKNLDSNSIFHEGAENKSRLGKFFEKSILARRILLFIAMLGMCMLIGDGILTPAISVLSAMDGIRAPFPSVSKSLVEALSAIVLIVLFLLQKFGTSRVSFLFSPIMGAWTFSTPLVGIYSIIHHYPGIFKALSPHYTFHFFWRKGKEGWLLL 966
            ++   LGVVFG + TSPLY          S+P+   ++ + LG+ S++FW L LI  +KY +  +KAD++GEGG  AL +L+                  + H     K+R  ++F         L+ I + G  +L GDG++TPAISVLSA++G++   P+  K LV  ++ I+L  LFL Q  GT+RV  LF P++  W     ++G+  I+  YP I +A+ P Y F F      +G+++L
Sbjct:   25 ISLAALGVVFGDIGTSPLYAIRECFHGDYSIPV---SQQNVLGVLSLIFWALVLIVSLKYLTFIMKADNEGEGGILALTALI------------------VAHS---KKNRHERWF---------LVGIGLFGASLLYGDGMITPAISVLSAVEGLQIIAPAF-KDLVIPITVIILTGLFLYQHNGTARVGALFGPVILLWFAVIGVLGLVEIV-RYPEILRAVLPWYGFSFLLNNHLQGFMVL 233          
BLAST of FC878172 vs. ExPASy Swiss-Prot
Match: KUP1_LEGPA (Probable potassium transport system protein kup 1 OS=Legionella pneumophila (strain Paris) GN=kup1 PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 5.733e-28
Identity = 78/241 (32.37%), Postives = 126/241 (52.28%), Query Frame = 1
Query:  256 LAYKTLGVVFGGLVTSPLYVYPSMPLKSPTED-DYLGIYSIMFWTLTLIGVVKYASIALKADDQGEGGTFALYSLLSRKMDIGFFSAKNLDSNSIFHEGAENKSRLGKFFEKSILARRILLFIAMLGMCMLIGDGILTPAISVLSAMDGIRAPFPSVSKSL---VEALSAIVLIVLFLLQKFGTSRVSFLFSPIMGAWTFSTPLVGIYSIIHHYPGIFKALSPHYTFHFFWRKGKEGWLLL 966
            LA   LG+VFG + TSPLY         P    + LG+ S++FW+L ++   KY  I  +AD+ GEGG  AL +L+  K                                 S   + +   +A+ G  +L+GDG+LTPAISV+SA++G+     ++S  L   V  +++++L++LF LQ  GT+R+ +LF P++  W  +  ++GI  I+ H P + KA++P+Y   F   +G  G+ LL
Sbjct:   10 LALGALGIVFGDIGTSPLYALKVTLSGIPINQFNILGVLSLIFWSLIIVVSFKYLMIIFRADNDGEGGILALLALMKHK---------------------------------STKYQPVFYIVAIFGAGLLLGDGMLTPAISVVSAVEGLG----TLSDKLYPYVLPIASLILVLLFSLQAKGTARIGYLFGPLILIWFITIAILGILQILEH-PVVLKAINPYYAIAFLVDEGLRGYFLL 212          
BLAST of FC878172 vs. ExPASy Swiss-Prot
Match: KUP_BURPS (Probable potassium transport system protein kup OS=Burkholderia pseudomallei GN=kup PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 7.488e-28
Identity = 79/232 (34.05%), Postives = 120/232 (51.72%), Query Frame = 1
Query:  256 LAYKTLGVVFGGLVTSPLYVYPS-------MPLKSPTEDDYLGIYSIMFWTLTLIGVVKYASIALKADDQGEGGTFALYSLLSRKMDIGFFSAKNLDSNSIFHEGAENKSRLGKFFEKSILARRILLFIAMLGMCMLIGDGILTPAISVLSAMDGIRAPFPSVSKSLVEALSAIVLIVLFLLQKFGTSRVSFLFSPIMGAWTFSTPLVGIYSIIHHYPGIFKALSPHYTFHF 930
            LA   +GVVFG + TSPLY           +PL   T    LG+ S++FW + L+  +KY    ++AD+ GEGG  AL +L  R ++                     KSR+            +++ + + G CM  GD ++TPAISV+SA++G+    P +S  LV  ++ ++LI LF +Q+ GT+ V  LF PIM  W  +  ++GIY I    P I  A++P+Y F F
Sbjct:   17 LAIAAIGVVFGDIGTSPLYSLKEAFSPAHGIPL---TPSAILGVISLLFWAIILVVGIKYVLFVMRADNNGEGGVLALMALSLRPLN--------------------PKSRI----------TGLMMALGIFGACMFYGDAVITPAISVMSAVEGLEVATPQLS-HLVLPITIVILIALFWIQRHGTATVGKLFGPIMVLWFVTIAVLGIYHIA-RAPMIVSAINPYYAFSF 213          
BLAST of FC878172 vs. ExPASy Swiss-Prot
