FC878173

Overview
NameFC878173
Unique NameFC878173
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length936
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878173 vs. ExPASy Swiss-Prot
Match: PEPA_CHICK (Pepsin A OS=Gallus gallus GN=PGA PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 8.943e-31
Identity = 83/212 (39.15%), Postives = 107/212 (50.47%), Query Frame = 3
Query:  300 LNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDXXXXXXXXXXXXXXDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAI 935
            + N+MDA Y+G +SIGTP Q F+VIFDTGSSNLWVPS  C  S                   N T   I YGTG++SG    D V V  + V+NQ F  +  E    F    FDGILGL F  IS   A PV+ NM+ Q LV + +FS +L++D              DP++      +VP++ + YWQ  M  V + G     C   C AI
Sbjct:   51 MTNYMDASYYGTISIGTPQQDFSVIFDTGSSNLWVPSIYCKSSACSNHKRFDPSKSSTYVSTNET-VYIAYGTGSMSGILGYDTVAVSSIDVQNQIFGLSETEPGSFFYYCNFDGILGLAFPSISSSGATPVFDNMMSQHLVAQDLFSVYLSKD--GETGSFVLFGGIDPNYTTKGIYWVPLSAETYWQITMDRVTV-GNKYVACFFTCQAI 258          
BLAST of FC878173 vs. ExPASy Swiss-Prot
Match: PEPA_RHIFE (Pepsin A OS=Rhinolophus ferrumequinum GN=PGA PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.168e-30
Identity = 76/212 (35.85%), Postives = 108/212 (50.94%), Query Frame = 3
Query:  300 LNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDXXXXXXXXXXXXXXDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAI 935
            L N+MD +YFG + IGTP Q FTVIFDTGSSNLWVPS  C                      N    ++ YGTG+++G    D V+VG +   NQ F  +  E       A FDGILGL +  I+   A PV+ N+ +QGLV + +FS +L+ +              D  ++ G   +VP++ + YWQ  +  + ++G+    CS  C AI
Sbjct:   66 LENYMDMEYFGTIGIGTPPQEFTVIFDTGSSNLWVPSVYCSSPACSNHNRFNPQQSSTYQGTN-QKLSVAYGTGSMTGILGYDTVQVGGITDTNQIFGLSETEPGSFLYYAPFDGILGLAYPSIASSGATPVFDNIWNQGLVSQDLFSVYLSSN--DQGGSVVMFGGIDSSYFTGNLNWVPLSSETYWQITVDSITMNGQVIA-CSGSCQAI 273          
BLAST of FC878173 vs. ExPASy Swiss-Prot
Match: PEP2B_GADMO (Pepsin-2B OS=Gadus morhua PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 5.797e-30
Identity = 77/212 (36.32%), Postives = 106/212 (50.00%), Query Frame = 3
Query:  300 LNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDXXXXXXXXXXXXXXDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAI 935
            + N  D +Y+G +SIGTP ++F VIFDTGSSNLWV S+ C                       G +  + YGTG + G   QD V VG     NQ+  E+  E      AA FDGILGL +  I+   A+PV+ NM  Q LV++ +FSF+L+                D  HY G   ++PVT + YWQ  +  + ++G+T      GC AI
Sbjct:    6 MKNEADTEYYGVISIGTPPESFKVIFDTGSSNLWVSSSHCSAQACSNHNKFKPRQSSTYV-ETGKTVDLTYGTGGMRGILGQDTVSVGGGSDPNQELGESQTEPGPFQAAAPFDGILGLAYPSIAAAGAVPVFDNMGSQSLVEKDLFSFYLS--GGGANGSEVMLGGVDNSHYTGSIHWIPVTAEKYWQVALDGITVNGQTA--ACEGCQAI 212          
BLAST of FC878173 vs. ExPASy Swiss-Prot
Match: PEPAF_RABIT (Pepsin F OS=Oryctolagus cuniculus PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.877e-29
Identity = 78/228 (34.21%), Postives = 112/228 (49.12%), Query Frame = 3
Query:  252 YNLHGSLGDSDTDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDXXXXXXXXXXXXXXDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAI 935
            Y L     D D     L N++D  Y G +SIGTP Q F V+ DTGS++LWVPS  C  S                   +G    I YG+G +SGF + D V++  LV   Q F  + +E       A FDGILGL +  +S     PV+ N+  QGL+ + +F+F+L+                DP +Y G+  +VPV++  YWQ  +  + ++GE  G C +GC  I
Sbjct:   50 YKLLSGQQDPDVSFEPLRNYLDLAYIGIISIGTPPQEFKVVLDTGSADLWVPSIYC-SSPACGKHNTFNPLLSSTFLVSGRPINIVYGSGRMSGFLAYDTVQIAGLVDVAQAFGLSLQEPGKFMEYAVFDGILGLSYPSLSFEGITPVFDNLWAQGLISQNLFAFYLS--SKEERGSMLMLGGVDPSYYSGDLHWVPVSRPLYWQLAVDRISMNGEAIG-CDSGCQGI 273          
BLAST of FC878173 vs. ExPASy Swiss-Prot
Match: PAG1_PIG (Pregnancy-associated glycoprotein 1 OS=Sus scrofa GN=PAG1 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.579e-27
Identity = 73/231 (31.60%), Postives = 113/231 (48.92%), Query Frame = 3
Query:  243 VRRYNLHGSLGDSDTDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDXXXXXXXXXXXXXXDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAI 935
            ++++ L GSL       + L N++D  Y G ++IGTP Q F+VIFDT SS+LWVPS +C+                     N T     + +G +SG    D V++G    +NQ F  +  E       A FDG+LGLG+  ++I    PV+ N+  QG + EPVF+ +L+ +              D + + G   +VP++ + YWQ  +  +   G   G C+ GC AI
Sbjct:   49 IQKFGLKGSLCSPKISCLRLWNYLDMVYVGNITIGTPPQLFSVIFDTASSDLWVPSNQCHSRACVTHRSFNPTLSSTFQSSNRTVKLAPH-SGLVSGLLGYDTVQIGRFKSENQAFGLSQSEPVKELENAFFDGVLGLGYPSLAIQGTTPVFDNLRKQGQIPEPVFALYLSTN--TKKGSVLMIGGVDNNFFTGNLKWVPLSARNYWQITLDRITWRGVVVG-CTRGCQAI 275          
BLAST of FC878173 vs. ExPASy Swiss-Prot
Match: PAG1_SHEEP (Pregnancy-associated glycoprotein 1 OS=Ovis aries GN=PAG1 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 2.062e-27
Identity = 77/221 (34.84%), Postives = 110/221 (49.77%), Query Frame = 3
Query:  279 SDTDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAA--IQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDXXXXXXXXXXXXXXDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAI 935
            S+  I  L N MD  Y G ++IGTP Q F V+FDTGSS+L VPS  C                        T+    I +G+G + GF + D V++GDLV  +Q F     E   ++L   FDGILGL + +IS   AIP++  + ++G   EPVF+F+LN+D              D  +YKGE  +VP+   G W   +  + +  +    CS GC A+
Sbjct:   56 SNLTIHPLRNIMDMLYVGNITIGTPPQEFQVVFDTGSSDLLVPSINCLSPTKRPCSKQDKFKHHQSSTFRFTNDTFRIYFGSGTMRGFVAHDTVRIGDLVSTDQPFGLIFLE---SWLDIPFDGILGLNYPKISFSGAIPIFDKLKNEGAFSEPVFAFYLNKD--KQEGSVVMFGGVDHRYYKGELNWVPLIHPGEWSIPLDRISMRRKVIA-CSGGCEAL 270          
BLAST of FC878173 vs. ExPASy Swiss-Prot
Match: PAG1_BOVIN (Pregnancy-associated glycoprotein 1 OS=Bos taurus GN=PAG1 PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.888e-26
Identity = 72/212 (33.96%), Postives = 105/212 (49.53%), Query Frame = 3
Query:  300 LNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDXXXXXXXXXXXXXXDPDHYKGEHTYVPVTKKGYWQFEMGDVLIDGETTGYCSTGCNAI 935
