FC878179 | Citrus Genome Database

Overview


Name	FC878179
Unique Name	FC878179
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	944

Libraries


Library Name	Type
IVIA1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of FC878179 vs. ExPASy Swiss-Prot
Match: TBB1_PHYPO (Tubulin beta-1 chain OS=Physarum polycephalum GN=BETA PE=1 SV=4)

HSP 1 Score: 542.347 bits (1396), Expect = 1.446e-153
Identity = 261/314 (83.12%), Postives = 280/314 (89.17%), Query Frame = 1

Query:    1 RPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLNHLVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYT 942
            RPDNFVFGQ+GAGNNWAKGHYTEGAEL+DSVLDVVRKEAESCDCLQGFQ                   KIREEYPDR+M T+SVVPSPKVSDTVVEPYNATLSVHQLVEN DE  CIDNEALYDI FRTLKL+TPTYGDLNHLVS  MSG+T CLRFPGQLN+DLRKLAVN++PFPRLHFF+ GFAPLTSRGS  YR+LTVPELTQQMFDAKNMMAA DPRHGRYLT +A+FRGRMS KEVDEQMLN+QNKNSSYFVEWIPNN+K++VCDIPP+GLKMA TFIGNSTAIQELFKR+SEQFTAMFRRKAFLHWYT
Sbjct:   86 RPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQIAHSLGGGTGSGMGTLLISKIREEYPDRMMCTFSVVPSPKVSDTVVEPYNATLSVHQLVENADEVMCIDNEALYDISFRTLKLTTPTYGDLNHLVSAVMSGITCCLRFPGQLNSDLRKLAVNLIPFPRLHFFLVGFAPLTSRGSVGYRSLTVPELTQQMFDAKNMMAASDPRHGRYLTASAMFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNIKSSVCDIPPKGLKMAVTFIGNSTAIQELFKRVSEQFTAMFRRKAFLHWYT 399

[Close]

BLAST of FC878179 vs. ExPASy Swiss-Prot
Match: TBB_TOXGO (Tubulin beta chain OS=Toxoplasma gondii PE=3 SV=1)

HSP 1 Score: 540.421 bits (1391), Expect = 5.494e-153
Identity = 258/314 (82.17%), Postives = 279/314 (88.85%), Query Frame = 1

Query:    1 RPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLNHLVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYT 942
            RPDNFVFGQ+GAGNNWAKGHYTEGAEL+DSVLDVVRKEAE CDCLQGFQ                   K+REEYPDRIM T+SV PSPKVSDTVVEPYNATLSVHQLVEN DE   IDNEALYDICFRTLKL+TPTYGDLNHLVS  MSGVT CLRFPGQLN+DLRKLAVN+VPFPRLHFF+ GFAPLTSRGSQQYRAL+VPELTQQMFDAKNMM A DPRHGRYLT +A+FRGRMS KEVDEQMLN+QNKNSSYFVEWIPNN+K++VCDIPP+GLKM+ TF+GNSTAIQE+FKR+S+QFTAMFRRKAFLHWYT
Sbjct:   86 RPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAEGCDCLQGFQITHSLGGGTGSGMGTLLISKVREEYPDRIMETFSVFPSPKVSDTVVEPYNATLSVHQLVENADEVQVIDNEALYDICFRTLKLTTPTYGDLNHLVSAAMSGVTCCLRFPGQLNSDLRKLAVNLVPFPRLHFFLIGFAPLTSRGSQQYRALSVPELTQQMFDAKNMMCASDPRHGRYLTASAMFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNMKSSVCDIPPKGLKMSVTFVGNSTAIQEMFKRVSDQFTAMFRRKAFLHWYT 399

[Close]

BLAST of FC878179 vs. ExPASy Swiss-Prot
Match: TBB_UROFA (Tubulin beta chain OS=Uromyces fabae GN=TBB1 PE=3 SV=1)

HSP 1 Score: 540.036 bits (1390), Expect = 7.175e-153
Identity = 259/314 (82.48%), Postives = 282/314 (89.81%), Query Frame = 1