Match: KUP3_LEGPC (Probable potassium transport system protein kup 3 OS=Legionella pneumophila (strain Corby) GN=kup3 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 9.780e-28
Identity = 75/241 (31.12%), Postives = 121/241 (50.21%), Query Frame = 1
Query:  256 LAYKTLGVVFGGLVTSPLYVYPSMPLKS----PTEDDYLGIYSIMFWTLTLIGVVKYASIALKADDQGEGGTFALYSLLSRKMDIGFFSAKNLDSNSIFHEGAENKSRLGKFFEKSILARRILLFIAMLGMCMLIGDGILTPAISVLSAMDGIRAPFPSVSKSLVEALSAIVLIVLFLLQKFGTSRVSFLFSPIMGAWTFSTPLVGIYSIIHHYPGIFKALSPHYTFHFFWRKGKEGWLLL 966
            L+   LG+V+G + TSPLY + ++ L +    P     +G  S++ WTL +I  VKY   AL+ D+ GEGG  AL SLLS K+                                    +  ++ + ++G  ++ GDG +TPAISVLSA++G+    PS+ K  V  ++  +LI LF +Q  GT+ +   F P+M  W  +  ++G   +I H P +  A++P Y  +F +  G  G+ +L
Sbjct:   20 LSLSALGIVYGDIGTSPLYTFKTVILLAGGGTPDVTTIMGSASLIIWTLIIIASVKYICFALRIDNDGEGGILALMSLLSLKLK----------------------------------QKPFIIAVGLMGAALIYGDGTITPAISVLSAVEGLEILSPSL-KYYVLPIAITILITLFAIQSKGTATIGKAFGPVMAFWFLTIGILGAREVIQH-PFVLAAINPVYGLNFLFSNGATGFFIL 224          
BLAST of FC878172 vs. ExPASy Swiss-Prot
Match: KUP3_LEGPA (Probable potassium transport system protein kup 3 OS=Legionella pneumophila (strain Paris) GN=kup3 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 9.780e-28
Identity = 75/241 (31.12%), Postives = 121/241 (50.21%), Query Frame = 1
Query:  256 LAYKTLGVVFGGLVTSPLYVYPSMPLKS----PTEDDYLGIYSIMFWTLTLIGVVKYASIALKADDQGEGGTFALYSLLSRKMDIGFFSAKNLDSNSIFHEGAENKSRLGKFFEKSILARRILLFIAMLGMCMLIGDGILTPAISVLSAMDGIRAPFPSVSKSLVEALSAIVLIVLFLLQKFGTSRVSFLFSPIMGAWTFSTPLVGIYSIIHHYPGIFKALSPHYTFHFFWRKGKEGWLLL 966
            L+   LG+V+G + TSPLY + ++ L +    P     +G  S++ WTL +I  VKY   AL+ D+ GEGG  AL SLLS K+                                    +  ++ + ++G  ++ GDG +TPAISVLSA++G+    PS+ K  V  ++  +LI LF +Q  GT+ +   F P+M  W  +  ++G   +I H P +  A++P Y  +F +  G  G+ +L
Sbjct:   20 LSLSALGIVYGDIGTSPLYTFKTVILLAGGGTPDVTTIMGSASLIIWTLIIIASVKYICFALRIDNDGEGGILALMSLLSLKLK----------------------------------QKPFIIAVGLMGAALIYGDGTITPAISVLSAVEGLEILSPSL-KYYVLPIAITILITLFAIQSKGTTTIGKAFGPVMAFWFLTIGILGARGVIQH-PFVLAAINPVYGLNFLFSNGATGFFIL 224          
BLAST of FC878172 vs. ExPASy Swiss-Prot
Match: KUP1_LEGPC (Probable potassium transport system protein kup 1 OS=Legionella pneumophila (strain Corby) GN=kup1 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 9.780e-28
Identity = 78/241 (32.37%), Postives = 126/241 (52.28%), Query Frame = 1
Query:  256 LAYKTLGVVFGGLVTSPLYVYPSMPLKSPTED-DYLGIYSIMFWTLTLIGVVKYASIALKADDQGEGGTFALYSLLSRKMDIGFFSAKNLDSNSIFHEGAENKSRLGKFFEKSILARRILLFIAMLGMCMLIGDGILTPAISVLSAMDGIRAPFPSVSKSL---VEALSAIVLIVLFLLQKFGTSRVSFLFSPIMGAWTFSTPLVGIYSIIHHYPGIFKALSPHYTFHFFWRKGKEGWLLL 966
            LA   LGVVFG + TSPLY         P    + LG+ S++FW+L ++   KY  I  +AD+ GEGG  AL +L+  K                                 S   + +   +A+ G  +L+GDG+LTPAISV+SA++G+     ++S  L   V  +++++L++LF LQ  GT+R+ +LF P++  W  +  ++GI  I+ H P + +A++P+Y   F   +G  G+ LL
