FC878185

Overview
NameFC878185
Unique NameFC878185
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length921
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878185 vs. ExPASy Swiss-Prot
Match: TDH_ANADE (L-threonine 3-dehydrogenase OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=tdh PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 7.128e-33
Identity = 81/229 (35.37%), Postives = 128/229 (55.90%), Query Frame = 2
Query:  212 LPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKELGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAG 895
            +P +G +DV++R+    ICG+DVH       +   V  PMV+GHE  G +E+VG+EV+   PG+RV+ E  ++C  C +C+ GR +LC            GS A  VV PAD  +++PD++  +  A+ +P     H     ++  E +VL+ GAGPIG++    AR  GA  +V+ DV+DYRL +A+ +GA   V V+  +L+ +  E+      M  G DV  + +G
Sbjct:   21 VPEVGVHDVMIRVTKSAICGTDVHIYNWDEWSQKTVPVPMVVGHEYVGRVERVGAEVEAFRPGERVSGEGHVTCGFCRNCRAGRRHLCRHTVGVGVNR-PGSFAEYVVIPADNVYRIPDDIPDDIAAIFDPFGNATHTALSFDLVGE-DVLVTGAGPIGVMAAAIARHVGARHVVVTDVNDYRLDLARRMGASRAVNVAREDLRAVMSEL-----GMREGFDVGLEMSG 242          
BLAST of FC878185 vs. ExPASy Swiss-Prot
Match: TDH_ALTMD (L-threonine 3-dehydrogenase OS=Alteromonas macleodii (strain DSM 17117 / Deep ecotype) GN=tdh PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 7.128e-33
Identity = 81/234 (34.62%), Postives = 129/234 (55.13%), Query Frame = 2
Query:  197 IQPFELPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKELGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAG 895
            +Q    P +G  D+L++++   ICG+D+H       +   +  P+V+GHE  G +  +G EVK    GDRV+ E  I+C  C +C+ GR +LC   +        G+ A  +V PA   FK+PDN+S +  ++ +P    +H     ++  E +VLI GAGPIG++    A+  GA  +V+ D++ YRL +AK++GA   V VS  NLQD+ +E+      M  G DV  + +G
Sbjct:   15 LQDTPKPEVGHNDLLIKIRKTAICGTDMHIYNWDEWSQNTIPVPVVVGHEYVGEVVGMGQEVKGFEVGDRVSGEGHITCGHCRNCRAGRVHLCRNTEGVGVNR-PGAFAEYLVIPAFNAFKIPDNISDDLASIFDPFGNAVHTALSFDLVGE-DVLITGAGPIGIMAAAVAKHVGARHVVVTDINPYRLELAKKMGATRTVDVSKENLQDVMDEL-----GMSEGFDVGLEMSG 241          
BLAST of FC878185 vs. ExPASy Swiss-Prot
Match: TDH_SHEPC (L-threonine 3-dehydrogenase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=tdh PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 9.309e-33
Identity = 81/228 (35.53%), Postives = 126/228 (55.26%), Query Frame = 2
Query:  215 PSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKELGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAG 895
            P +G  D+L+++K   ICG+D+H       +   +  PMV+GHE  G +  +G EV+    GDRV+ E  I+C  C +C+ GR +LC            GS A  +V PA   FK+PD++S +  ++ +P    +H     ++  E +VLI GAGPIG++     R  GA  +VI DV++YRL +A+++GA   V VS  NL+D+ +E+      M  G DV  + +G
Sbjct:   21 PEMGHNDLLIKIKKTAICGTDMHIYNWDEWSQKTIPVPMVVGHEYVGEVVDIGQEVRGFKIGDRVSGEGHITCGHCRNCRAGRTHLCRNTSGVGVNR-EGSFAEYLVIPAFNAFKIPDDISDDLASIFDPFGNAVHTALSFDLVGE-DVLITGAGPIGIMAAAVCRHVGARHVVITDVNEYRLELARKMGATRAVNVSKENLKDVMKEL-----GMTEGFDVGLEMSG 241          