            L N  D  Y G ++IGTP Q F V+FDT SS+LWVPS  C                      N T   I YG+G + G    D V++G+LV  +Q F  + +E    F    +DG+LGL +  IS   AIP++  + +Q  + EPVF+F+L++D              D  +Y+GE  +VP+ + G W   M  + I+ +    CS GC A+
Sbjct:   63 LRNIKDLVYMGNITIGTPPQEFQVVFDTASSDLWVPSDFCTSPACSTHVRFRHLQSSTFRLTNKT-FRITYGSGRMKGVVVHDTVRIGNLVSTDQPFGLSIEEYG--FEGRIYDGVLGLNYPNISFSGAIPIFDKLKNQRAISEPVFAFYLSKD--EREGSVVMFGGVDHRYYEGELNWVPLIQAGDWSVHMDRISIERKIIA-CSDGCKAL 268          
BLAST of FC878173 vs. ExPASy Swiss-Prot
Match: PLM1_PLAFA (Plasmepsin-1 OS=Plasmodium falciparum PE=1 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 3.292e-25
Identity = 83/308 (26.95%), Postives = 148/308 (48.05%), Query Frame = 3
Query:   93 LFLFLILSPAAFALPNDGLVRIGLRKKKLDQINR-----LVGQTVSKEEETMRTPVRRYNLHGSLGDS----------------DTDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASI--TFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDXXXXXXXXXXXXXXDPDHYKGEHTYVPVTKKGYWQFEM----GDVLIDGETTGYCSTGCNAI 935
            +F FL+++ A F    D +  +  + KK+++I       ++G ++    + +   V+++ L   + +S                  D V LN+  +  Y+GE  IG   Q F  IFDTGS+NLWVPSA+C  ++                 ++GT   + Y +G +SGFFS+D V + +L    + FIE T        +   +FDGI+GLG++++SIG   PV   + +Q  +++ VF+F+L  D              +   Y+G+ TY  +    YWQ ++    G++ ++ + T    +G ++I
Sbjct:   43 VFFFLLITGALFYYLIDNV--LFPKNKKINEIMNTSKHVIIGFSIENSHDRIMKTVKQHRLKNYIKESLKFFKTGLTQKPHLGNAGDSVTLNDVANVMYYGEAQIGDNKQKFAFIFDTGSANLWVPSAQCN-TIGCKTKNLYDSNKSKTYEKDGTKVEMNYVSGTVSGFFSKDIVTIANLSFPYK-FIEVTDTNGFEPAYTLGQFDGIVGLGWKDLSIGSVDPVVVELKNQNKIEQAVFTFYLPFD--DKHKGYLTIGGIEDRFYEGQLTYEKLNHDLYWQVDLDLHFGNLTVE-KATAIVDSGTSSI 343          
BLAST of FC878173 vs. ExPASy Swiss-Prot
Match: PLM1_PLAF7 (Plasmepsin-1 OS=Plasmodium falciparum (isolate 3D7) GN=PF14_0076 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 3.292e-25
Identity = 83/308 (26.95%), Postives = 148/308 (48.05%), Query Frame = 3
Query:   93 LFLFLILSPAAFALPNDGLVRIGLRKKKLDQINR-----LVGQTVSKEEETMRTPVRRYNLHGSLGDS----------------DTDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASI--TFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDXXXXXXXXXXXXXXDPDHYKGEHTYVPVTKKGYWQFEM----GDVLIDGETTGYCSTGCNAI 935
            +F FL+++ A F    D +  +  + KK+++I       ++G ++    + +   V+++ L   + +S                  D V LN+  +  Y+GE  IG   Q F  IFDTGS+NLWVPSA+C  ++                 ++GT   + Y +G +SGFFS+D V + +L    + FIE T        +   +FDGI+GLG++++SIG   PV   + +Q  +++ VF+F+L  D              +   Y+G+ TY  +    YWQ ++    G++ ++ + T    +G ++I
Sbjct:   43 VFFFLLITGALFYYLIDNV--LFPKNKKINEIMNTSKHVIIGFSIENSHDRIMKTVKQHRLKNYIKESLKFFKTGLTQKPHLGNAGDSVTLNDVANVMYYGEAQIGDNKQKFAFIFDTGSANLWVPSAQCN-TIGCKTKNLYDSNKSKTYEKDGTKVEMNYVSGTVSGFFSKDIVTIANLSFPYK-FIEVTDTNGFEPAYTLGQFDGIVGLGWKDLSIGSVDPVVVELKNQNKIEQAVFTFYLPFD--DKHKGYLTIGGIEDRFYEGQLTYEKLNHDLYWQVDLDLHFGNLTVE-KATAIVDSGTSSI 343          
BLAST of FC878173 vs. ExPASy Swiss-Prot
Match: PLM2_PLAFA (Plasmepsin-2 OS=Plasmodium falciparum PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 5.255e-23