Sbjct:   17 LALGALGVVFGDIGTSPLYALKVTLSGIPINQFNILGVLSLIFWSLIIVVSFKYLMIIFRADNDGEGGILALLALMKHK---------------------------------STKYQPLFYIVAIFGAGLLLGDGMLTPAISVVSAVEGLG----TLSDKLYPYVLPIASVILVLLFSLQAKGTARIGYLFGPLILIWFITIAILGILQIVEH-PVVLQAINPYYAIAFLVDEGLRGYFLL 219          
BLAST of FC878172 vs. ExPASy Swiss-Prot
Match: KUP_BURP6 (Probable potassium transport system protein kup OS=Burkholderia pseudomallei (strain 668) GN=kup PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.277e-27
Identity = 79/232 (34.05%), Postives = 119/232 (51.29%), Query Frame = 1
Query:  256 LAYKTLGVVFGGLVTSPLYVYPS-------MPLKSPTEDDYLGIYSIMFWTLTLIGVVKYASIALKADDQGEGGTFALYSLLSRKMDIGFFSAKNLDSNSIFHEGAENKSRLGKFFEKSILARRILLFIAMLGMCMLIGDGILTPAISVLSAMDGIRAPFPSVSKSLVEALSAIVLIVLFLLQKFGTSRVSFLFSPIMGAWTFSTPLVGIYSIIHHYPGIFKALSPHYTFHF 930
            LA   +GVVFG + TSPLY           +PL   T    LG+ S++FW + L+  +KY    ++AD+ GEGG  AL +L  R ++                     KSR+            +++ + + G CM  GD ++TPAISV+SA++G+    P +S  LV  ++ ++LI LF +Q+ GT+ V  LF PIM  W  +   +GIY I    P I  A++P+Y F F
Sbjct:   17 LAIAAIGVVFGDIGTSPLYSLKEAFSPAHGIPL---TPSAILGVISLLFWAIILVVGIKYVLFVMRADNNGEGGVLALMALSLRPLN--------------------PKSRI----------TGLMMALGIFGACMFYGDAVITPAISVMSAVEGLEVATPQLS-HLVLPITIVILIALFWIQRHGTATVGKLFGPIMVLWFVTIAALGIYHIA-RAPMIVSAINPYYAFSF 213          
BLAST of FC878172 vs. ExPASy Swiss-Prot
Match: KUP_BURP1 (Probable potassium transport system protein kup OS=Burkholderia pseudomallei (strain 1710b) GN=kup PE=3 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 1.277e-27
Identity = 79/232 (34.05%), Postives = 119/232 (51.29%), Query Frame = 1
Query:  256 LAYKTLGVVFGGLVTSPLYVYPS-------MPLKSPTEDDYLGIYSIMFWTLTLIGVVKYASIALKADDQGEGGTFALYSLLSRKMDIGFFSAKNLDSNSIFHEGAENKSRLGKFFEKSILARRILLFIAMLGMCMLIGDGILTPAISVLSAMDGIRAPFPSVSKSLVEALSAIVLIVLFLLQKFGTSRVSFLFSPIMGAWTFSTPLVGIYSIIHHYPGIFKALSPHYTFHF 930
            LA   +GVVFG + TSPLY           +PL   T    LG+ S++FW + L+  +KY    ++AD+ GEGG  AL +L  R ++                     KSR+            +++ + + G CM  GD ++TPAISV+SA++G+    P +S  LV  ++ ++LI LF +Q+ GT+ V  LF PIM  W  +   +GIY I    P I  A++P+Y F F
Sbjct:   17 LAIAAIGVVFGDIGTSPLYSLKEAFSPAHGIPL---TPSAILGVISLLFWAIILVVGIKYVLFVMRADNNGEGGVLALMALSLRPLN--------------------PKSRI----------TGLMMALGIFGACMFYGDAVITPAISVMSAVEGLEVATPQLS-HLVLPITIVILIALFWIQRHGTATVGKLFGPIMVLWFVTIAALGIYHIA-RAPMIVSAINPYYAFSF 213          
BLAST of FC878172 vs. ExPASy Swiss-Prot
Match: KUP_BURP0 (Probable potassium transport system protein kup OS=Burkholderia pseudomallei (strain 1106a) GN=kup PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.277e-27
Identity = 79/232 (34.05%), Postives = 119/232 (51.29%), Query Frame = 1
Query:  256 LAYKTLGVVFGGLVTSPLYVYPS-------MPLKSPTEDDYLGIYSIMFWTLTLIGVVKYASIALKADDQGEGGTFALYSLLSRKMDIGFFSAKNLDSNSIFHEGAENKSRLGKFFEKSILARRILLFIAMLGMCMLIGDGILTPAISVLSAMDGIRAPFPSVSKSLVEALSAIVLIVLFLLQKFGTSRVSFLFSPIMGAWTFSTPLVGIYSIIHHYPGIFKALSPHYTFHF 930
