FC878174

Overview
NameFC878174
Unique NameFC878174
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length899
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878174 vs. ExPASy Swiss-Prot
Match: MPA11_AMBAR (Pollen allergen Amb a 1.1 OS=Ambrosia artemisiifolia PE=1 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 4.054e-41
Identity = 90/189 (47.62%), Postives = 114/189 (60.32%), Query Frame = 1
Query:  298 ATNPIDKCWRCKENWAEDRQALAGCALXXXXXXXXXXXXXIYEVTDSSDNNMENPKVGTLRHAVIQKEPLWIIFAKDMNIKLQQELVVQGNKTIDGRGANVHIANGAGIRLQFVQNVXXXXXXXXXXSPASGGMIRDSVDHVGNRGPSDGDAVSVFGSSNIWLDHLTLSKAQDGLIDAIQGSTAITISN 864
            A N ID CWR K +WAE+R+ALA CA              IY VT   D+++ NPK GTLR    Q  PLWIIF +DM I+L +E+VV  +KTIDGRGA V I N AG  L  V+NV              GG+I+ +      R  SDGDA+S+ GSS IW+DH +LSK+ DGL+DA  G+T +T+SN
Sbjct:   46 AYNIIDGCWRGKADWAENRKALADCAQGFGKGTVGGKDGDIYTVTSELDDDVANPKEGTLRFGAAQNRPLWIIFERDMVIRLDKEMVVNSDKTIDGRGAKVEIIN-AGFTLNGVKNVIIHNINMHDVKVNPGGLIKSNDGPAAPRAGSDGDAISISGSSQIWIDHCSLSKSVDGLVDAKLGTTRLTVSN 233          
BLAST of FC878174 vs. ExPASy Swiss-Prot
Match: MPA14_AMBAR (Pollen allergen Amb a 1.4 OS=Ambrosia artemisiifolia PE=1 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 9.031e-41
Identity = 90/192 (46.88%), Postives = 111/192 (57.81%), Query Frame = 1
Query:  292 CEATNPIDKCWRCKENWAEDRQALAGCALXXXXXXXXXXXXXIYEVTDSSDNNMENPKVGTLRHAVIQKEPLWIIFAKDMNIKLQQELVVQGNKTIDGRGANVHIANGAGIRLQFVQNVXXXXXXXXXXSPASGGMIRDSVDHVGNRGPSDGDAVSVFGSSNIWLDHLTLSKAQDGLIDAIQGSTAITISNC 867
            C   N ID CWR K +WAE+R+ALA CA              IY VT   D+++ NPK GTLR    Q  PLWIIFA+DM I+L +EL +  +KTIDGRGA V I N AG  +  V+N+              GG+I+        R  SDGDA+ + G S IW+DH +LSKA DGLIDA  GST  T+SNC
Sbjct:   45 CGTYNIIDGCWRGKADWAENRKALADCAQGFAKGTIGGKDGDIYTVTSELDDDVANPKEGTLRFGAAQNRPLWIIFARDMVIRLDRELAINNDKTIDGRGAKVEIIN-AGFAIYNVKNIIIHNIIMHDIVVNPGGLIKSHDGPPVPRKGSDGDAIGISGGSQIWIDHCSLSKAVDGLIDAKHGSTHFTVSNC 235          
BLAST of FC878174 vs. ExPASy Swiss-Prot
Match: PEL4_ARATH (Probable pectate lyase 4 OS=Arabidopsis thaliana GN=At1g30350 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 8.747e-36
Identity = 84/187 (44.92%), Postives = 106/187 (56.68%), Query Frame = 1
Query:  304 NPIDKCWRCKENWAEDRQALAGCALXXXXXXXXXXXXXIYEVTDSSDNNMENPKVGTLRHAVIQKEPLWIIFAKDMNIKLQQELVVQGNKTIDGRGANVHIANGAGIRLQFVQNVXXXXXXXXXXSPASGGMIRDSVDHVGNRGPSDGDAVSVFGSSNIWLDHLTLSKAQDGLIDAIQGSTAITISN 864