Query:    1 RPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLNHLVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYT 942
            RPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAE CDCLQGFQ                   KIREE+PDR+M T+SVVPSPKVSDTVVEPYNATLSVHQLVEN+DET+CIDNEALYDICFRTLKL+TPTYGDLNHLVS+ MSG+TTCLRFPGQLN+DLRKLAVNMVPFPRLHFFM GFAPLT+RGSQQYRA+TVPELT QMFDAKNMMAA DPRHGRYLTVAA FRG++SMKEV+E ML++QNKNS+YFVEWIPNNV+TA CDI PR  KM+ TFIGNSTAIQ+LFKR+++QFTAMFRRKAFLHWYT
Sbjct:   86 RPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAEGCDCLQGFQITHSLGGGTGAGMGTLLISKIREEFPDRMMATFSVVPSPKVSDTVVEPYNATLSVHQLVENSDETFCIDNEALYDICFRTLKLATPTYGDLNHLVSIVMSGITTCLRFPGQLNSDLRKLAVNMVPFPRLHFFMVGFAPLTARGSQQYRAITVPELTSQMFDAKNMMAASDPRHGRYLTVAAYFRGKVSMKEVEENMLSVQNKNSNYFVEWIPNNVQTAHCDIAPRAHKMSVTFIGNSTAIQDLFKRVADQFTAMFRRKAFLHWYT 399

[Close]

BLAST of FC878179 vs. ExPASy Swiss-Prot
Match: TBB5_ORYSJ (Tubulin beta-5 chain OS=Oryza sativa subsp. japonica GN=TUBB5 PE=1 SV=1)

HSP 1 Score: 540.036 bits (1390), Expect = 7.175e-153
Identity = 258/314 (82.17%), Postives = 281/314 (89.49%), Query Frame = 1

Query:    1 RPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLNHLVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYT 942
            RPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVVRKEAE+CDCLQGFQ                   KIREEYPDR+M T+SV PSPKVSDTVVEPYNATLSVHQLVEN DE   +DNEALYDICFRTLKL+TPT+GDLNHL+S TMSGVT CLRFPGQLN+DLRKLAVN++PFPRLHFFM GFAPLTSRGSQQYRALTVPELTQQM+DAKNMM A DPRHGRYLT +A+FRG+MS KEVDEQMLN+QNKNSSYFVEWIPNNVK++VCDIPP GLKMA+TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYT
Sbjct:   86 RPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSSVCDIPPNGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT 399

[Close]

BLAST of FC878179 vs. ExPASy Swiss-Prot
Match: TBB3_SOYBN (Tubulin beta chain (Fragment) OS=Glycine max GN=TUBB PE=2 SV=2)

HSP 1 Score: 540.036 bits (1390), Expect = 7.175e-153
Identity = 257/314 (81.85%), Postives = 282/314 (89.81%), Query Frame = 1

Query:    1 RPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLNHLVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYT 942
            RPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVVRKEAE+CDCLQGFQ                   KIREEYPDR+M T+SV PSPKVSDTVVEPYNATLSVHQLVEN DE   +DNEALYDICFRTLKL+TPT+GDLNHL+S TMSGVT CLRFPGQLN+DLRKLAVN++PFPRLHFFM GFAPLTSRGSQQYRALTVPELTQQM+DAKNMM A DPRHGRYLT +A+FRG+MS KEVDEQM+N+QNKNSSYFVEWIPNNVK++VCDIPP+GLKMA+TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYT
Sbjct:   86 RPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT 399

[Close]

BLAST of FC878179 vs. ExPASy Swiss-Prot
Match: TBB5_GOSHI (Tubulin beta-5 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 539.65 bits (1389), Expect = 9.371e-153
Identity = 257/314 (81.85%), Postives = 281/314 (89.49%), Query Frame = 1

Query:    1 RPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLNHLVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYT 942
            RPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVVRKEAE+CDCLQGFQ                   KIREEYPDR+M T+SV PSPKVSDTVVEPYNATLSVHQLVEN DE   +DNEALYDICFRTLKL+TPT+GDLNHL+S TMSGVT CLRFPGQLN+DLRKLAVN++PFPRLHFFM GFAPLTSRGSQQYRALTVPELTQQM+DAKNMM A DPRHGRYLT  A+FRG+MS KEVDEQM+N+QNKNSSYFVEWIPNNVK++VCDIPP+GLKMA+TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYT
Sbjct:   86 RPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTACAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT 399

[Close]

BLAST of FC878179 vs. ExPASy Swiss-Prot
Match: TBB_ENTDO (Tubulin beta chain OS=Enteroctopus dofleini PE=2 SV=1)

HSP 1 Score: 539.265 bits (1388), Expect = 1.224e-152
Identity = 259/314 (82.48%), Postives = 277/314 (88.22%), Query Frame = 1