            LA   +GVVFG + TSPLY           +PL   T    LG+ S++FW + L+  +KY    ++AD+ GEGG  AL +L  R ++                     KSR+            +++ + + G CM  GD ++TPAISV+SA++G+    P +S  LV  ++ ++LI LF +Q+ GT+ V  LF PIM  W  +   +GIY I    P I  A++P+Y F F
Sbjct:   17 LAIAAIGVVFGDIGTSPLYSLKEAFSPAHGIPL---TPSAILGVISLLFWAIILVVGIKYVLFVMRADNNGEGGVLALMALSLRPLN--------------------PKSRI----------TGLMMALGIFGACMFYGDAVITPAISVMSAVEGLEVATPQLS-HLVLPITIVILIALFWIQRHGTATVGKLFGPIMVLWFVTIAALGIYHIA-RAPMIVSAINPYYAFSF 213          
The following BLAST results are available for this feature:
BLAST of FC878172 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 336
Match NameE-valueIdentityDescription
KUP_FLAJ13.361e-2834.68Probable potassium transport system protein kup OS... [more]
KUP_CHLPD5.733e-2834.43Probable potassium transport system protein kup OS... [more]
KUP1_LEGPA5.733e-2832.37Probable potassium transport system protein kup 1 ... [more]
KUP_BURPS7.488e-2834.05Probable potassium transport system protein kup OS... [more]
KUP3_LEGPC9.780e-2831.12Probable potassium transport system protein kup 3 ... [more]
KUP3_LEGPA9.780e-2831.12Probable potassium transport system protein kup 3 ... [more]
KUP1_LEGPC9.780e-2832.37Probable potassium transport system protein kup 1 ... [more]
KUP_BURP61.277e-2734.05Probable potassium transport system protein kup OS... [more]
KUP_BURP11.277e-2734.05Probable potassium transport system protein kup OS... [more]
KUP_BURP01.277e-2734.05Probable potassium transport system protein kup OS... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA38CG07RM2 IVIA1 Citrus clementina cDNA clone IC0AAA38CG07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878172 ID=FC878172; Name=FC878172; organism=Citrus clementina; type=EST; length=966bp
AATTACAGAATTGAAATTCTACAAATTATTATTATCTTTTCGGTGCTTTT
TCTTTTTTCTTTTTTTCTCCAAATTATGGACCGGCAACTCGGTGCCGCTG
ACTCGGTTGCCGCGTCCACCTTCTCCGAGGTCGTCGTCGACGTTCAGCCT
TCTTTTAATGCTGACGTCCATTCTCGTCTTCGTCACTCTCGCAACTCCAT
CAACTCCTCTGCTTCTGCTGCAGACAACAAGAAGGGTCGATGGGAGAATT
TGGTACTCGCATACAAGACACTGGGAGTTGTATTTGGAGGACTCGTAACA
TCTCCATTATATGTGTACCCGTCAATGCCGTTGAAGTCTCCAACTGAAGA
TGACTACTTGGGCATTTACAGCATCATGTTTTGGACTCTTACTCTAATTG
GTGTTGTCAAATATGCCAGCATAGCTCTCAAAGCTGATGATCAAGGCGAA
GGAGGAACATTTGCCTTGTATTCCTTACTTAGTCGGAAAATGGATATTGG
GTTCTTTTCTGCTAAAAACCTGGATTCAAACTCTATTTTTCATGAGGGCG
CAGAAAATAAAAGTAGGCTAGGCAAGTTTTTTGAGAAAAGTATTCTTGCC
AGAAGAATATTGCTCTTCATTGCAATGTTAGGAATGTGCATGTTGATTGG
AGATGGAATACTTACACCTGCAATCTCAGTATTATCAGCTATGGATGGCA
TCAGAGCACCTTTTCCTTCTGTCAGTAAATCTTTGGTGGAAGCTCTTTCT
GCTATAGTTCTAATTGTTCTCTTCCTACTGCAAAAGTTTGGCACCTCCCG
AGTGAGTTTTCTTTTCTCCCCCATCATGGGTGCATGGACATTCAGTACTC
CTCTTGTTGGAATTTATAGCATTATACATCACTATCCTGGTATATTCAAA
GCTTTATCCCCACACTACACATTCCATTTCTTTTGGAGGAAAGGAAAAGA
AGGCTGGCTGTTGCTT
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