BLAST of FC878185 vs. ExPASy Swiss-Prot
Match: TDH_PSEA6 (L-threonine 3-dehydrogenase OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=tdh PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 9.309e-33
Identity = 78/230 (33.91%), Postives = 129/230 (56.09%), Query Frame = 2
Query:  209 ELPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKELGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAG 895
            E+P++G  D+L++++   ICG+D+H       +   +  PMV+GHE  G + ++G EV+    GDRV+ E  I+C  C +C+ GR +LC            G+ A  +  PA   FK+PDN+S +  A+ +P    +H     ++  E +VLI GAGPIG++    A+  GA  +VI DV++YRL +A+++GA   V V+  +L+D+  ++      M  G DV  + +G
Sbjct:   19 EMPTVGHNDILIKIRKTAICGTDMHIYNWDEWSQNTIPVPMVVGHEYVGEVVEIGEEVRGFAIGDRVSGEGHITCGHCRNCRAGRRHLCRNTSGVGVNRA-GAFAEYLSIPAFNAFKIPDNISDDLAAIFDPFGNAVHTALSFDLVGE-DVLITGAGPIGIMAAAVAQHVGARHVVITDVNEYRLDLARKMGASRAVNVAKESLKDVMNDL-----GMSEGFDVGLEMSG 241          
BLAST of FC878185 vs. ExPASy Swiss-Prot
Match: TDH_SHEPA (L-threonine 3-dehydrogenase OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=tdh PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.216e-32
Identity = 80/228 (35.09%), Postives = 127/228 (55.70%), Query Frame = 2
Query:  215 PSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKELGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAG 895
            P +G  D+L++++   ICG+DVH       +   +  PMV+GHE  G +  +G EV+    GDRV+ E  I+C  C +C+GGR +LC            G+ A  +V PA   FK+PD++S +  ++ +P    +H     ++  E +VLI GAGPIG++     R  GA  +VI DV++YRL +A+++GA   V V+  NL+D+ +E+      M  G DV  + +G
Sbjct:   21 PEVGHNDLLIKIRKTAICGTDVHIYNWDEWSQNTIPVPMVVGHEYVGEVVGMGQEVRGFTIGDRVSGEGHITCGHCRNCRGGRTHLCRNTSGVGVNR-EGAFAEYLVIPAFNAFKIPDDISDDLASIFDPFGNAVHTALSFDLVGE-DVLITGAGPIGIMAAAVCRHVGARHVVITDVNEYRLELAEKMGATRAVNVAKENLEDVMQEL-----GMTEGFDVGLEMSG 241          
BLAST of FC878185 vs. ExPASy Swiss-Prot
Match: TDH_PHOLL (L-threonine 3-dehydrogenase OS=Photorhabdus luminescens subsp. laumondii GN=tdh PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.216e-32
Identity = 83/228 (36.40%), Postives = 123/228 (53.95%), Query Frame = 2
Query:  215 PSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKELGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAG 895
            P LG  DV+++++   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C +C+GGR +LC            G  A  +V PA   FK+PDN+S E  A+ +P    +H     ++  E +VL+ GAGPIG++     +  GA  +VI DV++YRL +A+++G    V VS  NL D+  E+      M  G DV  + +G
Sbjct:   21 PELGHNDVMIKIRKTAICGTDVHIYNWDDWSQKTIPVPMVVGHEYVGEVVAIGQEVKGFKIGDRVSGEGHITCGYCRNCRGGRTHLCRNTIGVGVNRA-GCFAQYLVIPAFNAFKIPDNISDELAAIFDPFGNAVHTALSFDLVGE-DVLVSGAGPIGIMAAAVCKHVGARHVVITDVNEYRLELARKMGVTRAVNVSQENLTDVMAEL-----GMTEGFDVGLEMSG 241          
BLAST of FC878185 vs. ExPASy Swiss-Prot
Match: TDH_FRATW (L-threonine 3-dehydrogenase OS=Francisella tularensis subsp. tularensis (strain WY96-3418) GN=tdh PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.216e-32
