FC878174

Overview
NameFC878174
Unique NameFC878174
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length899
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878174 vs. ExPASy Swiss-Prot
Match: PEL1_ARATH (Probable pectate lyase 1 OS=Arabidopsis thaliana GN=At1g04680 PE=2 SV=2)

HSP 1 Score: 213.001 bits (541), Expect = 1.874e-54
Identity = 103/196 (52.55%), Postives = 127/196 (64.80%), Query Frame = 1
Query:  292 CEATNPIDKCWRCKENWAEDRQALAGCALXXXXXXXXXXXXXIYEVTDSSDNNMENPKVGTLRHAVIQKEPLWIIFAKDMNIKLQQELVVQGNKTIDGRGANVHIANGAGIRLQFVQNVXXXXXXXXXXSPASGGMIRDSVDHVGNRGPSDGDAVSVFGSSNIWLDHLTLSKAQDGLIDAIQGSTAITISNCHLSN 879
            C   NPID CWRC  NW ++R+ LA C +              Y VTD  D+N  NP+ GTLRHAVIQ  PLWI+F +DM I+L+QEL+V   KTIDGRGANVHIANG  I +QFV NV           P    M+R S  H G R  +DGDA+S+FGSS++W+DH +LS   DGL+DA+ GSTAITISN HL++
Sbjct:   77 CGTGNPIDDCWRCDPNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDNPVNPRPGTLRHAVIQDRPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIANGGCITIQFVTNVIVHGLHIHDCKPTGNAMVRSSETHFGWRTMADGDAISIFGSSHVWIDHNSLSHCADGLVDAVMGSTAITISNNHLTH 272          
BLAST of FC878174 vs. ExPASy Swiss-Prot
Match: PEL20_ARATH (Probable pectate lyase 20 OS=Arabidopsis thaliana GN=At5g48900 PE=2 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 4.617e-53
Identity = 109/239 (45.61%), Postives = 146/239 (61.09%), Query Frame = 1
Query:  166 QTTEQYYDPDPVAVASNLNMKVQDLSKQTAARR-GLLNAESGQCEATNPIDKCWRCKENWAEDRQALAGCALXXXXXXXXXXXXXIYEVTDSSDNNMENPKVGTLRHAVIQKEPLWIIFAKDMNIKLQQELVVQGNKTIDGRGANVHIANGAGIRLQFVQNVXXXXXXXXXXSPASGGMIRDSVDHVGNRGPSDGDAVSVFGSSNIWLDHLTLSKAQDGLIDAIQGSTAITISNCHLSN 879
            +T  ++   +P  VA+ ++M +++    TA RR G  +  +G     NPID CWRC   W   R+ LA CA+              Y V+D +D+N  NPK GTLRHAVIQ+EPLWI+F +DM I L++EL++   KTIDGRG NVHIANGA I +QFV N+           P    M+R S  H G R  +DGD +S+FGSS+IW+DH +LS   DGLIDA+  STAITISN + ++
Sbjct:   30 ETWHEHAVENPEEVAAMVDMSIRN---STARRRLGYFSCSTG-----NPIDDCWRCDRRWQSRRKHLANCAIGFGRNAIGGRDGRYYVVSDPNDDNPVNPKPGTLRHAVIQEEPLWIVFKRDMVITLKEELIMNSFKTIDGRGVNVHIANGACITIQFVTNIIIHGIHIHDCRPTGNAMVRSSPSHYGWRTMADGDGISIFGSSHIWIDHNSLSNCADGLIDAVMASTAITISNNYFTH 260          
BLAST of FC878174 vs. ExPASy Swiss-Prot
Match: PEL18_ARATH (Probable pectate lyase 18 OS=Arabidopsis thaliana GN=At4g24780 PE=2 SV=2)

HSP 1 Score: 206.838 bits (525), Expect = 1.343e-52
Identity = 105/230 (45.65%), Postives = 140/230 (60.87%), Query Frame = 1