            NPID CWR    WA +RQALA CA+             IY VT+ SDN    P  GTLR+AV Q +PLWI FA+DM I L+ +L++   KTIDGRGA V IANG  +R++ V++V               GM              DGD + VF S+++W+DH  LS+  DGLID I  STA+TISN
Sbjct:   36 NPIDACWRRNPKWATNRQALAHCAVGYGKAAIGGKNGPIYVVTNPSDNPTR-PSPGTLRYAVSQPKPLWITFARDMVIVLKSQLMINSYKTIDGRGAKVEIANGPCLRIRQVKHVIIHGISIHDCKADPNGM--------------DGDGIRVFQSTHVWIDHCFLSRCHDGLIDVIVSSTAVTISN 207          
BLAST of FC878174 vs. ExPASy Swiss-Prot
Match: MPAJ1_JUNVI (Major pollen allergen Jun v 1 OS=Juniperus virginiana PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.675e-34
Identity = 82/199 (41.21%), Postives = 115/199 (57.79%), Query Frame = 1
Query:  292 CEATNPIDKCWRCKENWAEDRQALAGCALXXXXXXXXXXXXXIYEVTDSSDNNMENPKVGTLRHAVIQKEPLWIIFAKDMNIKLQQELVVQGNKTIDGRGANVHIANGAG-IRLQFVQNVXXXXXXXXXXSPASGG--MIRDSVDHVGNRGPSDGDAVSVFGSSNIWLDHLTLSKAQDGLIDAIQGSTAITISNCHLSN 879
            C + NPID CWR   NW ++R  LA CA+              Y VT S+D+N  NP  GTLR+   +++ LWIIF+++MNIKL+  L V G+KTIDGRGA+VH+ NG   + ++ V +V          + +  G  ++ +S+  V      DGDA+++   +N W+DH +LS   DGLID   GST ITISN H  N
Sbjct:   19 CCSDNPIDSCWRGDSNWGQNRMKLADCAVGFGSSTMGGKGGDFYTVT-SADDNPVNPTPGTLRYGATREKTLWIIFSQNMNIKLKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHGLHIHGCNTSVLGDVLVSESIGVVPVHA-QDGDAITMRNVTNAWIDHNSLSDCSDGLIDVTLGSTGITISNNHFFN 215          
BLAST of FC878174 vs. ExPASy Swiss-Prot
Match: MPAC1_CHAOB (Major pollen allergen Cha o 1 OS=Chamaecyparis obtusa PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 4.800e-34
Identity = 79/198 (39.90%), Postives = 111/198 (56.06%), Query Frame = 1
Query:  292 CEATNPIDKCWRCKENWAEDRQALAGCALXXXXXXXXXXXXXIYEVTDSSDNNMENPKVGTLRHAVIQKEPLWIIFAKDMNIKLQQELVVQGNKTIDGRGANVHIANGAG-IRLQFVQNVXXXXXXXXXXSPA-SGGMIRDSVDHVGNRGPSDGDAVSVFGSSNIWLDHLTLSKAQDGLIDAIQGSTAITISNCHLSN 879
            C + NPID CWR   NW ++R  LA CA+              Y VT SSD++  NP  GTLR+   ++  LWIIF+K++NIKL   L + GNKTIDGRGA VHI NG   + ++ V +V          + + SG ++      V      DGDA+++   +++W+DH +LS + DGL+D    ST +TISN H  N
Sbjct:   19 CFSDNPIDSCWRGDANWDQNRMKLADCAVGFGSSAMGGKGGAFYTVT-SSDDDPVNPAPGTLRYGATRERSLWIIFSKNLNIKLNMPLYIAGNKTIDGRGAEVHIGNGGPCLFMRTVSHVILHGLNIHGCNTSVSGNVLISEASGVVPVHAQDGDAITMRNVTDVWIDHNSLSDSSDGLVDVTLASTGVTISNNHFFN 215          
BLAST of FC878174 vs. ExPASy Swiss-Prot