Identity = 81/238 (34.03%), Postives = 134/238 (56.30%), Query Frame = 2
Query:  212 LPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKELGADNIVKVS--TNLQDIAEEVEKIQKAMG--TGIDVSFDCAGFNKNMS 913
            +P  G  DVL+++K   ICG+D+H     + +   +  PM+ GHE AG +   G  V ++  GDRV+ E  + C +C +C+ G+ +LC +        V G+ A  +V PA   FK+PD++S +  +  +P+   +H     N+  E +VLI GAGPIGL+ +  AR  GA RIVI D+++YRL +A++ GA   + V+   N  ++ +++ K+   +G   G DV  + +G N  +S
Sbjct:   21 IPEYGYNDVLIKIKKTAICGTDLHIYNWDKWSQNTIPVPMITGHEFAGEVVAKGDGVTSVDIGDRVSGEGHLVCGQCRNCRAGKRHLCRKTIGIGV-NVQGAFAEYLVMPAVNVFKIPDSISDDIASTFDPMGNAIHTALSFNLTGE-DVLITGAGPIGLMAVKIARFCGARRIVITDINEYRLQMARDFGATVALNVAPFKNQDELVKQMRKVMSDIGMTEGFDVGLEMSGINSAIS 256          
BLAST of FC878185 vs. ExPASy Swiss-Prot
Match: TDH_FRATT (L-threonine 3-dehydrogenase OS=Francisella tularensis subsp. tularensis GN=tdh PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.216e-32
Identity = 81/238 (34.03%), Postives = 134/238 (56.30%), Query Frame = 2
Query:  212 LPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKELGADNIVKVS--TNLQDIAEEVEKIQKAMG--TGIDVSFDCAGFNKNMS 913
            +P  G  DVL+++K   ICG+D+H     + +   +  PM+ GHE AG +   G  V ++  GDRV+ E  + C +C +C+ G+ +LC +        V G+ A  +V PA   FK+PD++S +  +  +P+   +H     N+  E +VLI GAGPIGL+ +  AR  GA RIVI D+++YRL +A++ GA   + V+   N  ++ +++ K+   +G   G DV  + +G N  +S
Sbjct:   21 IPEYGYNDVLIKIKKTAICGTDLHIYNWDKWSQNTIPVPMITGHEFAGEVVAKGDGVTSVDIGDRVSGEGHLVCGQCRNCRAGKRHLCRKTIGIGV-NVQGAFAEYLVMPAVNVFKIPDSISDDIASTFDPMGNAIHTALSFNLTGE-DVLITGAGPIGLMAVKIARFCGARRIVITDINEYRLQMARDFGATVALNVAPFKNQDELVKQMRKVMSDIGMTEGFDVGLEMSGINSAIS 256          
BLAST of FC878185 vs. ExPASy Swiss-Prot
Match: TDH_FRATO (L-threonine 3-dehydrogenase OS=Francisella tularensis subsp. holarctica (strain OSU18) GN=tdh PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.216e-32
Identity = 81/238 (34.03%), Postives = 134/238 (56.30%), Query Frame = 2
Query:  212 LPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKELGADNIVKVS--TNLQDIAEEVEKIQKAMG--TGIDVSFDCAGFNKNMS 913
            +P  G  DVL+++K   ICG+D+H     + +   +  PM+ GHE AG +   G  V ++  GDRV+ E  + C +C +C+ G+ +LC +        V G+ A  +V PA   FK+PD++S +  +  +P+   +H     N+  E +VLI GAGPIGL+ +  AR  GA RIVI D+++YRL +A++ GA   + V+   N  ++ +++ K+   +G   G DV  + +G N  +S
Sbjct:   21 IPEYGYNDVLIKIKKTAICGTDLHIYNWDKWSQNTIPVPMITGHEFAGEVVAKGDGVTSVDIGDRVSGEGHLVCGQCRNCRAGKRHLCRKTIGIGV-NVQGAFAEYLVMPAVNVFKIPDSISDDIASTFDPMGNAIHTALSFNLTGE-DVLITGAGPIGLMAVKIARFCGARRIVITDINEYRLQMARDFGATVALNVAPFKNQDELVKQMRKVMSDIGMTEGFDVGLEMSGINSAIS 256          
BLAST of FC878185 vs. ExPASy Swiss-Prot
Match: TDH_FRATM (L-threonine 3-dehydrogenase OS=Francisella tularensis subsp. mediasiatica (strain FSC147) GN=tdh PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.216e-32
Identity = 81/238 (34.03%), Postives = 134/238 (56.30%), Query Frame = 2