Identity = 66/211 (31.28%), Postives = 107/211 (50.71%), Query Frame = 3
Query:  279 SDTDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEA--TKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLDQGLVKEPVFSFWLNRDXXXXXXXXXXXXXXDPDHYKGEHTYVPVTKKGYWQF----EMGDVLID 893
            S  D + L +F +  ++G+  +G   Q FT I DTGS+NLWVPS KC  +                  ++GT   + Y +G +SGFFS+D V VG+L +  + FIE   T     T+ A+ FDGILGLG++++SIG   P+   + +Q  ++  +F+F+L                 +   Y+G  TY  +    YWQ      +G+++++
Sbjct:  125 SSNDNIELVDFQNIMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKC-TTAGCLTKHLYDSSKSRTYEKDGTKVEMNYVSGTVSGFFSKDLVTVGNLSLPYK-FIEVIDTNGFEPTYTASTFDGILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYL--PVHDKHTGFLTIGGIEERFYEGPLTYEKLNHDLYWQITLDAHVGNIMLE 331          
The following BLAST results are available for this feature:
BLAST of FC878173 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
PEPA_CHICK8.943e-3139.15Pepsin A OS=Gallus gallus GN=PGA PE=1 SV=1[more]
PEPA_RHIFE1.168e-3035.85Pepsin A OS=Rhinolophus ferrumequinum GN=PGA PE=2 ... [more]
PEP2B_GADMO5.797e-3036.32Pepsin-2B OS=Gadus morhua PE=1 SV=1[more]
PEPAF_RABIT2.877e-2934.21Pepsin F OS=Oryctolagus cuniculus PE=2 SV=1[more]
PAG1_PIG1.579e-2731.60Pregnancy-associated glycoprotein 1 OS=Sus scrofa ... [more]
PAG1_SHEEP2.062e-2734.84Pregnancy-associated glycoprotein 1 OS=Ovis aries ... [more]
PAG1_BOVIN3.888e-2633.96Pregnancy-associated glycoprotein 1 OS=Bos taurus ... [more]
PLM1_PLAFA3.292e-2526.95Plasmepsin-1 OS=Plasmodium falciparum PE=1 SV=2[more]
PLM1_PLAF73.292e-2526.95Plasmepsin-1 OS=Plasmodium falciparum (isolate 3D7... [more]
PLM2_PLAFA5.255e-2331.28Plasmepsin-2 OS=Plasmodium falciparum PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionIC0AAA83DG07RM1 IVIA1 Citrus clementina cDNA clone IC0AAA83DG07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878173 ID=FC878173; Name=FC878173; organism=Citrus clementina; type=EST; length=936bp
CTCGTCAGTCCACTTCTTTACTCTGTCTGTGCTCTTTTGAAAGATACTCA
GTTGTCGACATGGGAACCAAATTCACAGCCATTCGGGTTGCACTTTTTCT
TTTTCTCATTTTGTCCCCTGCGGCCTTTGCTTTGCCAAATGATGGATTGG
TAAGAATTGGGCTGAGAAAGAAGAAATTGGATCAGATCAATCGCCTTGTT
GGACAGACTGTATCTAAGGAAGAGGAAACGATGAGAACACCTGTCAGAAG
ATATAATCTCCATGGTAGTCTTGGAGATTCTGATACTGATATTGTTGCAT
TAAATAACTTTATGGATGCTCAGTATTTTGGGGAGGTTAGTATTGGCACA
CCTTCCCAGACCTTCACTGTGATATTTGACACAGGAAGTTCTAATCTTTG
GGTGCCTTCTGCGAAGTGTTATTTCTCAGTTTCTTGCTATTTCCACTCCA
AGTATAAGTCCAGCCATTCAAGTACCTACAAAAGGAATGGGACATCTGCC
GCAATCCAATATGGGACTGGAGCAATTTCTGGTTTCTTTAGCCAGGACAA
TGTGAAAGTTGGTGATCTTGTTGTTAAGAATCAGGATTTCATTGAGGCAA
CCAAAGAAGCTAGCATCACATTCTTGGCAGCCAAGTTTGATGGTATACTT
GGGCTTGGATTTCAAGAGATCTCAATTGGAAAAGCCATTCCAGTCTGGTA
TAATATGCTTGATCAAGGTCTCGTTAAAGAACCAGTTTTTTCATTTTGGT
TAAACCGTGATATTGAAGGTGAAGAAGGTGGGGAAATTGTGTTTGGTGGG
GTTGATCCTGATCATTACAAGGGTGAACACACATATGTGCCAGTGACTAA
GAAAGGCTATTGGCAGTTTGAAATGGGTGATGTCCTGATTGATGGTGAAA
CAACTGGATATTGTTCCACTGGGTGTAACGCAATTG
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