Match: MPAJ1_JUNAS (Major pollen allergen Jun a 1 OS=Juniperus ashei PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 6.269e-34
Identity = 82/199 (41.21%), Postives = 115/199 (57.79%), Query Frame = 1
Query:  292 CEATNPIDKCWRCKENWAEDRQALAGCALXXXXXXXXXXXXXIYEVTDSSDNNMENPKVGTLRHAVIQKEPLWIIFAKDMNIKLQQELVVQGNKTIDGRGANVHIANGAG-IRLQFVQNVXXXXXXXXXXSPASGG--MIRDSVDHVGNRGPSDGDAVSVFGSSNIWLDHLTLSKAQDGLIDAIQGSTAITISNCHLSN 879
            C + NPID CWR   NW ++R  LA CA+              Y VT S+D+N  NP  GTLR+   +++ LWIIF+++MNIKL+  L V G+KTIDGRGA+VH+ NG   + ++ V +V          + +  G  ++ +S+  V      DGDA+++   +N W+DH +LS   DGLID   GST ITISN H  N
Sbjct:   19 CYSDNPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVT-STDDNPVNPTPGTLRYGATREKALWIIFSQNMNIKLKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHSLHIHGCNTSVLGDVLVSESIG-VEPVHAQDGDAITMRNVTNAWIDHNSLSDCSDGLIDVTLGSTGITISNNHFFN 215          
BLAST of FC878174 vs. ExPASy Swiss-Prot
Match: SBP_CRYJA (Sugi basic protein OS=Cryptomeria japonica PE=1 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 1.069e-33
Identity = 78/195 (40.00%), Postives = 111/195 (56.92%), Query Frame = 1
Query:  286 GQCEATNPIDKCWRCKENWAEDRQALAGCALXXXXXXXXXXXXXIYEVTDSSDNNMENPKVGTLRHAVIQKEPLWIIFAKDMNIKLQQELVVQGNKTIDGRGANVHIANGAG-IRLQFVQNVXXXXXXXXXXSPA-SGGMIRDSVDHVGNRGPSDGDAVSVFGSSNIWLDHLTLSKAQDGLIDAIQGSTAITISN 864
            G C + NPID CWR   NWA++R  LA CA+             +Y VT+S D+ + NP  GTLR+   +  PLWIIF+ +MNIKL+  + + G KT DGRGA V+I NG   + ++ V NV          S +  G ++ +    V    P DGDA+++  ++NIW+DH + S + DGL+D    ST +TISN
Sbjct:   17 GSCFSDNPIDSCWRGDSNWAQNRMKLADCAVGFGSSTMGGKGGDLYTVTNSDDDPV-NPAPGTLRYGATRDRPLWIIFSGNMNIKLKMPMYIAGYKTFDGRGAQVYIGNGGPCVFIKRVSNVIIHGLHLYGCSTSVLGNVLINESFGVEPVHPQDGDALTLRTATNIWIDHNSFSNSSDGLVDVTLSSTGVTISN 210          
BLAST of FC878174 vs. ExPASy Swiss-Prot
Match: MPAC1_CUPAR (Major pollen allergen Cup a 1 OS=Cupressus arizonica PE=1 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 2.017e-32
Identity = 81/195 (41.54%), Postives = 109/195 (55.90%), Query Frame = 1
Query:  304 NPIDKCWRCKENWAEDRQALAGCALXXXXXXXXXXXXXIYEVTDSSDNNMENPKVGTLRHAVIQKEPLWIIFAKDMNIKLQQELVVQGNKTIDGRGANVHIANGAG-IRLQFVQNVXXXXXXXXXXSPASGG--MIRDSVDHVGNRGPSDGDAVSVFGSSNIWLDHLTLSKAQDGLIDAIQGSTAITISNCHLSN 879
            NPID CWR   NW ++R  LA C +             IY VT S DN + NP  GTLR+   +++ LWIIF+++MNIKLQ  L V G KTIDGRGA VH+ NG   + ++   +V          + +  G  ++ +S+  V      DGDA+++   +N W+DH +LS   DGLID   GST ITISN H  N