Query:  190 PDPVAVASNLNMKVQDLSKQTAARRGLLNAESGQCEATNPIDKCWRCKENWAEDRQALAGCALXXXXXXXXXXXXXIYEVTDSSDNNMENPKVGTLRHAVIQKEPLWIIFAKDMNIKLQQELVVQGNKTIDGRGANVHIANGAGIRLQFVQNVXXXXXXXXXXSPASGGMIRDSVDHVGNRGPSDGDAVSVFGSSNIWLDHLTLSKAQDGLIDAIQGSTAITISNCHLSN 879
            PDP +V   ++   + ++   A RR L       C   NPID CWRC  +W + RQ LA CA+             IY VTDS ++N  +PK GTLRHAV+Q EPLWIIF +DM I+L++EL++   KTIDGRGA+VHI+ G  I +Q+V N+                M+R S  H G R  SDGD VS+FG S++W+DH + S  +DGLIDAI GSTAIT+SN H+++
Sbjct:   28 PDPESVVEEVH---KSINASVAGRRKLGYLS---CTTGNPIDDCWRCDPHWEQHRQRLADCAIGFGKNAIGGRDGRIYVVTDSGNDNPVSPKPGTLRHAVVQDEPLWIIFQRDMTIQLKEELIMNSFKTIDGRGASVHISGGPCITIQYVTNIIIHGIHIHDCKQGGNAMVRSSPRHFGWRTISDGDGVSIFGGSHVWVDHCSFSNCEDGLIDAIMGSTAITLSNNHMTH 251          
BLAST of FC878174 vs. ExPASy Swiss-Prot
Match: PEL12_ARATH (Probable pectate lyase 12 OS=Arabidopsis thaliana GN=At3g53190 PE=2 SV=2)

HSP 1 Score: 205.682 bits (522), Expect = 2.992e-52
Identity = 106/230 (46.09%), Postives = 133/230 (57.83%), Query Frame = 1
Query:  190 PDPVAVASNLNMKVQDLSKQTAARRGLLNAESGQCEATNPIDKCWRCKENWAEDRQALAGCALXXXXXXXXXXXXXIYEVTDSSDNNMENPKVGTLRHAVIQKEPLWIIFAKDMNIKLQQELVVQGNKTIDGRGANVHIANGAGIRLQFVQNVXXXXXXXXXXSPASGGMIRDSVDHVGNRGPSDGDAVSVFGSSNIWLDHLTLSKAQDGLIDAIQGSTAITISNCHLSN 879
            PDP  VA  +  KV     +  A      A S  C   NPID CW+C  NW  +RQ LA C +              Y VTDSSD++  NPK GTLR+ VIQ+EPLWI+F  +M IKL+QEL+    KT+DGRGANVHI  G  I LQ+V N+            +    +R S  H G R  SDGD +S+FGS +IW+DH +LS+ +DGLIDA+ GST ITISN   S+
Sbjct:   36 PDPELVAYQVQWKVNASITRRQALDTTDQAGSTPCITGNPIDDCWKCDPNWPNNRQGLADCGIGFGQYALGGKGGQFYFVTDSSDDDAVNPKPGTLRYGVIQEEPLWIVFPSNMMIKLKQELIFNSYKTLDGRGANVHIVGGGCITLQYVSNIIIHNIHIHHCYQSGNTNVRSSPTHYGFRTKSDGDGISIFGSKDIWIDHCSLSRCKDGLIDAVMGSTGITISNNFFSH 265          
BLAST of FC878174 vs. ExPASy Swiss-Prot
Match: PEL9_ARATH (Probable pectate lyase 9 OS=Arabidopsis thaliana GN=At3g24230 PE=2 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 1.137e-51
Identity = 111/234 (47.44%), Postives = 145/234 (61.97%), Query Frame = 1
Query:  187 DPDPVA--VASNLNMKVQDLSKQTAARR-GLLNAESGQCEATNPIDKCWRCKENWAEDRQALAGCALXXXXXXXXXXXXXIYEVTDSSDNNMENPKVGTLRHAVIQKEPLWIIFAKDMNIKLQQELVVQGNKTIDGRGANVHIANGAGIRLQFVQNVXXXXXXXXXXSPASGGMIRDSVDHVGNRGPSDGDAVSVFGSSNIWLDHLTLSKAQDGLIDAIQGSTAITISNCHLSN 879
            DPD VA  V++ ++M  Q++   TA R+ G  +  +G     N ID CWRC  NW ++R+ LA C +              Y VTD SD+++ NPK GTLRHAVIQ EPLWIIF +DM IKL+QEL++   KTID RGANVHIANGA I +Q + NV                 +R S    G RG +DGDA+++FGSS+IW+DH +LS   DGL+D + GSTAITISN H ++