Query:    1 RPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLNHLVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYT 942
            RPDN+VFGQSGAGNNWAKGHYTEGAELVD+VLDV+RKE E C+C+QGFQ                   K REEYPDRIM T+SV+PSPKVSDTVVEPYNATLS+HQLVENTDET+CIDNEALYDI  RTLKL  PTYGDLNHLVS TMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQ YR  +V +LTQQ+FDAKNMM ACDPRHGRYLTVAA+FRG+MSMKEVDEQM +IQNK S YFVEWIPNNVKTAVCDIPP GL+M+ATFIGNSTAIQE+FKRISEQFTAMFRRKAFLHWYT
Sbjct:   86 RPDNYVFGQSGAGNNWAKGHYTEGAELVDTVLDVIRKECEGCECIQGFQMTHSLGGGTGAGMGTLLISKYREEYPDRIMTTFSVMPSPKVSDTVVEPYNATLSIHQLVENTDETFCIDNEALYDISLRTLKLPNPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQDYRMHSVSDLTQQLFDAKNMMTACDPRHGRYLTVAAVFRGKMSMKEVDEQMFSIQNKMSPYFVEWIPNNVKTAVCDIPPTGLEMSATFIGNSTAIQEIFKRISEQFTAMFRRKAFLHWYT 399

[Close]

BLAST of FC878179 vs. ExPASy Swiss-Prot
Match: TBB3_ORYSJ (Tubulin beta-3 chain OS=Oryza sativa subsp. japonica GN=TUBB3 PE=2 SV=2)

HSP 1 Score: 538.88 bits (1387), Expect = 1.598e-152
Identity = 258/314 (82.17%), Postives = 281/314 (89.49%), Query Frame = 1

Query:    1 RPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLNHLVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYT 942
            RPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVVRKEAE+CDCLQGFQ                   KIREEYPDR+M T+SV PSPKVSDTVVEPYNATLSVHQLVEN DE   +DNEALYDICFRTLKL+TPT+GDLNHL+S TMSGVT CLRFPGQLN+DLRKLAVN++PFPRLHFFM GFAPLTSRGSQQYRALTVPELTQQM+DAKNMM A DPRHGRYLT +A+FRG+MS KEVDEQMLN+QNKNSSYFVEWIPNNVK++VCDIPP GLKMA+TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYT
Sbjct:   86 RPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSSVCDIPPIGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT 399

[Close]

BLAST of FC878179 vs. ExPASy Swiss-Prot
Match: TBB1_ELEIN (Tubulin beta-1 chain OS=Eleusine indica GN=TUBB1 PE=2 SV=1)

HSP 1 Score: 538.88 bits (1387), Expect = 1.598e-152
Identity = 257/314 (81.85%), Postives = 281/314 (89.49%), Query Frame = 1

Query:    1 RPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLNHLVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYT 942
            RPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVVRKEAE+CDCLQGFQ                   KIREEYPDR+M T+SV PSPKVSDTVVEPYNATLSVHQLVEN DE   +DNEALYDICFRTLKL+TPT+GDLNHL+S TMSGVT CLRFPGQLN+DLRKLAVN++PFPRLHFFM GFAPLTSRGSQQYRALTVPELTQQM+D+KNMM A DPRHGRYLT +A+FRG+MS KEVDEQMLN+QNKNSSYFVEWIPNNVK++VCDIPP GLKMA+TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYT
Sbjct:   86 RPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSSVCDIPPNGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT 399

[Close]

BLAST of FC878179 vs. ExPASy Swiss-Prot
Match: TBB2_OOMCK (Tubulin beta-2 chain (Fragment) OS=Oomycete-like sp. (strain MacKay2000) GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 538.11 bits (1385), Expect = 2.727e-152
Identity = 258/314 (82.17%), Postives = 277/314 (88.22%), Query Frame = 1

Query:    1 RPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLNHLVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYT 942
            RPDNFVFGQ+GAGNNWAKGHYTEGAEL+DSVLDVVRKEAESCDCLQGFQ                   KIREEYPDR+M T+SV PSPKVSDTVVEPYNATLSVHQLVEN DE   +DNEALYDICFRTLKL+TPTYGDLNHLV   MSGVT+CLRFPGQLN+DLRKLAVN++PFPRLHFFM GFAPLTSRGSQQYRALTVPELTQQ FDAKNMM A DPRHGRYLT + +FRGRMS KEVDEQMLN+QNKNSSYFVEWIPNN+K++VCDIPP+GLKM+A FIGNSTAIQE+FKRI EQFTAMFRRKAFLHWYT
Sbjct:   61 RPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQITHSLGGGTGSGMGTLLISKIREEYPDRVMLTFSVCPSPKVSDTVVEPYNATLSVHQLVENADEVMVLDNEALYDICFRTLKLTTPTYGDLNHLVCACMSGVTSCLRFPGQLNSDLRKLAVNLIPFPRLHFFMIGFAPLTSRGSQQYRALTVPELTQQQFDAKNMMCAADPRHGRYLTASCMFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNIKSSVCDIPPKGLKMSACFIGNSTAIQEMFKRIGEQFTAMFRRKAFLHWYT 374