Sbjct:    2 NPIDSCWRGDSNWDQNRMKLADCVVGFGSSTMGGKGGEIYTVTSSEDNPV-NPTPGTLRYGATREKALWIIFSQNMNIKLQMPLYVAGYKTIDGRGAVVHLGNGGPCLFMRKASHVILHGLHIHGCNTSVLGDVLVSESIG-VEPVHAQDGDAITMRNVTNAWIDHNSLSDCSDGLIDVTLGSTGITISNNHFFN 194          
The following BLAST results are available for this feature:
BLAST of FC878174 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
MPA11_AMBAR4.054e-4147.62Pollen allergen Amb a 1.1 OS=Ambrosia artemisiifol... [more]
MPA14_AMBAR9.031e-4146.88Pollen allergen Amb a 1.4 OS=Ambrosia artemisiifol... [more]
PEL4_ARATH8.747e-3644.92Probable pectate lyase 4 OS=Arabidopsis thaliana G... [more]
MPAJ1_JUNVI3.675e-3441.21Major pollen allergen Jun v 1 OS=Juniperus virgini... [more]
MPAC1_CHAOB4.800e-3439.90Major pollen allergen Cha o 1 OS=Chamaecyparis obt... [more]
MPAJ1_JUNAS6.269e-3441.21Major pollen allergen Jun a 1 OS=Juniperus ashei P... [more]
SBP_CRYJA1.069e-3340.00Sugi basic protein OS=Cryptomeria japonica PE=1 SV... [more]
MPAC1_CUPAR2.017e-3241.54Major pollen allergen Cup a 1 OS=Cupressus arizoni... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA38CG08RM2 IVIA1 Citrus clementina cDNA clone IC0AAA38CG08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878174 ID=FC878174; Name=FC878174; organism=Citrus clementina; type=EST; length=899bp
CTCGAACTTTTGTACATTAGAATAAAACATTTGAAAAAGAAAGTAAAAAT
GGAGCTAGCTAGGCTAAAATTAATCTTTCTTTTCTCTTTTATCATTTTGA
TCCCTTGCCTATCGGCTATCGCCGAGGCCGACGAGGTATGGAGGCGACGA
GCTGAAGAAGCCATGCAGACCACTGAGCAGTACTATGATCCTGACCCTGT
AGCTGTTGCCAGCAACTTGAACATGAAAGTTCAGGACTTGTCAAAGCAGA
CTGCTGCCAGAAGGGGCTTGTTGAATGCAGAATCAGGGCAATGTGAGGCA
ACAAACCCAATTGACAAATGTTGGCGTTGCAAAGAGAACTGGGCAGAAGA
TCGGCAGGCGCTAGCAGGTTGCGCGCTTGGTTTCGGCAGTAAAGCTACCG
GAGGAAAAGGTGGAAAAATTTATGAGGTGACTGATTCTTCTGACAATAAT
ATGGAGAACCCTAAGGTTGGTACTTTACGCCATGCAGTGATCCAAAAAGA
ACCTTTATGGATCATCTTTGCCAAGGACATGAACATCAAGTTGCAACAAG
AATTGGTTGTCCAGGGTAACAAGACCATTGATGGGCGTGGAGCCAATGTA
CACATTGCCAATGGAGCTGGAATTAGGCTACAGTTTGTGCAAAATGTCAT
CATTCATGGGATTCATATTCATAACATTTCTCCTGCCAGTGGTGGTATGA
TTAGGGATTCTGTGGATCATGTGGGAAATAGAGGTCCAAGTGATGGGGAC
GCTGTTTCAGTATTTGGTTCGTCAAATATTTGGCTTGATCATCTTACATT
ATCTAAAGCCCAAGATGGGCTCATTGATGCCATTCAAGGATCTACAGCCA
TCACCATTTCAAACTGCCACCTCTCAAACATGATCAGGGCATTTTGCTA
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