Sbjct:   70 DPDKVAHEVSNLIHMSEQNI---TARRKLGFFSCGNG-----NLIDDCWRCDRNWNKNRKHLADCGMGFGSKAFGGRNGSYYVVTDHSDDDVVNPKPGTLRHAVIQVEPLWIIFKRDMVIKLKQELIMNSFKTIDARGANVHIANGACITIQNITNVIVHGLHIHDCKRTGNVTVRSSPSQAGFRGTADGDAINIFGSSHIWIDHNSLSNCTDGLVDVVNGSTAITISNNHFTH 295          
BLAST of FC878174 vs. ExPASy Swiss-Prot
Match: PEL8_ARATH (Probable pectate lyase 8 OS=Arabidopsis thaliana GN=At3g07010 PE=2 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.485e-51
Identity = 109/248 (43.95%), Postives = 140/248 (56.45%), Query Frame = 1
Query:  121 AEADEVWRRRAEEAMQTTEQYYDPDPVAVASNLNMKVQDLSKQTAARRGLLNAESGQCEATNPIDKCWRCKENWAEDRQALAGCALXXXXXXXXXXXXXIYEVTDSSDNNMENPKVGTLRHAVIQKEPLWIIFAKDMNIKLQQELVVQGNKTIDGRGANVHIANGAGIRLQFVQNVXXXXXXXXXXSPASGGMIRDSVDHVGNRGPSDGDAVSVFGSSNIWLDHLTLSKAQDGLIDAIQGSTAITISN 864
            + ++E W   A E         +PD VA        + D+S + +  R  L   S  C   NPID CWRC   W   R+ LA C++              Y VTD  D++  NP  GTLRHAVIQ EPLWIIF +DM I L+QEL++   KTIDGRG NVHIANGA + +Q+V N+           P    M+R S  H G R  +DGDA+S+FGSS+IW+DH +LS   DGL+DA+  STAIT+SN
Sbjct:   25 SRSNETWHEHAVE---------NPDEVAA-------MVDMSIRNSTERRRLGYFS--CATGNPIDDCWRCDRKWQLRRKRLADCSIGFGRNAIGGRDGRFYVVTDPGDDDPVNPIPGTLRHAVIQDEPLWIIFKRDMVITLKQELIMNSFKTIDGRGVNVHIANGACLTIQYVTNIIVHGIHVHDCKPTGNAMVRSSPSHYGFRSMADGDAISIFGSSHIWIDHNSLSNCADGLVDAVMSSTAITVSN 254          
BLAST of FC878174 vs. ExPASy Swiss-Prot
Match: PEL11_ARATH (Putative pectate lyase 11 OS=Arabidopsis thaliana GN=At3g27400 PE=2 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.940e-51
Identity = 99/209 (47.37%), Postives = 133/209 (63.64%), Query Frame = 1
Query:  253 AARRGLLNAESGQCEATNPIDKCWRCKENWAEDRQALAGCALXXXXXXXXXXXXXIYEVTDSSDNNMENPKVGTLRHAVIQKEPLWIIFAKDMNIKLQQELVVQGNKTIDGRGANVHIANGAGIRLQFVQNVXXXXXXXXXXSPASGGMIRDSVDHVGNRGPSDGDAVSVFGSSNIWLDHLTLSKAQDGLIDAIQGSTAITISNCHLSN 879
            A+RR L       C   NPID CWRC  NW  +RQ LA CA+             IY VTD ++++  NP+ GTLR+AV Q+EPLWIIF +DM I+L++EL++   KTIDGRG++VHI +G  +++ +  N+           P SGGMI+D   H G    SDGDAV++FG  ++W+DH +LS   DGLIDAI GSTAITISN H+++
Sbjct:   47 ASRRSLAYLS---CRTGNPIDDCWRCDPNWETNRQRLADCAIGFGKNAIGGRKGRIYVVTDPANDDPVNPRPGTLRYAVTQEEPLWIIFKRDMVIRLKKELIITSFKTIDGRGSSVHITDGPCLKIHYATNIIIHGINIHDCKPGSGGMIKDGPHHTGWWMQSDGDAVAIFGGKHVWIDHCSLSNCDDGLIDAIHGSTAITISNNHMTH 252          
BLAST of FC878174 vs. ExPASy Swiss-Prot
Match: PEL10_ARATH (Probable pectate lyase 10 OS=Arabidopsis thaliana GN=At3g24670 PE=2 SV=2)

HSP 1 Score: 201.445 bits (511), Expect = 5.643e-51
Identity = 106/229 (46.29%), Postives = 141/229 (61.57%), Query Frame = 1