The following BLAST results are available for this feature:

BLAST of FC878179 vs. ExPASy Swiss-Prot

BLAST of FC878179 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 426


Match Name	E-value	Identity	Description
TBB1_PHYPO	1.446e-153	83.12	Tubulin beta-1 chain OS=Physarum polycephalum GN=B...	[more]
TBB_TOXGO	5.494e-153	82.17	Tubulin beta chain OS=Toxoplasma gondii PE=3 SV=1	[more]
TBB_UROFA	7.175e-153	82.48	Tubulin beta chain OS=Uromyces fabae GN=TBB1 PE=3 ...	[more]
TBB5_ORYSJ	7.175e-153	82.17	Tubulin beta-5 chain OS=Oryza sativa subsp. japoni...	[more]
TBB3_SOYBN	7.175e-153	81.85	Tubulin beta chain (Fragment) OS=Glycine max GN=TU...	[more]
TBB5_GOSHI	9.371e-153	81.85	Tubulin beta-5 chain OS=Gossypium hirsutum PE=2 SV...	[more]
TBB_ENTDO	1.224e-152	82.48	Tubulin beta chain OS=Enteroctopus dofleini PE=2 S...	[more]
TBB3_ORYSJ	1.598e-152	82.17	Tubulin beta-3 chain OS=Oryza sativa subsp. japoni...	[more]
TBB1_ELEIN	1.598e-152	81.85	Tubulin beta-1 chain OS=Eleusine indica GN=TUBB1 P...	[more]
TBB2_OOMCK	2.727e-152	82.17	Tubulin beta-2 chain (Fragment) OS=Oomycete-like s...	[more]

Pages

Properties


Property Name	Value
Genbank description	IC0AAA83DG10RM1 IVIA1 Citrus clementina cDNA clone IC0AAA83DG10, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC878179 ID=FC878179; Name=FC878179; organism=Citrus clementina; type=EST; length=944bp
CGCCCCGACAACTTCGTGTTCGGACAGTCTGGCGCCGGCAACAACTGGGC
CAAGGGACACTACACAGAGGGCGCCGAGCTCGTCGACTCGGTTCTTGACG
TAGTCCGCAAAGAAGCAGAATCTTGCGATTGCCTCCAAGGTTTCCAACTG
ACACACTCGCTCGGTGGCGGTACCGGATCCGGTATGGGCACCCTACTCAT
CTCCAAAATCAGAGAAGAATACCCCGACAGAATAATGAACACATACTCAG
TAGTCCCCTCACCCAAAGTATCAGATACAGTAGTAGAACCTTACAACGCC
ACTCTCTCAGTCCATCAGCTAGTCGAAAACACAGATGAAACCTATTGTAT
TGACAACGAAGCTCTCTATGACATCTGCTTCCGCACACTCAAGCTATCGA
CACCCACATACGGAGACCTCAACCACCTGGTTTCCCTCACCATGTCCGGC
GTGACGACGTGTCTGCGGTTCCCTGGTCAGCTCAACGCCGATCTCCGCAA
ACTGGCCGTCAACATGGTTCCCTTCCCGCGTCTCCACTTCTTCATGCCTG
GATTCGCGCCCCTCACGTCCCGCGGCAGCCAGCAGTACCGCGCTTTGACC
GTGCCCGAGCTCACCCAACAGATGTTCGACGCCAAGAACATGATGGCCGC
CTGCGACCCGCGCCACGGCCGCTACCTCACCGTGGCCGCCATCTTCCGCG
GACGCATGTCCATGAAGGAGGTCGACGAGCAGATGCTCAACATCCAGAAC
AAGAACTCGTCCTACTTCGTGGAATGGATCCCGAACAACGTGAAGACCGC
CGTGTGCGACATCCCCCCGCGCGGGCTCAAGATGGCCGCCACCTTCATCG
GCAACTCCACCGCCATCCAGGAGCTGTTCAAGCGCATCTCCGAGCAGTTC
ACGGCTATGTTCAGGCGCAAGGCTTTCTTGCATTGGTACACTGG