Query:  212 LPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKELGADNIVKVS--TNLQDIAEEVEKIQKAMG--TGIDVSFDCAGFNKNMS 913
            +P  G  DVL+++K   ICG+D+H     + +   +  PM+ GHE AG +   G  V ++  GDRV+ E  + C +C +C+ G+ +LC +        V G+ A  +V PA   FK+PD++S +  +  +P+   +H     N+  E +VLI GAGPIGL+ +  AR  GA RIVI D+++YRL +A++ GA   + V+   N  ++ +++ K+   +G   G DV  + +G N  +S
Sbjct:   21 IPEYGYNDVLIKIKKTAICGTDLHIYNWDKWSQNTIPVPMITGHEFAGEVVAKGDGVTSVDIGDRVSGEGHLVCGQCRNCRAGKRHLCRKTIGIGV-NVQGAFAEYLVMPAVNVFKIPDSISDDIASTFDPMGNAIHTALSFNLTGE-DVLITGAGPIGLMVVKIARFCGARRIVITDINEYRLQMARDFGATVALNVAPFKNQDELVKQMRKVMSDIGMTEGFDVGLEMSGINSAIS 256          
The following BLAST results are available for this feature:
BLAST of FC878185 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 331
Match NameE-valueIdentityDescription
TDH_ANADE7.128e-3335.37L-threonine 3-dehydrogenase OS=Anaeromyxobacter de... [more]
TDH_ALTMD7.128e-3334.62L-threonine 3-dehydrogenase OS=Alteromonas macleod... [more]
TDH_SHEPC9.309e-3335.53L-threonine 3-dehydrogenase OS=Shewanella putrefac... [more]
TDH_PSEA69.309e-3333.91L-threonine 3-dehydrogenase OS=Pseudoalteromonas a... [more]
TDH_SHEPA1.216e-3235.09L-threonine 3-dehydrogenase OS=Shewanella pealeana... [more]
TDH_PHOLL1.216e-3236.40L-threonine 3-dehydrogenase OS=Photorhabdus lumine... [more]
TDH_FRATW1.216e-3234.03L-threonine 3-dehydrogenase OS=Francisella tularen... [more]
TDH_FRATT1.216e-3234.03L-threonine 3-dehydrogenase OS=Francisella tularen... [more]
TDH_FRATO1.216e-3234.03L-threonine 3-dehydrogenase OS=Francisella tularen... [more]
TDH_FRATM1.216e-3234.03L-threonine 3-dehydrogenase OS=Francisella tularen... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA83DG12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA83DG12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878185 ID=FC878185; Name=FC878185; organism=Citrus clementina; type=EST; length=921bp
AAATCATATCCCATATCCAGAATCAGAATAAATGGTAGCTTAAAATGTTG
TGTACAGAGTGAAGTCTCTTCTGTGCACTTGTGTTTTTGAAGGGTAAAAA
GCAAATATGGGCAAAGGAGGGATGTCACAAGGAGAAAAGAAGGATGGAGA
AGAAGTTAACATGGCAGCTTGGCTTATGGGTGTCAACACCCTCAAGATTC
AACCTTTTGAGCTTCCTTCTCTGGGACCATATGATGTTTTAGTCAGGATG
AAAGCCGTTGGTATTTGTGGAAGTGATGTGCATTATCTCAAGACCTTGAG
GTGTGCCGATTTTGTTGTGAAAGAGCCTATGGTGATTGGGCACGAGTGTG
CTGGGGTCATAGAGAAGGTGGGAAGCGAGGTGAAGACTTTGGTGCCCGGT
GACCGTGTGGCCCTGGAACCCGGGATCAGCTGCTGGCGATGCGATCACTG
CAAAGGAGGTCGATACAATTTGTGTCCAGAGATGAAATTTTTTGCAACTC
CGCCCGTTCATGGTTCCCTGGCTAATCAGGTGGTGCATCCTGCAGACCTA
TGTTTTAAGCTGCCGGACAATGTGAGCCTGGAGGAAGGGGCTATGTGTGA
GCCCTTGAGTGTTGGTCTTCATGCCTGCCGCCGTGCCAATATCGGTCCTG
AGACAAATGTGCTTATCATGGGAGCAGGGCCCATAGGACTTGTCACAATG
CTAGGAGCTCGTGCTTTTGGAGCTCCTAGAATTGTCATTGTGGATGTGGA
TGACTATCGTTTATCTGTTGCAAAGGAACTTGGTGCAGATAATATTGTTA
AAGTTTCAACAAATTTGCAGGACATAGCTGAAGAAGTGGAAAAGATACAG
AAAGCCATGGGGACAGGAATAGATGTGAGCTTTGATTGTGCAGGCTTTAA
CAAAAACATGTCAACAGCACT
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