Query:  193 DPVAVASNLNMKVQDLSKQTAARRGLLNAESGQCEATNPIDKCWRCKENWAEDRQALAGCALXXXXXXXXXXXXXIYEVTDSSDNNMENPKVGTLRHAVIQKEPLWIIFAKDMNIKLQQELVVQGNKTIDGRGANVHIANGAGIRLQFVQNVXXXXXXXXXXSPASGGMIRDSVDHVGNRGPSDGDAVSVFGSSNIWLDHLTLSKAQDGLIDAIQGSTAITISNCHLSN 879
            +P  VA+ ++MK+++ +++   R G  +  +G     NPID CWRC  NW   R+ LA CA+              Y VTD SD++  NP+ GTLRHAVIQ  PLWI+F +DM I L QEL++   KTIDGRG NV IA GA I +Q+V N+                M+R S  H G R  +DGDA+S+FGSS+IW+DH +LS   DGLIDAI GSTAITISN ++++
Sbjct:   62 NPEEVAAMVDMKIKNSTERR--RLGFFSCATG-----NPIDDCWRCDRNWHLRRKRLANCAIGFGRNAIGGRDGRYYVVTDPSDHDAVNPRPGTLRHAVIQDRPLWIVFKRDMVITLTQELIMNSFKTIDGRGVNVAIAGGACITIQYVTNIIIHGINVHDCRRTGNAMVRSSPSHYGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLIDAIMGSTAITISNNYMTH 283          
BLAST of FC878174 vs. ExPASy Swiss-Prot
Match: PEL14_ARATH (Putative pectate lyase 14 OS=Arabidopsis thaliana GN=At4g13210 PE=2 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 2.145e-50
Identity = 106/229 (46.29%), Postives = 138/229 (60.26%), Query Frame = 1
Query:  193 DPVAVASNLNMKVQDLSKQTAARRGLLNAESGQCEATNPIDKCWRCKENWAEDRQALAGCALXXXXXXXXXXXXXIYEVTDSSDNNMENPKVGTLRHAVIQKEPLWIIFAKDMNIKLQQELVVQGNKTIDGRGANVHIANGAGIRLQFVQNVXXXXXXXXXXSPASGGMIRDSVDHVGNRGPSDGDAVSVFGSSNIWLDHLTLSKAQDGLIDAIQGSTAITISNCHLSN 879
            DP  +A+ ++M +++    +  RR L    S  C   NPID CWRC + W   R+ LA CA+              Y VTD SD++   PK GTLR+AVIQ EPLWI+F +DM I L QEL++   KTIDGRG NVHIA GA + +Q+V N+                M+R S  H G R  +DGD +S+FGSS+IW+DH +LS   DGLIDAI GSTAITISN +L++
Sbjct:   39 DPEEIAAMVDMSIRN----STYRRKLGFFSS--CSTGNPIDDCWRCDKKWHRRRKRLADCAIGFGRNAVGGRDGRYYIVTDPSDHDPVTPKPGTLRYAVIQDEPLWIVFKRDMVITLSQELIMNSFKTIDGRGVNVHIAGGACLTVQYVTNIIIHGINIHDCKRTGNAMVRSSESHYGWRTMADGDGISIFGSSHIWIDHNSLSSCADGLIDAIMGSTAITISNNYLTH 261          
BLAST of FC878174 vs. ExPASy Swiss-Prot
Match: PEL22_ARATH (Probable pectate lyase 22 OS=Arabidopsis thaliana GN=At5g63180 PE=2 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 3.658e-50
Identity = 101/229 (44.10%), Postives = 142/229 (62.01%), Query Frame = 1
Query:  193 DPVAVASNLNMKVQDLSKQTAARRGLLNAESGQCEATNPIDKCWRCKENWAEDRQALAGCALXXXXXXXXXXXXXIYEVTDSSDNNMENPKVGTLRHAVIQKEPLWIIFAKDMNIKLQQELVVQGNKTIDGRGANVHIANGAGIRLQFVQNVXXXXXXXXXXSPASGGMIRDSVDHVGNRGPSDGDAVSVFGSSNIWLDHLTLSKAQDGLIDAIQGSTAITISNCHLSN 879
            DP  V   ++ K+ +    + +RR L       C + NPID CWRC ++W ++R+ LA C +             IY VTD  +++  NP+ GTLR+AVIQ EPLWIIF +DM I+L++EL++   KT+DGRGA+VHI+ G  I +Q+V N+                 +RDS +H G R  SDGD VS+FG S++W+DH +LS   DGLIDAI+GSTAITISN +L++
Sbjct:   52 DPELVVEEVHRKINE----SISRRKL---GFFSCGSGNPIDDCWRCDKDWEKNRKRLADCGIGFGKNAIGGRDGEIYVVTDPGNDDPVNPRPGTLRYAVIQDEPLWIIFKRDMTIQLKEELIMNSFKTLDGRGASVHISGGPCITIQYVTNIIIHGLHIHDCKQGGNTYVRDSPEHYGYRTVSDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIRGSTAITISNNYLTH 273          
The following BLAST results are available for this feature:
BLAST of FC878174 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
PEL1_ARATH1.874e-5452.55Probable pectate lyase 1 OS=Arabidopsis thaliana G... [more]
PEL20_ARATH4.617e-5345.61Probable pectate lyase 20 OS=Arabidopsis thaliana ... [more]
PEL18_ARATH1.343e-5245.65Probable pectate lyase 18 OS=Arabidopsis thaliana ... [more]
PEL12_ARATH2.992e-5246.09Probable pectate lyase 12 OS=Arabidopsis thaliana ... [more]
PEL9_ARATH1.137e-5147.44Probable pectate lyase 9 OS=Arabidopsis thaliana G... [more]
PEL8_ARATH1.485e-5143.95Probable pectate lyase 8 OS=Arabidopsis thaliana G... [more]
PEL11_ARATH1.940e-5147.37Putative pectate lyase 11 OS=Arabidopsis thaliana ... [more]
PEL10_ARATH5.643e-5146.29Probable pectate lyase 10 OS=Arabidopsis thaliana ... [more]
PEL14_ARATH2.145e-5046.29Putative pectate lyase 14 OS=Arabidopsis thaliana ... [more]
PEL22_ARATH3.658e-5044.10Probable pectate lyase 22 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA38CG08RM2 IVIA1 Citrus clementina cDNA clone IC0AAA38CG08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878174 ID=FC878174; Name=FC878174; organism=Citrus clementina; type=EST; length=899bp
CTCGAACTTTTGTACATTAGAATAAAACATTTGAAAAAGAAAGTAAAAAT
GGAGCTAGCTAGGCTAAAATTAATCTTTCTTTTCTCTTTTATCATTTTGA
TCCCTTGCCTATCGGCTATCGCCGAGGCCGACGAGGTATGGAGGCGACGA
GCTGAAGAAGCCATGCAGACCACTGAGCAGTACTATGATCCTGACCCTGT
AGCTGTTGCCAGCAACTTGAACATGAAAGTTCAGGACTTGTCAAAGCAGA
CTGCTGCCAGAAGGGGCTTGTTGAATGCAGAATCAGGGCAATGTGAGGCA
ACAAACCCAATTGACAAATGTTGGCGTTGCAAAGAGAACTGGGCAGAAGA
TCGGCAGGCGCTAGCAGGTTGCGCGCTTGGTTTCGGCAGTAAAGCTACCG
GAGGAAAAGGTGGAAAAATTTATGAGGTGACTGATTCTTCTGACAATAAT
ATGGAGAACCCTAAGGTTGGTACTTTACGCCATGCAGTGATCCAAAAAGA
ACCTTTATGGATCATCTTTGCCAAGGACATGAACATCAAGTTGCAACAAG
AATTGGTTGTCCAGGGTAACAAGACCATTGATGGGCGTGGAGCCAATGTA
CACATTGCCAATGGAGCTGGAATTAGGCTACAGTTTGTGCAAAATGTCAT
CATTCATGGGATTCATATTCATAACATTTCTCCTGCCAGTGGTGGTATGA
TTAGGGATTCTGTGGATCATGTGGGAAATAGAGGTCCAAGTGATGGGGAC
GCTGTTTCAGTATTTGGTTCGTCAAATATTTGGCTTGATCATCTTACATT
ATCTAAAGCCCAAGATGGGCTCATTGATGCCATTCAAGGATCTACAGCCA
TCACCATTTCAAACTGCCACCTCTCAAACATGATCAGGGCATTTTGCTA
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